Wall clock time and date at job start Sun Mar 7 2021 09:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86300 * 110.05958 * 2 1 4 4 C 1.87522 * 110.00213 * 238.63794 * 2 1 3 5 5 C 1.53934 * 106.84776 * 284.49838 * 4 2 1 6 6 C 1.52627 * 109.31005 * 302.79521 * 5 4 2 7 7 N 1.46530 * 111.93705 * 76.54573 * 6 5 4 8 8 N 1.36601 * 111.12684 * 156.83797 * 7 6 5 9 9 C 1.34780 * 119.99731 * 244.31145 * 8 7 6 10 10 O 1.21280 * 119.99959 * 359.97438 * 9 8 7 11 11 C 1.50694 * 119.99837 * 180.02562 * 9 8 7 12 12 N 1.46502 * 109.47299 * 179.97438 * 11 9 8 13 13 C 1.36837 * 125.06420 * 265.02368 * 12 11 9 14 14 C 1.34232 * 109.93807 * 179.97438 * 13 12 11 15 15 C 1.50695 * 126.50171 * 180.02562 * 14 13 12 16 16 O 1.42897 * 109.46926 * 104.97811 * 15 14 13 17 17 Si 1.86309 * 109.47055 * 344.98276 * 15 14 13 18 18 H 1.48496 * 109.47192 * 59.99524 * 17 15 14 19 19 H 1.48502 * 109.47059 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46860 * 299.99700 * 17 15 14 21 21 C 1.46491 * 106.99896 * 0.02562 * 14 13 12 22 22 C 1.39590 * 134.03686 * 180.02562 * 21 14 13 23 23 C 1.36668 * 119.76359 * 179.97438 * 22 21 14 24 24 C 1.38790 * 120.53106 * 359.97438 * 23 22 21 25 25 C 1.37787 * 120.66295 * 0.02562 * 24 23 22 26 26 C 1.37687 * 125.06254 * 84.71521 * 12 11 9 27 27 C 1.47730 * 111.20480 * 281.03160 * 7 6 5 28 28 H 1.08998 * 109.47222 * 298.63822 * 1 2 3 29 29 H 1.09007 * 109.47203 * 58.63488 * 1 2 3 30 30 H 1.08996 * 109.47410 * 178.63624 * 1 2 3 31 31 H 1.09001 * 109.46718 * 181.35940 * 3 2 1 32 32 H 1.08994 * 109.47747 * 301.36054 * 3 2 1 33 33 H 1.09002 * 109.47179 * 61.36506 * 3 2 1 34 34 H 1.08998 * 109.98002 * 43.82883 * 4 2 1 35 35 H 1.09000 * 109.97611 * 165.07518 * 4 2 1 36 36 H 1.09000 * 109.50033 * 62.74607 * 5 4 2 37 37 H 1.08994 * 109.49732 * 182.81469 * 5 4 2 38 38 H 1.09002 * 108.99733 * 197.14019 * 6 5 4 39 39 H 1.08994 * 108.99962 * 315.98232 * 6 5 4 40 40 H 0.97001 * 120.00235 * 64.31553 * 8 7 6 41 41 H 1.08996 * 109.47235 * 299.99912 * 11 9 8 42 42 H 1.09007 * 109.47495 * 59.99564 * 11 9 8 43 43 H 1.08004 * 125.02518 * 359.96467 * 13 12 11 44 44 H 1.08995 * 109.47771 * 224.98149 * 15 14 13 45 45 H 0.96701 * 114.00056 * 300.00128 * 16 15 14 46 46 H 1.07997 * 120.11866 * 359.97438 * 22 21 14 47 47 H 1.08002 * 119.73215 * 180.02562 * 23 22 21 48 48 H 1.07998 * 119.66508 * 180.02562 * 24 23 22 49 49 H 1.08002 * 120.11347 * 180.02562 * 25 24 23 50 50 H 1.09002 * 109.94931 * 300.84441 * 27 7 6 51 51 H 1.08998 * 109.94981 * 179.67542 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5020 1.7500 0.0000 4 6 2.5045 -0.9171 -1.5047 5 6 2.3105 -2.4189 -1.2280 6 6 3.0398 -2.7933 0.0594 7 7 2.3057 -2.3587 1.2507 8 7 2.6560 -3.1006 2.3428 9 6 1.7414 -3.8864 2.9452 10 8 0.6074 -3.9343 2.5178 11 6 2.1277 -4.7044 4.1503 12 7 0.9661 -5.4660 4.6163 13 6 0.1088 -5.0658 5.6049 14 6 -0.8457 -5.9921 5.7857 15 6 -1.9783 -5.9303 6.7779 16 8 -3.1951 -5.6262 6.0933 17 14 -1.6274 -4.6048 8.0392 18 1 -1.4961 -3.2932 7.3554 19 1 -2.7437 -4.5435 9.0165 20 1 -0.3627 -4.9209 8.7506 21 6 -0.5776 -7.0744 4.8356 22 6 -1.2026 -8.2886 4.5463 23 6 -0.6911 -9.0999 3.5728 24 6 0.4451 -8.7263 2.8686 25 6 1.0777 -7.5323 3.1380 26 6 0.5710 -6.6882 4.1206 27 6 2.5043 -0.9169 1.5043 28 1 -0.3633 0.4925 0.9019 29 1 -0.3634 0.5349 -0.8775 30 1 -0.3634 -1.0273 -0.0245 31 1 3.5917 1.7388 -0.0244 32 1 2.1244 2.2748 -0.8774 33 1 2.1640 2.2602 0.9020 34 1 1.9374 -0.6250 -2.3885 35 1 3.5620 -0.6977 -1.6516 36 1 1.2475 -2.6346 -1.1199 37 1 2.7165 -2.9971 -2.0580 38 1 3.1636 -3.8757 0.0951 39 1 4.0234 -2.3237 0.0594 40 1 3.5628 -3.0619 2.6849 41 1 2.9292 -5.3922 3.8809 42 1 2.4697 -4.0415 4.9451 43 1 0.1886 -4.1415 6.1579 44 1 -2.0746 -6.8930 7.2798 45 1 -3.1813 -4.7813 5.6231 46 1 -2.0873 -8.5857 5.0899 47 1 -1.1753 -10.0390 3.3491 48 1 0.8371 -9.3780 2.1019 49 1 1.9611 -7.2501 2.5843 50 1 3.5646 -0.7065 1.6440 51 1 1.9456 -0.6147 2.3901 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_9818708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:38:30 Heat of formation + Delta-G solvation = 1.760484 kcal Electronic energy + Delta-G solvation = -30730.833434 eV Core-core repulsion = 26755.668900 eV Total energy + Delta-G solvation = -3975.164534 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.173 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.53588 -40.90549 -38.67690 -38.05870 -37.52649 -34.98093 -34.08299 -32.10615 -31.11040 -30.24057 -29.35752 -28.77853 -28.38046 -27.54085 -25.94331 -24.61515 -23.68846 -22.69730 -21.87843 -21.69720 -20.67782 -18.97222 -18.44774 -18.21808 -17.65107 -17.20532 -16.77160 -16.45545 -16.14685 -15.83494 -15.65334 -15.51318 -15.07129 -14.88606 -14.72052 -14.69513 -14.52315 -14.50126 -14.30163 -13.99367 -13.83493 -13.67851 -13.52247 -13.25855 -13.21456 -13.12184 -12.97469 -12.70060 -12.55804 -12.33187 -12.14637 -12.05654 -12.00186 -11.90179 -11.67898 -11.40215 -10.87805 -10.83349 -10.55072 -10.37416 -10.27180 -10.21453 -9.69015 -9.15864 -8.63126 0.14147 0.63675 1.21506 1.24003 1.48326 1.49675 1.55095 1.64281 1.72373 1.85868 1.90385 1.95392 2.18902 2.59666 2.95670 3.32007 3.58053 3.65269 3.68302 3.75138 3.82275 3.99582 4.04159 4.10988 4.14654 4.22805 4.30744 4.41577 4.51033 4.52132 4.60861 4.65738 4.71590 4.72580 4.76902 4.78540 4.79555 4.82095 4.83614 4.89950 4.90944 5.06763 5.14957 5.27365 5.44721 5.51632 5.56274 5.62991 5.67329 5.74375 5.75837 5.79329 6.14965 6.20845 6.23087 6.41861 6.75748 7.48067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.467 4.467 2 Si 1.093 2.907 3 C -0.454 4.454 4 C -0.415 4.415 5 C -0.104 4.104 6 C 0.028 3.972 7 N -0.304 5.304 8 N -0.573 5.573 9 C 0.505 3.495 10 O -0.550 6.550 11 C 0.093 3.907 12 N -0.466 5.466 13 C 0.062 3.938 14 C -0.216 4.216 15 C -0.053 4.053 16 O -0.560 6.560 17 Si 0.992 3.008 18 H -0.248 1.248 19 H -0.273 1.273 20 H -0.248 1.248 21 C -0.114 4.114 22 C -0.085 4.085 23 C -0.154 4.154 24 C -0.106 4.106 25 C -0.136 4.136 26 C 0.092 3.908 27 C -0.266 4.266 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.057 0.943 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.397 0.603 41 H 0.145 0.855 42 H 0.161 0.839 43 H 0.191 0.809 44 H 0.110 0.890 45 H 0.384 0.616 46 H 0.123 0.877 47 H 0.138 0.862 48 H 0.145 0.855 49 H 0.131 0.869 50 H 0.074 0.926 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.071 4.253 0.106 10.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.572 4.572 2 Si 1.282 2.718 3 C -0.562 4.562 4 C -0.501 4.501 5 C -0.143 4.143 6 C -0.099 4.099 7 N -0.120 5.120 8 N -0.319 5.319 9 C 0.290 3.710 10 O -0.424 6.424 11 C -0.033 4.033 12 N -0.149 5.149 13 C -0.063 4.063 14 C -0.223 4.223 15 C -0.162 4.162 16 O -0.366 6.366 17 Si 0.813 3.187 18 H -0.172 1.172 19 H -0.197 1.197 20 H -0.172 1.172 21 C -0.119 4.119 22 C -0.104 4.104 23 C -0.173 4.173 24 C -0.125 4.125 25 C -0.156 4.156 26 C -0.013 4.013 27 C -0.438 4.438 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.107 0.893 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.238 0.762 41 H 0.163 0.837 42 H 0.179 0.821 43 H 0.208 0.792 44 H 0.128 0.872 45 H 0.232 0.768 46 H 0.141 0.859 47 H 0.156 0.844 48 H 0.163 0.837 49 H 0.148 0.852 50 H 0.092 0.908 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.037 4.346 0.544 9.153 hybrid contribution 0.930 0.131 -0.480 1.054 sum 8.966 4.477 0.065 10.022 Atomic orbital electron populations 1.26379 1.23366 1.03489 1.03977 0.78275 0.64697 0.65101 0.63773 1.26147 1.06949 1.18208 1.04934 1.26460 1.07070 1.01725 1.14860 1.21194 1.00721 0.96917 0.95443 1.22584 0.96520 1.01153 0.89682 1.62984 1.53846 1.00624 0.94576 1.45438 1.13414 1.44897 1.28173 1.21421 0.85135 0.79543 0.84898 1.90778 1.21681 1.64723 1.65227 1.21902 0.87772 0.97094 0.96577 1.43395 1.24943 1.15581 1.30998 1.21979 0.91334 0.99872 0.93152 1.20838 1.01164 0.96314 1.03998 1.24529 0.83046 1.10051 0.98615 1.86458 1.34631 1.44509 1.71048 0.85166 0.80010 0.76745 0.76730 1.17154 1.19736 1.17186 1.19321 0.96834 0.96455 0.99255 1.20485 0.99250 0.92748 0.97878 1.20932 0.97824 1.00962 0.97570 1.21131 0.95649 0.95930 0.99827 1.20232 1.02270 0.94800 0.98292 1.18415 0.96734 0.87730 0.98469 1.28177 1.05797 0.92204 1.17657 0.91932 0.91123 0.92768 0.90265 0.90618 0.91035 0.90033 0.89302 0.92388 0.90442 0.90997 0.91737 0.76174 0.83713 0.82113 0.79193 0.87187 0.76798 0.85864 0.84440 0.83725 0.85154 0.90790 0.89875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 -0.52 8.65 113.37 0.98 0.46 16 2 Si 1.09 -6.04 11.99 68.60 0.82 -5.22 16 3 C -0.45 2.76 8.65 113.37 0.98 3.74 16 4 C -0.42 1.95 5.04 72.30 0.36 2.32 16 5 C -0.10 0.15 5.74 30.79 0.18 0.33 16 6 C 0.03 -0.07 5.39 86.25 0.46 0.40 16 7 N -0.30 0.00 4.15 -333.76 -1.39 -1.39 16 8 N -0.57 1.67 4.72 -173.53 -0.82 0.85 16 9 C 0.50 1.04 8.00 87.65 0.70 1.74 16 10 O -0.55 -7.79 16.74 -3.03 -0.05 -7.85 16 11 C 0.09 -0.47 6.48 85.63 0.56 0.09 16 12 N -0.47 -1.66 2.27 -519.99 -1.18 -2.84 16 13 C 0.06 0.21 9.89 83.00 0.82 1.03 16 14 C -0.22 -1.49 5.57 -18.63 -0.10 -1.59 16 15 C -0.05 -0.22 3.06 71.23 0.22 0.00 16 16 O -0.56 -3.92 12.88 -148.98 -1.92 -5.84 16 17 Si 0.99 0.03 26.08 68.60 1.79 1.82 16 18 H -0.25 0.28 7.03 99.48 0.70 0.98 16 19 H -0.27 -0.95 7.11 99.48 0.71 -0.24 16 20 H -0.25 0.10 7.11 99.48 0.71 0.81 16 21 C -0.11 -1.23 6.35 -20.20 -0.13 -1.36 16 22 C -0.09 -0.84 10.05 22.23 0.22 -0.62 16 23 C -0.15 -1.09 9.97 22.03 0.22 -0.87 16 24 C -0.11 -0.60 10.01 22.30 0.22 -0.38 16 25 C -0.14 -0.87 10.00 22.37 0.22 -0.64 16 26 C 0.09 0.78 6.80 39.03 0.27 1.05 16 27 C -0.27 1.07 4.85 127.53 0.62 1.69 16 28 H 0.06 0.10 7.96 -2.39 -0.02 0.08 16 29 H 0.07 0.00 7.96 -2.38 -0.02 -0.02 16 30 H 0.05 0.32 7.96 -2.39 -0.02 0.30 16 31 H 0.08 -0.59 7.96 -2.39 -0.02 -0.61 16 32 H 0.07 -0.43 7.96 -2.39 -0.02 -0.45 16 33 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 34 H 0.08 -0.36 7.99 -2.39 -0.02 -0.38 16 35 H 0.09 -0.62 7.99 -2.39 -0.02 -0.64 16 36 H 0.06 0.16 7.96 -2.39 -0.02 0.14 16 37 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 38 H 0.07 -0.09 8.04 -2.39 -0.02 -0.11 16 39 H 0.06 -0.42 7.77 -2.39 -0.02 -0.44 16 40 H 0.40 -4.14 8.83 -215.49 -1.90 -6.04 16 41 H 0.15 -1.52 8.14 -2.39 -0.02 -1.54 16 42 H 0.16 -2.11 8.12 -2.38 -0.02 -2.13 16 43 H 0.19 -0.61 6.29 -2.91 -0.02 -0.63 16 44 H 0.11 0.39 7.96 -2.39 -0.02 0.37 16 45 H 0.38 0.60 8.70 -74.06 -0.64 -0.04 16 46 H 0.12 1.02 8.06 -2.91 -0.02 1.00 16 47 H 0.14 0.38 8.06 -2.91 -0.02 0.35 16 48 H 0.15 0.07 8.06 -2.91 -0.02 0.05 16 49 H 0.13 0.23 8.06 -2.91 -0.02 0.21 16 50 H 0.07 -0.59 7.92 -2.39 -0.02 -0.61 16 51 H 0.08 -0.19 7.99 -2.39 -0.02 -0.21 16 Total: 0.00 -26.71 416.45 3.19 -23.52 By element: Atomic # 1 Polarization: -9.55 SS G_CDS: -0.87 Total: -10.42 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: 6.80 Total: 7.38 kcal Atomic # 7 Polarization: 0.00 SS G_CDS: -3.39 Total: -3.38 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: -1.97 Total: -13.69 kcal Atomic # 14 Polarization: -6.01 SS G_CDS: 2.61 Total: -3.40 kcal Total: -26.71 3.19 -23.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_9818708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.276 kcal (2) G-P(sol) polarization free energy of solvation -26.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds