Wall clock time and date at job start Sun Mar 7 2021 09:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86300 * 110.05958 * 2 1 4 4 C 1.87522 * 110.00213 * 238.63794 * 2 1 3 5 5 C 1.53934 * 106.84776 * 284.49838 * 4 2 1 6 6 C 1.52627 * 109.31005 * 302.79521 * 5 4 2 7 7 N 1.46530 * 111.93705 * 76.54573 * 6 5 4 8 8 N 1.36601 * 111.12684 * 156.83797 * 7 6 5 9 9 C 1.34780 * 119.99731 * 244.31145 * 8 7 6 10 10 O 1.21280 * 119.99959 * 359.97438 * 9 8 7 11 11 C 1.50694 * 119.99837 * 180.02562 * 9 8 7 12 12 N 1.46502 * 109.47299 * 179.97438 * 11 9 8 13 13 C 1.36837 * 125.06420 * 265.02368 * 12 11 9 14 14 C 1.34232 * 109.93807 * 179.97438 * 13 12 11 15 15 C 1.50695 * 126.50171 * 180.02562 * 14 13 12 16 16 O 1.42897 * 109.46926 * 104.97811 * 15 14 13 17 17 Si 1.86309 * 109.47055 * 344.98276 * 15 14 13 18 18 H 1.48496 * 109.47192 * 59.99524 * 17 15 14 19 19 H 1.48502 * 109.47059 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46860 * 299.99700 * 17 15 14 21 21 C 1.46491 * 106.99896 * 0.02562 * 14 13 12 22 22 C 1.39590 * 134.03686 * 180.02562 * 21 14 13 23 23 C 1.36668 * 119.76359 * 179.97438 * 22 21 14 24 24 C 1.38790 * 120.53106 * 359.97438 * 23 22 21 25 25 C 1.37787 * 120.66295 * 0.02562 * 24 23 22 26 26 C 1.37687 * 125.06254 * 84.71521 * 12 11 9 27 27 C 1.47730 * 111.20480 * 281.03160 * 7 6 5 28 28 H 1.08998 * 109.47222 * 298.63822 * 1 2 3 29 29 H 1.09007 * 109.47203 * 58.63488 * 1 2 3 30 30 H 1.08996 * 109.47410 * 178.63624 * 1 2 3 31 31 H 1.09001 * 109.46718 * 181.35940 * 3 2 1 32 32 H 1.08994 * 109.47747 * 301.36054 * 3 2 1 33 33 H 1.09002 * 109.47179 * 61.36506 * 3 2 1 34 34 H 1.08998 * 109.98002 * 43.82883 * 4 2 1 35 35 H 1.09000 * 109.97611 * 165.07518 * 4 2 1 36 36 H 1.09000 * 109.50033 * 62.74607 * 5 4 2 37 37 H 1.08994 * 109.49732 * 182.81469 * 5 4 2 38 38 H 1.09002 * 108.99733 * 197.14019 * 6 5 4 39 39 H 1.08994 * 108.99962 * 315.98232 * 6 5 4 40 40 H 0.97001 * 120.00235 * 64.31553 * 8 7 6 41 41 H 1.08996 * 109.47235 * 299.99912 * 11 9 8 42 42 H 1.09007 * 109.47495 * 59.99564 * 11 9 8 43 43 H 1.08004 * 125.02518 * 359.96467 * 13 12 11 44 44 H 1.08995 * 109.47771 * 224.98149 * 15 14 13 45 45 H 0.96701 * 114.00056 * 300.00128 * 16 15 14 46 46 H 1.07997 * 120.11866 * 359.97438 * 22 21 14 47 47 H 1.08002 * 119.73215 * 180.02562 * 23 22 21 48 48 H 1.07998 * 119.66508 * 180.02562 * 24 23 22 49 49 H 1.08002 * 120.11347 * 180.02562 * 25 24 23 50 50 H 1.09002 * 109.94931 * 300.84441 * 27 7 6 51 51 H 1.08998 * 109.94981 * 179.67542 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5020 1.7500 0.0000 4 6 2.5045 -0.9171 -1.5047 5 6 2.3105 -2.4189 -1.2280 6 6 3.0398 -2.7933 0.0594 7 7 2.3057 -2.3587 1.2507 8 7 2.6560 -3.1006 2.3428 9 6 1.7414 -3.8864 2.9452 10 8 0.6074 -3.9343 2.5178 11 6 2.1277 -4.7044 4.1503 12 7 0.9661 -5.4660 4.6163 13 6 0.1088 -5.0658 5.6049 14 6 -0.8457 -5.9921 5.7857 15 6 -1.9783 -5.9303 6.7779 16 8 -3.1951 -5.6262 6.0933 17 14 -1.6274 -4.6048 8.0392 18 1 -1.4961 -3.2932 7.3554 19 1 -2.7437 -4.5435 9.0165 20 1 -0.3627 -4.9209 8.7506 21 6 -0.5776 -7.0744 4.8356 22 6 -1.2026 -8.2886 4.5463 23 6 -0.6911 -9.0999 3.5728 24 6 0.4451 -8.7263 2.8686 25 6 1.0777 -7.5323 3.1380 26 6 0.5710 -6.6882 4.1206 27 6 2.5043 -0.9169 1.5043 28 1 -0.3633 0.4925 0.9019 29 1 -0.3634 0.5349 -0.8775 30 1 -0.3634 -1.0273 -0.0245 31 1 3.5917 1.7388 -0.0244 32 1 2.1244 2.2748 -0.8774 33 1 2.1640 2.2602 0.9020 34 1 1.9374 -0.6250 -2.3885 35 1 3.5620 -0.6977 -1.6516 36 1 1.2475 -2.6346 -1.1199 37 1 2.7165 -2.9971 -2.0580 38 1 3.1636 -3.8757 0.0951 39 1 4.0234 -2.3237 0.0594 40 1 3.5628 -3.0619 2.6849 41 1 2.9292 -5.3922 3.8809 42 1 2.4697 -4.0415 4.9451 43 1 0.1886 -4.1415 6.1579 44 1 -2.0746 -6.8930 7.2798 45 1 -3.1813 -4.7813 5.6231 46 1 -2.0873 -8.5857 5.0899 47 1 -1.1753 -10.0390 3.3491 48 1 0.8371 -9.3780 2.1019 49 1 1.9611 -7.2501 2.5843 50 1 3.5646 -0.7065 1.6440 51 1 1.9456 -0.6147 2.3901 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608516_9818708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:38:32 Heat of formation + Delta-G solvation = -2.151533 kcal Electronic energy + Delta-G solvation = -30731.003072 eV Core-core repulsion = 26755.668900 eV Total energy + Delta-G solvation = -3975.334172 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.173 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.44216 -40.88315 -38.65216 -37.92312 -37.39804 -35.01670 -34.01499 -32.09258 -31.03743 -30.09743 -29.48915 -28.76911 -28.47507 -27.67693 -25.89408 -24.66475 -23.55524 -22.58859 -21.95829 -21.66502 -20.56173 -18.97308 -18.42196 -18.18610 -17.58972 -17.15081 -16.79204 -16.33188 -16.05959 -15.78204 -15.61583 -15.47255 -15.12681 -14.93456 -14.64256 -14.62202 -14.51239 -14.43869 -14.26424 -14.16192 -13.91654 -13.66779 -13.60538 -13.37438 -13.29064 -13.21555 -13.04706 -12.56922 -12.40342 -12.27438 -12.17243 -12.10774 -12.07687 -11.81079 -11.57608 -11.39851 -10.94926 -10.84632 -10.52373 -10.35961 -10.26219 -10.17391 -9.82143 -8.98821 -8.49545 0.30811 0.81148 1.17939 1.25909 1.47484 1.49136 1.55718 1.60885 1.70794 1.74814 1.77286 1.98766 2.07139 2.45800 3.13166 3.23789 3.50191 3.52086 3.68512 3.78465 3.82437 3.86111 3.88474 4.03135 4.12414 4.24776 4.34908 4.40322 4.41136 4.52482 4.57212 4.59200 4.62128 4.63099 4.70451 4.76049 4.80142 4.84064 4.86292 4.93929 4.95006 5.02802 5.17328 5.29388 5.29781 5.35559 5.62589 5.66193 5.68233 5.84418 5.90049 5.93807 6.12654 6.18461 6.34869 6.40690 6.78569 7.40558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.444 4.444 2 Si 1.032 2.968 3 C -0.450 4.450 4 C -0.410 4.410 5 C -0.101 4.101 6 C 0.026 3.974 7 N -0.275 5.275 8 N -0.586 5.586 9 C 0.504 3.496 10 O -0.487 6.487 11 C 0.095 3.905 12 N -0.465 5.465 13 C 0.060 3.940 14 C -0.195 4.195 15 C -0.042 4.042 16 O -0.540 6.540 17 Si 0.944 3.056 18 H -0.254 1.254 19 H -0.250 1.250 20 H -0.250 1.250 21 C -0.084 4.084 22 C -0.064 4.064 23 C -0.146 4.146 24 C -0.096 4.096 25 C -0.128 4.128 26 C 0.110 3.890 27 C -0.259 4.259 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.045 0.955 40 H 0.378 0.622 41 H 0.118 0.882 42 H 0.122 0.878 43 H 0.165 0.835 44 H 0.113 0.887 45 H 0.375 0.625 46 H 0.124 0.876 47 H 0.123 0.877 48 H 0.124 0.876 49 H 0.114 0.886 50 H 0.054 0.946 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.424 2.996 -0.124 7.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.552 4.552 2 Si 1.225 2.775 3 C -0.558 4.558 4 C -0.497 4.497 5 C -0.139 4.139 6 C -0.101 4.101 7 N -0.091 5.091 8 N -0.332 5.332 9 C 0.288 3.712 10 O -0.357 6.357 11 C -0.033 4.033 12 N -0.148 5.148 13 C -0.065 4.065 14 C -0.203 4.203 15 C -0.154 4.154 16 O -0.345 6.345 17 Si 0.766 3.234 18 H -0.178 1.178 19 H -0.174 1.174 20 H -0.174 1.174 21 C -0.089 4.089 22 C -0.082 4.082 23 C -0.165 4.165 24 C -0.115 4.115 25 C -0.148 4.148 26 C 0.006 3.994 27 C -0.432 4.432 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.063 0.937 40 H 0.216 0.784 41 H 0.136 0.864 42 H 0.140 0.860 43 H 0.182 0.818 44 H 0.131 0.869 45 H 0.222 0.778 46 H 0.142 0.858 47 H 0.141 0.859 48 H 0.142 0.858 49 H 0.132 0.868 50 H 0.072 0.928 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.355 3.083 0.331 6.188 hybrid contribution 1.787 0.532 -0.358 1.899 sum 7.143 3.615 -0.028 8.005 Atomic orbital electron populations 1.26035 1.19838 1.05175 1.04163 0.79202 0.67970 0.65554 0.64759 1.26118 1.06314 1.18542 1.04873 1.26383 1.06127 1.02671 1.14470 1.21182 1.01960 0.95816 0.94963 1.22609 0.95868 1.01408 0.90253 1.63040 1.52473 0.99695 0.93933 1.45579 1.12831 1.45941 1.28815 1.20886 0.85844 0.79872 0.84632 1.90795 1.19118 1.62514 1.63255 1.21525 0.88565 0.96517 0.96679 1.43172 1.24227 1.16021 1.31424 1.21540 0.91963 0.99547 0.93438 1.20630 1.00116 0.96118 1.03418 1.24245 0.83797 1.08934 0.98383 1.86501 1.33734 1.43629 1.70616 0.85848 0.81150 0.77764 0.78594 1.17775 1.17391 1.17386 1.18909 0.96004 0.95718 0.98224 1.20316 0.98764 0.92145 0.97010 1.20672 0.97530 1.00479 0.97836 1.20818 0.95750 0.95547 0.99430 1.19945 1.01684 0.94780 0.98428 1.18167 0.96513 0.86639 0.98125 1.28068 1.04561 0.93129 1.17483 0.91387 0.91293 0.90386 0.91206 0.90636 0.91059 0.90024 0.90674 0.90244 0.90792 0.90281 0.93678 0.78421 0.86414 0.86048 0.81786 0.86875 0.77809 0.85773 0.85926 0.85776 0.86820 0.92759 0.89134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 0.13 8.65 101.05 0.87 1.00 16 2 Si 1.03 -2.69 11.99 -169.99 -2.04 -4.72 16 3 C -0.45 1.06 8.65 101.05 0.87 1.93 16 4 C -0.41 0.84 5.04 37.64 0.19 1.03 16 5 C -0.10 0.09 5.74 -26.44 -0.15 -0.06 16 6 C 0.03 -0.03 5.39 -4.22 -0.02 -0.05 16 7 N -0.28 -0.04 4.15 -56.85 -0.24 -0.27 16 8 N -0.59 0.56 4.72 31.22 0.15 0.71 16 9 C 0.50 0.60 8.00 -10.99 -0.09 0.51 16 10 O -0.49 -3.11 16.74 5.56 0.09 -3.02 16 11 C 0.09 -0.17 6.48 -5.20 -0.03 -0.20 16 12 N -0.46 -0.88 2.27 -115.71 -0.26 -1.14 16 13 C 0.06 0.10 9.89 -16.73 -0.17 -0.06 16 14 C -0.20 -0.55 5.57 -102.71 -0.57 -1.13 16 15 C -0.04 -0.06 3.06 36.00 0.11 0.05 16 16 O -0.54 -1.38 12.88 -35.23 -0.45 -1.83 16 17 Si 0.94 0.07 26.08 -169.99 -4.43 -4.37 16 18 H -0.25 0.00 7.03 56.52 0.40 0.40 16 19 H -0.25 -0.36 7.11 56.52 0.40 0.04 16 20 H -0.25 -0.08 7.11 56.52 0.40 0.32 16 21 C -0.08 -0.38 6.35 -105.14 -0.67 -1.04 16 22 C -0.06 -0.24 10.05 -39.64 -0.40 -0.64 16 23 C -0.15 -0.41 9.97 -39.94 -0.40 -0.80 16 24 C -0.10 -0.24 10.01 -39.54 -0.40 -0.63 16 25 C -0.13 -0.37 10.00 -39.43 -0.39 -0.76 16 26 C 0.11 0.42 6.80 -83.99 -0.57 -0.15 16 27 C -0.26 0.40 4.85 60.52 0.29 0.69 16 28 H 0.07 -0.01 7.96 -51.93 -0.41 -0.42 16 29 H 0.07 -0.05 7.96 -51.93 -0.41 -0.47 16 30 H 0.08 0.11 7.96 -51.93 -0.41 -0.30 16 31 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 32 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 33 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 34 H 0.08 -0.17 7.99 -51.93 -0.42 -0.59 16 35 H 0.07 -0.19 7.99 -51.93 -0.42 -0.61 16 36 H 0.08 0.03 7.96 -51.93 -0.41 -0.38 16 37 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 38 H 0.08 -0.04 8.04 -51.93 -0.42 -0.46 16 39 H 0.04 -0.10 7.77 -51.93 -0.40 -0.50 16 40 H 0.38 -1.56 8.83 -185.15 -1.63 -3.19 16 41 H 0.12 -0.48 8.14 -51.93 -0.42 -0.90 16 42 H 0.12 -0.61 8.12 -51.93 -0.42 -1.03 16 43 H 0.17 -0.16 6.29 -52.48 -0.33 -0.49 16 44 H 0.11 0.08 7.96 -51.93 -0.41 -0.33 16 45 H 0.37 -0.05 8.70 45.56 0.40 0.34 16 46 H 0.12 0.33 8.06 -52.49 -0.42 -0.10 16 47 H 0.12 0.10 8.06 -52.49 -0.42 -0.33 16 48 H 0.12 0.03 8.06 -52.49 -0.42 -0.39 16 49 H 0.11 0.11 8.06 -52.49 -0.42 -0.31 16 50 H 0.05 -0.15 7.92 -51.93 -0.41 -0.56 16 51 H 0.09 -0.08 7.99 -51.93 -0.41 -0.50 16 LS Contribution 416.45 15.07 6.28 6.28 Total: 0.00 -10.15 416.45 -11.54 -21.69 By element: Atomic # 1 Polarization: -3.90 SS G_CDS: -9.11 Total: -13.02 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -1.52 Total: -0.31 kcal Atomic # 7 Polarization: -0.35 SS G_CDS: -0.35 Total: -0.70 kcal Atomic # 8 Polarization: -4.49 SS G_CDS: -0.36 Total: -4.85 kcal Atomic # 14 Polarization: -2.62 SS G_CDS: -6.47 Total: -9.09 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -10.15 -11.54 -21.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_9818708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.540 kcal (2) G-P(sol) polarization free energy of solvation -10.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds