Wall clock time and date at job start Sun Mar 7 2021 09:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38334 * 119.85728 * 2 1 4 4 C 1.37978 * 120.14942 * 179.74746 * 3 2 1 5 5 C 1.50695 * 120.07612 * 180.25499 * 4 3 2 6 6 C 1.39556 * 119.84566 * 0.52344 * 4 3 2 7 7 C 1.47850 * 120.14109 * 179.72511 * 6 4 3 8 8 O 1.21552 * 119.99974 * 353.48239 * 7 6 4 9 9 N 1.34772 * 119.99920 * 173.20664 * 7 6 4 10 10 N 1.36603 * 119.99751 * 174.71258 * 9 7 6 11 11 C 1.46365 * 110.99771 * 233.67863 * 10 9 7 12 12 C 1.52622 * 111.89019 * 156.80061 * 11 10 9 13 13 C 1.53938 * 109.31119 * 76.52575 * 12 11 10 14 14 Si 1.87530 * 106.84835 * 302.79638 * 13 12 11 15 15 C 1.86290 * 110.00389 * 163.09548 * 14 13 12 16 16 C 1.86302 * 109.99884 * 284.40096 * 14 13 12 17 17 C 1.47727 * 111.00331 * 109.33116 * 10 9 7 18 18 C 1.39594 * 119.71854 * 359.45404 * 6 4 3 19 19 C 1.37941 * 119.84581 * 0.27572 * 18 6 4 20 20 C 1.50706 * 119.92311 * 180.02562 * 19 18 6 21 21 O 1.42893 * 109.46959 * 254.99931 * 20 19 18 22 22 Si 1.86301 * 109.47036 * 14.99900 * 20 19 18 23 23 H 1.48498 * 109.47363 * 60.00157 * 22 20 19 24 24 H 1.48498 * 109.46937 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.46919 * 299.99992 * 22 20 19 26 26 H 1.09006 * 109.47045 * 270.02592 * 1 2 3 27 27 H 1.08998 * 109.46892 * 30.02461 * 1 2 3 28 28 H 1.08995 * 109.47441 * 150.02525 * 1 2 3 29 29 H 1.08010 * 119.92530 * 0.02562 * 3 2 1 30 30 H 1.09005 * 109.47216 * 263.65293 * 5 4 3 31 31 H 1.08997 * 109.47198 * 23.65378 * 5 4 3 32 32 H 1.09005 * 109.47493 * 143.65429 * 5 4 3 33 33 H 0.96996 * 120.00188 * 354.71058 * 9 7 6 34 34 H 1.08998 * 108.99807 * 277.42460 * 11 10 9 35 35 H 1.09000 * 108.99661 * 36.26606 * 11 10 9 36 36 H 1.08996 * 109.50333 * 196.47440 * 12 11 10 37 37 H 1.09000 * 109.50306 * 316.58124 * 12 11 10 38 38 H 1.08996 * 109.97606 * 62.12191 * 13 12 11 39 39 H 1.08991 * 109.97893 * 183.37188 * 13 12 11 40 40 H 1.09002 * 109.46984 * 60.00140 * 15 14 13 41 41 H 1.09004 * 109.47390 * 179.97438 * 15 14 13 42 42 H 1.08996 * 109.47618 * 300.00264 * 15 14 13 43 43 H 1.09000 * 109.47406 * 60.00373 * 16 14 13 44 44 H 1.09003 * 109.46664 * 179.97438 * 16 14 13 45 45 H 1.08993 * 109.47269 * 299.99749 * 16 14 13 46 46 H 1.09002 * 109.94686 * 303.85789 * 17 10 9 47 47 H 1.09006 * 109.94728 * 65.11243 * 17 10 9 48 48 H 1.07994 * 120.07952 * 180.29182 * 18 6 4 49 49 H 1.08998 * 109.46953 * 134.99741 * 20 19 18 50 50 H 0.96707 * 113.99912 * 299.99777 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1997 0.0000 4 6 3.5754 1.2068 0.0053 5 6 4.3239 2.5147 0.0111 6 6 4.2761 -0.0001 -0.0005 7 6 5.7546 -0.0001 -0.0010 8 8 6.3624 1.0462 -0.1160 9 7 6.4285 -1.1598 0.1315 10 7 7.7901 -1.1747 0.0230 11 6 8.2262 -2.1545 -0.9730 12 6 9.6093 -1.8251 -1.5278 13 6 10.6794 -2.2156 -0.4924 14 14 10.2758 -1.2838 1.0842 15 6 11.1732 -2.0510 2.5252 16 6 10.7640 0.5056 0.9095 17 6 8.4231 -1.4241 1.3343 18 6 3.5752 -1.2073 0.0001 19 6 2.1958 -1.2002 0.0005 20 6 1.4373 -2.5024 0.0016 21 8 0.8959 -2.7394 -1.2994 22 14 2.5910 -3.8926 0.4568 23 1 3.1536 -3.6464 1.8088 24 1 1.8437 -5.1759 0.4574 25 1 3.6952 -3.9638 -0.5335 26 1 -0.3633 0.0005 1.0277 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3634 -0.8902 -0.5134 29 1 1.6521 2.1331 0.0004 30 1 4.6069 2.7759 -1.0087 31 1 3.6859 3.2966 0.4227 32 1 5.2206 2.4175 0.6233 33 1 5.9467 -1.9837 0.3040 34 1 8.2550 -3.1413 -0.5110 35 1 7.5098 -2.1684 -1.7944 36 1 9.7741 -2.3832 -2.4494 37 1 9.6741 -0.7564 -1.7325 38 1 10.6458 -3.2895 -0.3092 39 1 11.6677 -1.9302 -0.8526 40 1 12.2480 -2.0080 2.3485 41 1 10.9331 -1.5029 3.4363 42 1 10.8642 -3.0905 2.6340 43 1 10.2170 0.9521 0.0792 44 1 10.5255 1.0387 1.8299 45 1 11.8348 0.5730 0.7173 46 1 8.0879 -0.6798 2.0566 47 1 8.1700 -2.4246 1.6851 48 1 4.1115 -2.1446 0.0004 49 1 0.6268 -2.4501 0.7285 50 1 0.2849 -2.0536 -1.6020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608516_9599494.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:38:17 Heat of formation + Delta-G solvation = -53.563895 kcal Electronic energy + Delta-G solvation = -27981.623883 eV Core-core repulsion = 24325.938495 eV Total energy + Delta-G solvation = -3655.685387 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 336.178 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.65497 -40.32536 -38.57986 -37.51341 -35.07449 -34.26592 -33.62520 -31.54343 -29.42183 -29.17904 -28.53104 -28.39739 -27.59980 -25.66296 -24.80379 -23.73639 -22.41789 -21.77969 -20.96336 -19.07438 -18.30650 -18.17171 -16.91990 -16.77413 -16.44979 -16.31020 -15.72653 -15.55750 -15.24752 -15.08133 -14.81026 -14.71931 -14.64195 -14.37557 -14.14489 -14.08250 -13.85328 -13.81963 -13.57070 -13.44977 -13.25937 -13.13877 -13.01968 -12.94658 -12.83739 -12.69990 -12.58234 -12.29258 -12.09411 -12.03519 -11.88716 -11.32382 -11.22532 -11.15279 -10.85870 -10.52176 -10.32806 -10.08614 -9.90528 -9.71357 -9.57876 -0.21600 0.18141 1.07899 1.37415 1.38911 1.42288 1.73936 1.81916 1.85897 1.90162 2.07828 2.54533 2.72549 3.33133 3.45912 3.55241 3.56257 3.73506 3.78007 3.93620 4.04590 4.11114 4.13719 4.28986 4.38710 4.45542 4.47292 4.47916 4.50308 4.59782 4.65383 4.66496 4.70117 4.70786 4.82190 4.85687 4.89451 4.93066 4.94623 4.98579 5.02234 5.09102 5.22597 5.30532 5.36247 5.40639 5.42452 5.56518 5.69946 5.77352 5.80484 6.34801 6.43353 6.45679 7.59000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.041 4.041 3 C -0.127 4.127 4 C -0.009 4.009 5 C -0.124 4.124 6 C -0.137 4.137 7 C 0.575 3.425 8 O -0.500 6.500 9 N -0.586 5.586 10 N -0.273 5.273 11 C 0.024 3.976 12 C -0.099 4.099 13 C -0.410 4.410 14 Si 1.031 2.969 15 C -0.450 4.450 16 C -0.442 4.442 17 C -0.262 4.262 18 C -0.081 4.081 19 C -0.130 4.130 20 C -0.091 4.091 21 O -0.536 6.536 22 Si 1.006 2.994 23 H -0.247 1.247 24 H -0.251 1.251 25 H -0.252 1.252 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.134 0.866 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.097 0.903 33 H 0.374 0.626 34 H 0.046 0.954 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.091 0.909 47 H 0.052 0.948 48 H 0.122 0.878 49 H 0.079 0.921 50 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.740 -1.952 1.579 3.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.041 4.041 3 C -0.145 4.145 4 C -0.010 4.010 5 C -0.180 4.180 6 C -0.142 4.142 7 C 0.364 3.636 8 O -0.374 6.374 9 N -0.331 5.331 10 N -0.089 5.089 11 C -0.104 4.104 12 C -0.138 4.138 13 C -0.496 4.496 14 Si 1.224 2.776 15 C -0.558 4.558 16 C -0.550 4.550 17 C -0.435 4.435 18 C -0.099 4.099 19 C -0.131 4.131 20 C -0.199 4.199 21 O -0.343 6.343 22 Si 0.826 3.174 23 H -0.170 1.170 24 H -0.175 1.175 25 H -0.176 1.176 26 H 0.099 0.901 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.152 0.848 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.115 0.885 33 H 0.213 0.787 34 H 0.064 0.936 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.097 0.903 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.110 0.890 47 H 0.070 0.930 48 H 0.140 0.860 49 H 0.097 0.903 50 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -0.309 -1.929 1.576 2.510 hybrid contribution -1.343 -0.443 0.215 1.430 sum -1.652 -2.372 1.791 3.400 Atomic orbital electron populations 1.20981 0.90602 1.03307 1.03309 1.19961 0.96322 0.92201 0.95629 1.21003 0.93156 0.97946 1.02373 1.20080 0.93369 0.94851 0.92718 1.21133 1.00910 0.91946 1.04022 1.19629 0.92388 0.93707 1.08443 1.18010 0.86149 0.83045 0.76432 1.90726 1.69562 1.29981 1.47147 1.45555 1.02323 1.10033 1.75162 1.63001 0.90518 1.48574 1.06829 1.22585 0.98880 0.93417 0.95513 1.21179 0.91378 1.03009 0.98227 1.26382 1.02069 1.07514 1.13640 0.79223 0.63510 0.68131 0.66778 1.26117 1.08469 1.07069 1.14167 1.26010 1.05117 1.18683 1.05225 1.28109 1.19501 1.02768 0.93147 1.21144 0.93884 0.97088 0.97806 1.19955 0.93517 0.95483 1.04118 1.25302 1.03260 1.02618 0.88755 1.86778 1.65045 1.50615 1.31852 0.84557 0.77400 0.75993 0.79481 1.16990 1.17507 1.17633 0.90077 0.90487 0.91327 0.84793 0.90231 0.92110 0.88461 0.78684 0.93586 0.90008 0.90769 0.90193 0.90701 0.90050 0.90709 0.91055 0.91258 0.90297 0.91363 0.91402 0.89040 0.92950 0.86030 0.90302 0.78478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.34 9.27 36.00 0.33 0.68 16 2 C -0.04 0.01 5.87 -104.54 -0.61 -0.61 16 3 C -0.13 -0.06 9.31 -39.64 -0.37 -0.43 16 4 C -0.01 -0.02 5.91 -104.23 -0.62 -0.64 16 5 C -0.12 -0.25 8.72 36.00 0.31 0.06 16 6 C -0.14 -0.36 5.87 -104.97 -0.62 -0.98 16 7 C 0.58 2.27 7.80 -12.33 -0.10 2.17 16 8 O -0.50 -3.29 13.69 5.32 0.07 -3.22 16 9 N -0.59 -1.22 4.65 30.53 0.14 -1.08 16 10 N -0.27 -0.48 4.15 -56.96 -0.24 -0.71 16 11 C 0.02 0.00 5.37 -4.31 -0.02 -0.02 16 12 C -0.10 0.05 5.74 -26.44 -0.15 -0.11 16 13 C -0.41 0.61 5.03 37.65 0.19 0.80 16 14 Si 1.03 -1.82 11.99 -169.99 -2.04 -3.86 16 15 C -0.45 0.71 8.65 101.05 0.87 1.58 16 16 C -0.44 -0.07 8.65 101.05 0.87 0.80 16 17 C -0.26 -0.04 4.86 60.52 0.29 0.26 16 18 C -0.08 -0.11 8.11 -39.18 -0.32 -0.42 16 19 C -0.13 -0.07 5.26 -104.68 -0.55 -0.62 16 20 C -0.09 0.04 1.96 36.01 0.07 0.11 16 21 O -0.54 -0.18 12.64 -35.23 -0.45 -0.63 16 22 Si 1.01 -0.24 25.74 -169.99 -4.38 -4.62 16 23 H -0.25 0.18 7.11 56.52 0.40 0.58 16 24 H -0.25 -0.19 7.11 56.52 0.40 0.21 16 25 H -0.25 -0.04 6.73 56.52 0.38 0.34 16 26 H 0.08 -0.26 8.14 -51.93 -0.42 -0.69 16 27 H 0.08 -0.26 8.08 -51.93 -0.42 -0.68 16 28 H 0.07 -0.26 4.96 -51.93 -0.26 -0.51 16 29 H 0.13 -0.19 8.06 -52.48 -0.42 -0.61 16 30 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.02 8.04 -51.93 -0.42 -0.40 16 32 H 0.10 0.37 5.87 -51.93 -0.30 0.06 16 33 H 0.37 0.02 6.94 -185.16 -1.29 -1.27 16 34 H 0.05 -0.05 7.78 -51.93 -0.40 -0.45 16 35 H 0.08 0.03 8.03 -51.93 -0.42 -0.38 16 36 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 37 H 0.08 0.03 7.96 -51.93 -0.41 -0.38 16 38 H 0.07 -0.14 7.99 -51.93 -0.42 -0.56 16 39 H 0.08 -0.14 7.99 -51.93 -0.42 -0.56 16 40 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 41 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 42 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 43 H 0.08 0.13 7.96 -51.93 -0.41 -0.28 16 44 H 0.07 0.03 7.96 -51.93 -0.41 -0.38 16 45 H 0.07 -0.03 7.96 -51.93 -0.41 -0.44 16 46 H 0.09 0.10 7.99 -51.93 -0.41 -0.32 16 47 H 0.05 -0.05 7.92 -51.93 -0.41 -0.46 16 48 H 0.12 -0.01 3.33 -52.49 -0.17 -0.18 16 49 H 0.08 -0.18 7.38 -51.93 -0.38 -0.56 16 50 H 0.37 -0.90 6.84 45.56 0.31 -0.59 16 LS Contribution 387.58 15.07 5.84 5.84 Total: 0.00 -6.21 387.58 -10.26 -16.46 By element: Atomic # 1 Polarization: -2.02 SS G_CDS: -8.81 Total: -10.83 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -0.40 Total: 2.64 kcal Atomic # 7 Polarization: -1.70 SS G_CDS: -0.09 Total: -1.79 kcal Atomic # 8 Polarization: -3.47 SS G_CDS: -0.37 Total: -3.85 kcal Atomic # 14 Polarization: -2.06 SS G_CDS: -6.41 Total: -8.48 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -6.21 -10.26 -16.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_9599494.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.100 kcal (2) G-P(sol) polarization free energy of solvation -6.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds