Wall clock time and date at job start Sun Mar 7 2021 09:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38334 * 119.85728 * 2 1 4 4 C 1.37978 * 120.14942 * 179.74746 * 3 2 1 5 5 C 1.50695 * 120.07612 * 180.25499 * 4 3 2 6 6 C 1.39556 * 119.84566 * 0.52344 * 4 3 2 7 7 C 1.47850 * 120.14109 * 179.72511 * 6 4 3 8 8 O 1.21552 * 119.99974 * 353.48239 * 7 6 4 9 9 N 1.34772 * 119.99920 * 173.20664 * 7 6 4 10 10 N 1.36603 * 119.99751 * 174.71258 * 9 7 6 11 11 C 1.46365 * 110.99771 * 233.67863 * 10 9 7 12 12 C 1.52622 * 111.89019 * 156.80061 * 11 10 9 13 13 C 1.53938 * 109.31119 * 76.52575 * 12 11 10 14 14 Si 1.87530 * 106.84835 * 302.79638 * 13 12 11 15 15 C 1.86290 * 110.00389 * 163.09548 * 14 13 12 16 16 C 1.86302 * 109.99884 * 284.40096 * 14 13 12 17 17 C 1.47727 * 111.00331 * 109.33116 * 10 9 7 18 18 C 1.39594 * 119.71854 * 359.45404 * 6 4 3 19 19 C 1.37941 * 119.84581 * 0.27572 * 18 6 4 20 20 C 1.50706 * 119.92311 * 180.02562 * 19 18 6 21 21 O 1.42893 * 109.46959 * 254.99931 * 20 19 18 22 22 Si 1.86301 * 109.47036 * 14.99900 * 20 19 18 23 23 H 1.48498 * 109.47363 * 60.00157 * 22 20 19 24 24 H 1.48498 * 109.46937 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.46919 * 299.99992 * 22 20 19 26 26 H 1.09006 * 109.47045 * 270.02592 * 1 2 3 27 27 H 1.08998 * 109.46892 * 30.02461 * 1 2 3 28 28 H 1.08995 * 109.47441 * 150.02525 * 1 2 3 29 29 H 1.08010 * 119.92530 * 0.02562 * 3 2 1 30 30 H 1.09005 * 109.47216 * 263.65293 * 5 4 3 31 31 H 1.08997 * 109.47198 * 23.65378 * 5 4 3 32 32 H 1.09005 * 109.47493 * 143.65429 * 5 4 3 33 33 H 0.96996 * 120.00188 * 354.71058 * 9 7 6 34 34 H 1.08998 * 108.99807 * 277.42460 * 11 10 9 35 35 H 1.09000 * 108.99661 * 36.26606 * 11 10 9 36 36 H 1.08996 * 109.50333 * 196.47440 * 12 11 10 37 37 H 1.09000 * 109.50306 * 316.58124 * 12 11 10 38 38 H 1.08996 * 109.97606 * 62.12191 * 13 12 11 39 39 H 1.08991 * 109.97893 * 183.37188 * 13 12 11 40 40 H 1.09002 * 109.46984 * 60.00140 * 15 14 13 41 41 H 1.09004 * 109.47390 * 179.97438 * 15 14 13 42 42 H 1.08996 * 109.47618 * 300.00264 * 15 14 13 43 43 H 1.09000 * 109.47406 * 60.00373 * 16 14 13 44 44 H 1.09003 * 109.46664 * 179.97438 * 16 14 13 45 45 H 1.08993 * 109.47269 * 299.99749 * 16 14 13 46 46 H 1.09002 * 109.94686 * 303.85789 * 17 10 9 47 47 H 1.09006 * 109.94728 * 65.11243 * 17 10 9 48 48 H 1.07994 * 120.07952 * 180.29182 * 18 6 4 49 49 H 1.08998 * 109.46953 * 134.99741 * 20 19 18 50 50 H 0.96707 * 113.99912 * 299.99777 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1997 0.0000 4 6 3.5754 1.2068 0.0053 5 6 4.3239 2.5147 0.0111 6 6 4.2761 -0.0001 -0.0005 7 6 5.7546 -0.0001 -0.0010 8 8 6.3624 1.0462 -0.1160 9 7 6.4285 -1.1598 0.1315 10 7 7.7901 -1.1747 0.0230 11 6 8.2262 -2.1545 -0.9730 12 6 9.6093 -1.8251 -1.5278 13 6 10.6794 -2.2156 -0.4924 14 14 10.2758 -1.2838 1.0842 15 6 11.1732 -2.0510 2.5252 16 6 10.7640 0.5056 0.9095 17 6 8.4231 -1.4241 1.3343 18 6 3.5752 -1.2073 0.0001 19 6 2.1958 -1.2002 0.0005 20 6 1.4373 -2.5024 0.0016 21 8 0.8959 -2.7394 -1.2994 22 14 2.5910 -3.8926 0.4568 23 1 3.1536 -3.6464 1.8088 24 1 1.8437 -5.1759 0.4574 25 1 3.6952 -3.9638 -0.5335 26 1 -0.3633 0.0005 1.0277 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3634 -0.8902 -0.5134 29 1 1.6521 2.1331 0.0004 30 1 4.6069 2.7759 -1.0087 31 1 3.6859 3.2966 0.4227 32 1 5.2206 2.4175 0.6233 33 1 5.9467 -1.9837 0.3040 34 1 8.2550 -3.1413 -0.5110 35 1 7.5098 -2.1684 -1.7944 36 1 9.7741 -2.3832 -2.4494 37 1 9.6741 -0.7564 -1.7325 38 1 10.6458 -3.2895 -0.3092 39 1 11.6677 -1.9302 -0.8526 40 1 12.2480 -2.0080 2.3485 41 1 10.9331 -1.5029 3.4363 42 1 10.8642 -3.0905 2.6340 43 1 10.2170 0.9521 0.0792 44 1 10.5255 1.0387 1.8299 45 1 11.8348 0.5730 0.7173 46 1 8.0879 -0.6798 2.0566 47 1 8.1700 -2.4246 1.6851 48 1 4.1115 -2.1446 0.0004 49 1 0.6268 -2.4501 0.7285 50 1 0.2849 -2.0536 -1.6020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_9599494.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:38:16 Heat of formation + Delta-G solvation = -46.213218 kcal Electronic energy + Delta-G solvation = -27981.305133 eV Core-core repulsion = 24325.938495 eV Total energy + Delta-G solvation = -3655.366638 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 336.178 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.77661 -40.40868 -38.70096 -37.55810 -35.15840 -34.29448 -33.65149 -31.60027 -29.37403 -29.23471 -28.47118 -28.36033 -27.57216 -25.70439 -24.83321 -23.74566 -22.46193 -21.86734 -21.05194 -19.15074 -18.39318 -18.19995 -16.96607 -16.83568 -16.46007 -16.41184 -15.79820 -15.63806 -15.22386 -15.13583 -14.78805 -14.77226 -14.62976 -14.37217 -14.15785 -13.99779 -13.86285 -13.81114 -13.52025 -13.36841 -13.19908 -13.12609 -13.01924 -12.98459 -12.86738 -12.67318 -12.60626 -12.27504 -12.07031 -11.98507 -11.93410 -11.33278 -11.22810 -11.12032 -10.81411 -10.68872 -10.32132 -10.23534 -9.93939 -9.76651 -9.64442 -0.30396 0.12708 1.11637 1.38368 1.40183 1.43311 1.71049 1.81399 1.88106 1.90252 2.12881 2.59311 2.61608 3.27240 3.45800 3.52189 3.56242 3.74834 3.82525 3.96515 4.07161 4.12917 4.17208 4.38155 4.40382 4.47382 4.49351 4.53826 4.64680 4.66011 4.70624 4.74906 4.79045 4.79645 4.79801 4.83259 4.84417 4.85741 4.90445 5.04462 5.07587 5.11600 5.23497 5.28059 5.40752 5.44161 5.46343 5.56425 5.65439 5.76931 5.77608 6.16147 6.30406 6.62767 7.40767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.036 4.036 3 C -0.129 4.129 4 C -0.025 4.025 5 C -0.118 4.118 6 C -0.156 4.156 7 C 0.570 3.430 8 O -0.538 6.538 9 N -0.581 5.581 10 N -0.295 5.295 11 C 0.022 3.978 12 C -0.101 4.101 13 C -0.411 4.411 14 Si 1.092 2.908 15 C -0.453 4.453 16 C -0.462 4.462 17 C -0.276 4.276 18 C -0.086 4.086 19 C -0.135 4.135 20 C -0.088 4.088 21 O -0.550 6.550 22 Si 1.013 2.987 23 H -0.240 1.240 24 H -0.266 1.266 25 H -0.263 1.263 26 H 0.092 0.908 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.154 0.846 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.384 0.616 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.074 0.926 46 H 0.076 0.924 47 H 0.065 0.935 48 H 0.129 0.871 49 H 0.103 0.897 50 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.731 -3.115 1.933 4.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.036 4.036 3 C -0.147 4.147 4 C -0.026 4.026 5 C -0.174 4.174 6 C -0.160 4.160 7 C 0.359 3.641 8 O -0.415 6.415 9 N -0.326 5.326 10 N -0.112 5.112 11 C -0.105 4.105 12 C -0.140 4.140 13 C -0.498 4.498 14 Si 1.280 2.720 15 C -0.562 4.562 16 C -0.568 4.568 17 C -0.447 4.447 18 C -0.105 4.105 19 C -0.136 4.136 20 C -0.197 4.197 21 O -0.359 6.359 22 Si 0.834 3.166 23 H -0.163 1.163 24 H -0.190 1.190 25 H -0.188 1.188 26 H 0.110 0.890 27 H 0.105 0.895 28 H 0.099 0.901 29 H 0.172 0.828 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.224 0.776 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.093 0.907 46 H 0.094 0.906 47 H 0.084 0.916 48 H 0.147 0.853 49 H 0.121 0.879 50 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -1.319 -3.093 1.937 3.880 hybrid contribution -1.073 -0.078 0.090 1.080 sum -2.392 -3.171 2.027 4.459 Atomic orbital electron populations 1.21077 0.88388 1.04485 1.04303 1.20288 0.97879 0.91531 0.93914 1.21246 0.92421 0.99232 1.01818 1.20222 0.94341 0.94518 0.93548 1.21019 1.00441 0.92891 1.03062 1.19640 0.91653 0.94634 1.10087 1.18355 0.86883 0.82988 0.75838 1.90702 1.70414 1.31218 1.49196 1.45526 1.02787 1.09954 1.74293 1.63018 0.90316 1.49844 1.07983 1.22638 0.99001 0.93838 0.95067 1.21197 0.91458 1.02283 0.99029 1.26409 1.01924 1.08330 1.13092 0.78323 0.61293 0.65734 0.66621 1.26139 1.08742 1.07473 1.13830 1.26293 1.05389 1.21084 1.03994 1.28383 1.21177 1.02955 0.92206 1.21273 0.94553 0.96852 0.97793 1.20158 0.93218 0.96405 1.03799 1.25265 1.03792 1.01492 0.89131 1.86753 1.65518 1.51428 1.32215 0.84475 0.77043 0.75515 0.79542 1.16309 1.19042 1.18778 0.88994 0.89471 0.90071 0.82847 0.91248 0.90266 0.90687 0.77622 0.91933 0.90710 0.89937 0.91641 0.89409 0.89383 0.90207 0.91228 0.90485 0.92355 0.92057 0.90736 0.90567 0.91619 0.85328 0.87937 0.77057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.97 9.27 71.24 0.66 1.63 16 2 C -0.04 0.05 5.87 -19.81 -0.12 -0.07 16 3 C -0.13 -0.08 9.31 22.23 0.21 0.12 16 4 C -0.03 -0.14 5.91 -19.61 -0.12 -0.26 16 5 C -0.12 -0.73 8.72 71.23 0.62 -0.11 16 6 C -0.16 -1.09 5.87 -20.09 -0.12 -1.21 16 7 C 0.57 6.00 7.80 86.79 0.68 6.67 16 8 O -0.54 -8.99 13.69 -3.88 -0.05 -9.04 16 9 N -0.58 -3.54 4.65 -175.60 -0.82 -4.35 16 10 N -0.30 -1.52 4.15 -334.12 -1.39 -2.91 16 11 C 0.02 0.02 5.37 86.28 0.46 0.49 16 12 C -0.10 0.04 5.74 30.79 0.18 0.22 16 13 C -0.41 1.47 5.03 72.30 0.36 1.84 16 14 Si 1.09 -3.50 11.99 68.60 0.82 -2.68 16 15 C -0.45 1.79 8.65 113.37 0.98 2.77 16 16 C -0.46 -0.98 8.65 113.37 0.98 0.00 16 17 C -0.28 -0.37 4.86 127.53 0.62 0.25 16 18 C -0.09 -0.29 8.11 22.53 0.18 -0.10 16 19 C -0.14 -0.08 5.26 -19.90 -0.10 -0.19 16 20 C -0.09 0.17 1.96 71.24 0.14 0.31 16 21 O -0.55 0.23 12.64 -148.98 -1.88 -1.65 16 22 Si 1.01 -0.58 25.74 68.60 1.77 1.18 16 23 H -0.24 0.43 7.11 99.48 0.71 1.14 16 24 H -0.27 -0.48 7.11 99.48 0.71 0.23 16 25 H -0.26 -0.26 6.73 99.48 0.67 0.41 16 26 H 0.09 -0.83 8.14 -2.38 -0.02 -0.85 16 27 H 0.09 -0.80 8.08 -2.39 -0.02 -0.82 16 28 H 0.08 -0.81 4.96 -2.39 -0.01 -0.82 16 29 H 0.15 -0.60 8.06 -2.91 -0.02 -0.63 16 30 H 0.07 0.52 8.14 -2.38 -0.02 0.51 16 31 H 0.08 0.12 8.04 -2.39 -0.02 0.10 16 32 H 0.07 0.82 5.87 -2.38 -0.01 0.80 16 33 H 0.38 0.58 6.94 -215.50 -1.50 -0.91 16 34 H 0.06 -0.16 7.78 -2.39 -0.02 -0.17 16 35 H 0.07 0.16 8.03 -2.39 -0.02 0.14 16 36 H 0.08 -0.17 8.14 -2.39 -0.02 -0.19 16 37 H 0.06 0.17 7.96 -2.39 -0.02 0.15 16 38 H 0.09 -0.49 7.99 -2.39 -0.02 -0.51 16 39 H 0.09 -0.39 7.99 -2.39 -0.02 -0.41 16 40 H 0.08 -0.35 7.96 -2.39 -0.02 -0.37 16 41 H 0.07 -0.22 7.96 -2.38 -0.02 -0.24 16 42 H 0.08 -0.38 7.96 -2.39 -0.02 -0.40 16 43 H 0.06 0.36 7.96 -2.39 -0.02 0.35 16 44 H 0.06 0.19 7.96 -2.39 -0.02 0.17 16 45 H 0.07 0.02 7.96 -2.39 -0.02 0.00 16 46 H 0.08 0.33 7.99 -2.39 -0.02 0.31 16 47 H 0.07 -0.12 7.92 -2.38 -0.02 -0.14 16 48 H 0.13 0.10 3.33 -2.91 -0.01 0.09 16 49 H 0.10 -0.68 7.38 -2.39 -0.02 -0.70 16 50 H 0.38 -2.46 6.84 -74.05 -0.51 -2.96 16 Total: 0.00 -16.55 387.58 3.73 -12.82 By element: Atomic # 1 Polarization: -5.41 SS G_CDS: -0.34 Total: -5.75 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: 5.62 Total: 12.37 kcal Atomic # 7 Polarization: -5.06 SS G_CDS: -2.20 Total: -7.26 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -1.94 Total: -10.69 kcal Atomic # 14 Polarization: -4.08 SS G_CDS: 2.59 Total: -1.49 kcal Total: -16.55 3.73 -12.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_9599494.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.389 kcal (2) G-P(sol) polarization free energy of solvation -16.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds