Wall clock time and date at job start Sun Mar 7 2021 09:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86305 * 109.98349 * 2 1 4 4 C 1.87519 * 110.00356 * 121.31319 * 2 1 3 5 5 C 1.53929 * 106.84926 * 75.50844 * 4 2 1 6 6 C 1.52617 * 109.31491 * 57.19876 * 5 4 2 7 7 N 1.46350 * 111.89350 * 283.48118 * 6 5 4 8 8 N 1.36603 * 111.00354 * 203.19574 * 7 6 5 9 9 C 1.34772 * 120.00556 * 124.56125 * 8 7 6 10 10 O 1.21643 * 119.99932 * 5.01453 * 9 8 7 11 11 C 1.47183 * 120.00428 * 185.02018 * 9 8 7 12 12 C 1.36007 * 123.46143 * 359.69619 * 11 9 8 13 13 S 1.70444 * 110.81880 * 179.89579 * 12 11 9 14 14 C 1.75504 * 92.44427 * 0.32304 * 13 12 11 15 15 C 1.50706 * 124.71018 * 179.78702 * 14 13 12 16 16 O 1.42902 * 109.47330 * 120.04206 * 15 14 13 17 17 Si 1.86298 * 109.47340 * 0.03527 * 15 14 13 18 18 H 1.48502 * 109.47178 * 60.00179 * 17 15 14 19 19 H 1.48497 * 109.47185 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46975 * 300.00537 * 17 15 14 21 21 C 1.32765 * 110.57829 * 359.81747 * 14 13 12 22 22 C 1.47729 * 111.30755 * 79.02266 * 7 6 5 23 23 H 1.09004 * 109.47263 * 298.68044 * 1 2 3 24 24 H 1.09004 * 109.46898 * 178.68336 * 1 2 3 25 25 H 1.09004 * 109.47362 * 58.68866 * 1 2 3 26 26 H 1.08995 * 109.46824 * 60.00176 * 3 2 1 27 27 H 1.08997 * 109.47046 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.46832 * 300.00203 * 3 2 1 29 29 H 1.09008 * 109.97777 * 194.83770 * 4 2 1 30 30 H 1.08998 * 109.97807 * 316.07671 * 4 2 1 31 31 H 1.09000 * 109.49901 * 177.15982 * 5 4 2 32 32 H 1.09001 * 109.49635 * 297.21708 * 5 4 2 33 33 H 1.09000 * 108.99612 * 44.10381 * 6 5 4 34 34 H 1.09002 * 108.99794 * 162.93782 * 6 5 4 35 35 H 0.97003 * 119.99709 * 304.56561 * 8 7 6 36 36 H 1.08000 * 124.58998 * 0.02562 * 12 11 9 37 37 H 1.09006 * 109.46672 * 240.03730 * 15 14 13 38 38 H 0.96704 * 113.99589 * 299.99493 * 16 15 14 39 39 H 1.07997 * 123.46310 * 179.97438 * 21 14 13 40 40 H 1.08998 * 109.95022 * 180.31749 * 22 7 6 41 41 H 1.09000 * 109.94500 * 59.05887 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4996 1.7509 0.0000 4 6 2.5044 -0.9158 1.5054 5 6 2.3106 -2.4178 1.2300 6 6 3.0399 -2.7932 -0.0570 7 7 2.3060 -2.3593 -1.2465 8 7 2.6567 -3.1037 -2.3369 9 6 1.7091 -3.7491 -3.0454 10 8 0.5342 -3.5961 -2.7702 11 6 2.0959 -4.6391 -4.1520 12 6 3.3861 -4.8567 -4.5234 13 16 3.4639 -5.9422 -5.8352 14 6 1.7178 -6.1067 -5.8999 15 6 0.9730 -6.9684 -6.8869 16 8 0.2094 -7.9491 -6.1819 17 14 2.1907 -7.8196 -8.0110 18 1 3.1017 -8.6683 -7.2017 19 1 1.4568 -8.6681 -8.9839 20 1 2.9842 -6.8003 -8.7436 21 6 1.1441 -5.3662 -4.9591 22 6 2.5043 -0.9181 -1.5036 23 1 -0.3634 0.4932 0.9016 24 1 -0.3633 -1.0274 -0.0236 25 1 -0.3634 0.5341 -0.8780 26 1 2.1409 2.2679 0.8900 27 1 3.5896 1.7411 -0.0005 28 1 2.1409 2.2679 -0.8900 29 1 3.5624 -0.6975 1.6513 30 1 1.9385 -0.6217 2.3893 31 1 2.7171 -2.9953 2.0603 32 1 1.2476 -2.6338 1.1227 33 1 4.0240 -2.3248 -0.0567 34 1 3.1625 -3.8758 -0.0925 35 1 3.5878 -3.1679 -2.6011 36 1 4.2450 -4.4047 -4.0498 37 1 0.3043 -6.3453 -7.4810 38 1 0.7409 -8.5402 -5.6313 39 1 0.0755 -5.3126 -4.8126 40 1 1.9446 -0.6179 -2.3894 41 1 3.5646 -0.7078 -1.6434 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_6894386.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:37:45 Heat of formation + Delta-G solvation = -38.068939 kcal Electronic energy + Delta-G solvation = -21859.368294 eV Core-core repulsion = 18604.582302 eV Total energy + Delta-G solvation = -3254.785991 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.103 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.21964 -39.22456 -38.33253 -37.05740 -34.96767 -32.49127 -30.93980 -29.33482 -28.35650 -27.57204 -26.98457 -26.15022 -24.18191 -22.07055 -21.91351 -20.58558 -19.20783 -18.25997 -18.14336 -17.50467 -16.83600 -16.30651 -15.95040 -15.66483 -15.51035 -14.96291 -14.84077 -14.58668 -14.37196 -14.34712 -13.97862 -13.80820 -13.68327 -13.61107 -13.50623 -13.19703 -13.11913 -12.99267 -12.68446 -12.35335 -12.19008 -12.04039 -11.97870 -11.81779 -11.33488 -10.85183 -10.80351 -10.58495 -10.34148 -10.22374 -10.00111 -9.71891 -9.50416 -0.38531 0.31857 0.63188 0.82213 1.10094 1.41809 1.42930 1.51127 1.81479 1.89766 1.91005 2.14916 2.28595 2.61715 3.33340 3.43480 3.66046 3.85282 3.94693 4.01027 4.16724 4.24752 4.40947 4.52983 4.54839 4.67408 4.68278 4.73553 4.79538 4.80944 4.84212 4.84684 4.91434 4.98766 5.09564 5.14696 5.30588 5.47398 5.57600 5.65489 5.81134 6.17420 6.37903 6.63334 7.47085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.466 4.466 2 Si 1.091 2.909 3 C -0.453 4.453 4 C -0.411 4.411 5 C -0.103 4.103 6 C 0.026 3.974 7 N -0.302 5.302 8 N -0.572 5.572 9 C 0.590 3.410 10 O -0.561 6.561 11 C -0.175 4.175 12 C -0.187 4.187 13 S 0.218 5.782 14 C -0.243 4.243 15 C -0.044 4.044 16 O -0.549 6.549 17 Si 0.923 3.077 18 H -0.228 1.228 19 H -0.243 1.243 20 H -0.233 1.233 21 C -0.070 4.070 22 C -0.272 4.272 23 H 0.073 0.927 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.391 0.609 36 H 0.200 0.800 37 H 0.130 0.870 38 H 0.391 0.609 39 H 0.139 0.861 40 H 0.073 0.927 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.094 0.478 0.104 8.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.571 4.571 2 Si 1.280 2.720 3 C -0.562 4.562 4 C -0.497 4.497 5 C -0.142 4.142 6 C -0.101 4.101 7 N -0.118 5.118 8 N -0.316 5.316 9 C 0.377 3.623 10 O -0.439 6.439 11 C -0.194 4.194 12 C -0.326 4.326 13 S 0.484 5.516 14 C -0.360 4.360 15 C -0.156 4.156 16 O -0.357 6.357 17 Si 0.742 3.258 18 H -0.151 1.151 19 H -0.166 1.166 20 H -0.156 1.156 21 C -0.099 4.099 22 C -0.444 4.444 23 H 0.092 0.908 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.232 0.768 36 H 0.217 0.783 37 H 0.147 0.853 38 H 0.240 0.760 39 H 0.157 0.843 40 H 0.092 0.908 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.079 -0.298 -1.354 8.197 hybrid contribution -0.195 0.794 1.117 1.384 sum 7.884 0.496 -0.237 7.903 Atomic orbital electron populations 1.26357 1.23165 1.03652 1.03970 0.78320 0.64935 0.65144 0.63606 1.26136 1.06895 1.18196 1.04936 1.26392 1.07137 1.01640 1.14519 1.21209 1.00930 0.96913 0.95161 1.22597 0.96620 1.01496 0.89435 1.62940 1.54003 1.00490 0.94390 1.45283 1.09358 1.49629 1.27373 1.17755 0.84866 0.78755 0.80918 1.90772 1.19440 1.64466 1.69213 1.20090 0.93425 1.04869 1.01060 1.26031 1.00494 1.03525 1.02511 1.83092 1.01845 1.39401 1.27247 1.24920 0.97909 1.07855 1.05290 1.24579 1.01912 0.92273 0.96868 1.86524 1.37472 1.46482 1.65175 0.85875 0.77927 0.81717 0.80245 1.15062 1.16578 1.15551 1.20967 1.00493 0.94725 0.93729 1.28303 1.05447 0.92755 1.17856 0.90828 0.92548 0.92177 0.90324 0.90302 0.91288 0.89207 0.89590 0.89893 0.92002 0.91630 0.90487 0.76761 0.78287 0.85288 0.76004 0.84326 0.90780 0.91187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 -1.21 8.65 113.37 0.98 -0.23 16 2 Si 1.09 -4.05 11.99 68.60 0.82 -3.23 16 3 C -0.45 2.03 8.65 113.37 0.98 3.01 16 4 C -0.41 1.77 5.04 72.30 0.36 2.13 16 5 C -0.10 0.13 5.74 30.78 0.18 0.31 16 6 C 0.03 -0.03 5.38 86.28 0.46 0.44 16 7 N -0.30 -1.09 4.15 -334.17 -1.39 -2.47 16 8 N -0.57 -1.74 4.67 -176.05 -0.82 -2.56 16 9 C 0.59 5.56 7.89 86.59 0.68 6.25 16 10 O -0.56 -10.78 17.13 -4.17 -0.07 -10.85 16 11 C -0.18 -0.76 5.98 -19.87 -0.12 -0.88 16 12 C -0.19 0.53 10.38 67.30 0.70 1.23 16 13 S 0.22 -0.71 20.18 -56.49 -1.14 -1.85 16 14 C -0.24 -0.20 5.68 24.51 0.14 -0.06 16 15 C -0.04 0.04 2.95 71.24 0.21 0.25 16 16 O -0.55 -0.65 12.85 -148.98 -1.91 -2.56 16 17 Si 0.92 -2.74 26.19 68.60 1.80 -0.94 16 18 H -0.23 0.89 7.11 99.48 0.71 1.59 16 19 H -0.24 0.02 7.11 99.48 0.71 0.73 16 20 H -0.23 0.68 7.11 99.48 0.71 1.39 16 21 C -0.07 -0.39 9.91 22.67 0.22 -0.17 16 22 C -0.27 0.00 4.86 127.53 0.62 0.62 16 23 H 0.07 0.05 7.96 -2.39 -0.02 0.04 16 24 H 0.06 0.40 7.96 -2.38 -0.02 0.38 16 25 H 0.06 0.22 7.96 -2.38 -0.02 0.20 16 26 H 0.08 -0.37 7.96 -2.39 -0.02 -0.39 16 27 H 0.08 -0.46 7.96 -2.39 -0.02 -0.48 16 28 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 29 H 0.09 -0.60 7.99 -2.38 -0.02 -0.62 16 30 H 0.09 -0.41 7.99 -2.39 -0.02 -0.42 16 31 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 32 H 0.06 0.15 7.96 -2.39 -0.02 0.13 16 33 H 0.07 -0.34 7.78 -2.39 -0.02 -0.36 16 34 H 0.08 -0.03 8.03 -2.39 -0.02 -0.05 16 35 H 0.39 -1.57 7.34 -215.49 -1.58 -3.15 16 36 H 0.20 -1.97 7.02 -2.91 -0.02 -2.00 16 37 H 0.13 -0.26 7.96 -2.38 -0.02 -0.27 16 38 H 0.39 -2.20 8.70 -74.05 -0.64 -2.84 16 39 H 0.14 1.26 8.06 -2.91 -0.02 1.23 16 40 H 0.07 0.25 7.99 -2.39 -0.02 0.23 16 41 H 0.07 -0.28 7.92 -2.39 -0.02 -0.30 16 Total: 0.00 -19.34 350.25 2.27 -17.06 By element: Atomic # 1 Polarization: -5.07 SS G_CDS: -0.43 Total: -5.51 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: 5.42 Total: 12.92 kcal Atomic # 7 Polarization: -2.83 SS G_CDS: -2.21 Total: -5.04 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: -1.99 Total: -13.41 kcal Atomic # 14 Polarization: -6.80 SS G_CDS: 2.62 Total: -4.18 kcal Atomic # 16 Polarization: -0.71 SS G_CDS: -1.14 Total: -1.85 kcal Total: -19.34 2.27 -17.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_6894386.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.006 kcal (2) G-P(sol) polarization free energy of solvation -19.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds