Wall clock time and date at job start Sun Mar 7 2021 09:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36763 * 125.80430 * 2 1 4 4 C 1.47261 * 126.94327 * 0.02562 * 3 2 1 5 5 O 1.21629 * 119.99783 * 0.02562 * 4 3 2 6 6 N 1.34780 * 120.00100 * 180.02562 * 4 3 2 7 7 N 1.36602 * 120.00029 * 174.99311 * 6 4 3 8 8 C 1.46355 * 110.99846 * 235.43522 * 7 6 4 9 9 C 1.52621 * 111.89123 * 156.80459 * 8 7 6 10 10 C 1.53923 * 109.31489 * 76.51975 * 9 8 7 11 11 Si 1.87525 * 106.85023 * 302.79785 * 10 9 8 12 12 C 1.86295 * 110.00415 * 163.09496 * 11 10 9 13 13 C 1.86299 * 110.00117 * 284.39983 * 11 10 9 14 14 C 1.47717 * 110.99913 * 111.08667 * 7 6 4 15 15 C 1.46691 * 106.11561 * 180.02562 * 3 2 1 16 16 C 1.34482 * 106.33223 * 359.97438 * 15 3 2 17 17 C 1.50701 * 125.57318 * 179.97438 * 16 15 3 18 18 O 1.42899 * 109.47044 * 120.02143 * 17 16 15 19 19 Si 1.86305 * 109.47060 * 0.02581 * 17 16 15 20 20 H 1.48500 * 109.47170 * 179.97438 * 19 17 16 21 21 H 1.48501 * 109.46974 * 300.00010 * 19 17 16 22 22 H 1.48496 * 109.47122 * 59.99918 * 19 17 16 23 23 N 1.34661 * 125.79984 * 180.26901 * 2 1 3 24 24 H 1.09002 * 109.47230 * 89.99562 * 1 2 3 25 25 H 1.09002 * 109.47602 * 210.00199 * 1 2 3 26 26 H 1.09005 * 109.46616 * 330.00538 * 1 2 3 27 27 H 0.96998 * 119.99716 * 354.99110 * 6 4 3 28 28 H 1.09004 * 108.99582 * 277.42597 * 8 7 6 29 29 H 1.08999 * 109.00001 * 36.25973 * 8 7 6 30 30 H 1.09005 * 109.50111 * 196.47395 * 9 8 7 31 31 H 1.08997 * 109.49652 * 316.56545 * 9 8 7 32 32 H 1.09004 * 109.97485 * 62.12851 * 10 9 8 33 33 H 1.08993 * 109.98309 * 183.37143 * 10 9 8 34 34 H 1.09001 * 109.47133 * 59.99890 * 12 11 10 35 35 H 1.09005 * 109.47527 * 180.02562 * 12 11 10 36 36 H 1.09003 * 109.47310 * 300.00138 * 12 11 10 37 37 H 1.09001 * 109.47063 * 60.00045 * 13 11 10 38 38 H 1.09003 * 109.46886 * 179.97438 * 13 11 10 39 39 H 1.08989 * 109.47285 * 299.99898 * 13 11 10 40 40 H 1.09002 * 109.94871 * 303.85329 * 14 7 6 41 41 H 1.08995 * 109.95215 * 65.11032 * 14 7 6 42 42 H 1.07998 * 126.83625 * 179.97438 * 15 3 2 43 43 H 1.08999 * 109.47315 * 240.02505 * 17 16 15 44 44 H 0.96699 * 114.00228 * 300.00093 * 18 17 16 45 45 H 0.97002 * 124.84874 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3071 1.1092 0.0000 4 6 1.8703 2.5155 0.0005 5 8 0.6840 2.7839 0.0015 6 7 2.7852 3.5053 -0.0001 7 7 2.3832 4.8068 -0.1028 8 6 3.0394 5.4709 -1.2300 9 6 2.2423 6.6753 -1.7233 10 6 2.4436 7.8518 -0.7514 11 14 1.9058 7.2552 0.9431 12 6 2.5717 8.3923 2.2601 13 6 0.0462 7.1930 1.0362 14 6 2.6192 5.5350 1.1605 15 6 3.6882 0.6150 -0.0006 16 6 3.6095 -0.7276 -0.0004 17 6 4.7818 -1.6745 -0.0014 18 8 4.7299 -2.4980 1.1653 19 14 6.3686 -0.6983 -0.0022 20 1 7.5239 -1.6314 -0.0026 21 1 6.4226 0.1576 -1.2146 22 1 6.4242 0.1570 1.2104 23 7 2.2947 -1.0922 -0.0051 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3633 0.8901 0.5138 27 1 3.7289 3.2934 0.0725 28 1 4.0293 5.8041 -0.9181 29 1 3.1466 4.7586 -2.0480 30 1 2.5903 6.9600 -2.7162 31 1 1.1842 6.4175 -1.7683 32 1 3.4946 8.1401 -0.7284 33 1 1.8320 8.6993 -1.0606 34 1 2.1898 9.4001 2.0969 35 1 2.2546 8.0375 3.2408 36 1 3.6606 8.4043 2.2131 37 1 -0.3328 6.5079 0.2779 38 1 -0.2567 6.8450 2.0238 39 1 -0.3598 8.1892 0.8614 40 1 2.1170 5.0254 1.9829 41 1 3.6890 5.5984 1.3590 42 1 4.5891 1.2106 -0.0012 43 1 4.7410 -2.3024 -0.8914 44 1 4.7621 -2.0050 1.9965 45 1 1.9733 -2.0074 -0.0091 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608516_9865296.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:38:48 Heat of formation + Delta-G solvation = -37.497370 kcal Electronic energy + Delta-G solvation = -24349.204001 eV Core-core repulsion = 20912.553159 eV Total energy + Delta-G solvation = -3436.650842 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.158 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.44399 -40.40996 -38.22211 -37.73981 -34.79319 -32.94627 -32.46416 -30.97245 -29.36396 -28.99058 -28.35451 -27.53514 -25.86813 -24.69889 -22.86887 -21.86792 -21.41238 -20.51529 -19.18393 -18.22910 -17.22205 -16.88551 -16.71675 -16.51067 -15.81398 -15.50825 -15.23495 -14.95484 -14.83958 -14.72988 -14.47883 -14.29959 -14.21206 -14.02995 -13.79046 -13.75469 -13.51217 -13.37203 -13.21807 -13.09033 -12.96853 -12.94485 -12.35464 -12.15138 -12.02529 -11.97817 -11.95832 -11.15526 -10.81240 -10.77624 -10.50936 -10.30908 -9.96295 -9.84089 -9.59658 -9.14432 0.85015 0.94481 1.18984 1.37315 1.43942 1.49436 1.76997 1.82052 1.87368 2.11474 2.38428 2.60093 2.77586 3.29868 3.49939 3.57860 3.87900 4.01310 4.05424 4.19200 4.20041 4.36132 4.45901 4.50188 4.55070 4.66021 4.69410 4.70395 4.70648 4.73860 4.77322 4.88006 4.94374 4.95519 4.99940 5.07915 5.24812 5.27949 5.41409 5.46085 5.66709 5.74402 5.87059 5.89245 6.35393 6.39670 6.54460 6.73299 7.85536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.122 3.878 3 C -0.231 4.231 4 C 0.609 3.391 5 O -0.522 6.522 6 N -0.585 5.585 7 N -0.274 5.274 8 C 0.026 3.974 9 C -0.100 4.100 10 C -0.410 4.410 11 Si 1.030 2.970 12 C -0.450 4.450 13 C -0.442 4.442 14 C -0.259 4.259 15 C -0.168 4.168 16 C -0.013 4.013 17 C -0.063 4.063 18 O -0.542 6.542 19 Si 0.972 3.028 20 H -0.251 1.251 21 H -0.248 1.248 22 H -0.249 1.249 23 N -0.534 5.534 24 H 0.081 0.919 25 H 0.066 0.934 26 H 0.104 0.896 27 H 0.376 0.624 28 H 0.044 0.956 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.090 0.910 41 H 0.050 0.950 42 H 0.143 0.857 43 H 0.118 0.882 44 H 0.380 0.620 45 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.001 -0.188 0.155 3.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.003 3.997 3 C -0.242 4.242 4 C 0.398 3.602 5 O -0.397 6.397 6 N -0.329 5.329 7 N -0.089 5.089 8 C -0.102 4.102 9 C -0.138 4.138 10 C -0.496 4.496 11 Si 1.223 2.777 12 C -0.558 4.558 13 C -0.550 4.550 14 C -0.433 4.433 15 C -0.192 4.192 16 C -0.123 4.123 17 C -0.173 4.173 18 O -0.348 6.348 19 Si 0.792 3.208 20 H -0.175 1.175 21 H -0.171 1.171 22 H -0.172 1.172 23 N -0.129 5.129 24 H 0.100 0.900 25 H 0.085 0.915 26 H 0.123 0.877 27 H 0.214 0.786 28 H 0.062 0.938 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.108 0.892 41 H 0.069 0.931 42 H 0.160 0.840 43 H 0.136 0.864 44 H 0.228 0.772 45 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 2.398 -0.207 -0.399 2.440 hybrid contribution 1.022 -0.408 0.566 1.238 sum 3.421 -0.615 0.167 3.480 Atomic orbital electron populations 1.20651 0.86502 1.04580 1.03892 1.20413 0.93856 0.85259 1.00160 1.19924 0.92594 0.91879 1.19827 1.17079 0.85099 0.82691 0.75338 1.90735 1.16187 1.83849 1.48959 1.45368 1.08502 1.01675 1.77348 1.62922 1.52872 0.90132 1.03017 1.22556 0.96478 0.97366 0.93813 1.21180 1.01530 0.92431 0.98706 1.26377 1.05544 1.01907 1.15748 0.79228 0.67960 0.63697 0.66835 1.26123 1.06422 1.10624 1.12663 1.26011 1.19766 1.04307 1.04961 1.28063 1.04579 1.16171 0.94476 1.21748 0.96202 0.92732 1.08535 1.20716 0.85223 0.94656 1.11672 1.24798 1.02629 0.97951 0.91890 1.86507 1.96930 1.35767 1.15551 0.85357 0.74851 0.78451 0.82120 1.17464 1.17094 1.17192 1.41541 1.05328 1.08834 1.57226 0.90030 0.91518 0.87723 0.78590 0.93800 0.90102 0.90918 0.90239 0.90766 0.90155 0.90771 0.91082 0.91290 0.90270 0.91389 0.91473 0.89155 0.93109 0.83981 0.86377 0.77240 0.74226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.05 9.88 36.00 0.36 0.30 16 2 C 0.12 0.18 7.17 -81.89 -0.59 -0.40 16 3 C -0.23 -0.60 6.29 -103.35 -0.65 -1.25 16 4 C 0.61 2.64 7.91 -12.59 -0.10 2.54 16 5 O -0.52 -3.84 15.14 5.25 0.08 -3.76 16 6 N -0.58 -1.30 4.70 30.40 0.14 -1.15 16 7 N -0.27 -0.54 4.15 -56.97 -0.24 -0.78 16 8 C 0.03 0.01 5.38 -4.31 -0.02 -0.02 16 9 C -0.10 0.02 5.74 -26.44 -0.15 -0.13 16 10 C -0.41 0.52 5.03 37.64 0.19 0.71 16 11 Si 1.03 -1.58 11.99 -169.99 -2.04 -3.62 16 12 C -0.45 0.62 8.65 101.05 0.87 1.49 16 13 C -0.44 -0.19 8.65 101.05 0.87 0.69 16 14 C -0.26 -0.10 4.86 60.51 0.29 0.19 16 15 C -0.17 -0.10 9.03 -37.50 -0.34 -0.44 16 16 C -0.01 0.00 6.48 -81.87 -0.53 -0.53 16 17 C -0.06 0.11 3.08 36.01 0.11 0.22 16 18 O -0.54 0.58 12.88 -35.23 -0.45 0.13 16 19 Si 0.97 -1.82 25.84 -169.99 -4.39 -6.21 16 20 H -0.25 0.12 7.11 56.52 0.40 0.52 16 21 H -0.25 0.31 7.11 56.52 0.40 0.72 16 22 H -0.25 0.40 7.11 56.52 0.40 0.80 16 23 N -0.53 0.18 5.90 -5.43 -0.03 0.15 16 24 H 0.08 0.02 8.14 -51.93 -0.42 -0.41 16 25 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 26 H 0.10 0.26 6.46 -51.93 -0.34 -0.07 16 27 H 0.38 -0.01 7.96 -185.16 -1.47 -1.48 16 28 H 0.04 -0.04 7.78 -51.93 -0.40 -0.44 16 29 H 0.08 0.05 8.03 -51.93 -0.42 -0.37 16 30 H 0.07 -0.06 8.14 -51.93 -0.42 -0.49 16 31 H 0.08 0.06 7.96 -51.93 -0.41 -0.36 16 32 H 0.07 -0.13 7.99 -51.93 -0.42 -0.54 16 33 H 0.08 -0.12 7.99 -51.93 -0.42 -0.54 16 34 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 35 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 36 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 37 H 0.08 0.16 7.96 -51.93 -0.41 -0.26 16 38 H 0.07 0.05 7.96 -51.93 -0.41 -0.37 16 39 H 0.07 -0.02 7.96 -51.93 -0.41 -0.43 16 40 H 0.09 0.13 7.99 -51.93 -0.41 -0.28 16 41 H 0.05 -0.03 7.92 -51.93 -0.41 -0.45 16 42 H 0.14 -0.19 5.86 -52.49 -0.31 -0.49 16 43 H 0.12 -0.30 7.96 -51.93 -0.41 -0.72 16 44 H 0.38 -1.47 8.70 45.56 0.40 -1.08 16 45 H 0.42 -1.03 8.96 -40.82 -0.37 -1.40 16 LS Contribution 363.88 15.07 5.48 5.48 Total: 0.00 -7.50 363.88 -9.07 -16.57 By element: Atomic # 1 Polarization: -2.25 SS G_CDS: -7.94 Total: -10.18 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 0.32 Total: 3.38 kcal Atomic # 7 Polarization: -1.66 SS G_CDS: -0.13 Total: -1.78 kcal Atomic # 8 Polarization: -3.26 SS G_CDS: -0.37 Total: -3.64 kcal Atomic # 14 Polarization: -3.40 SS G_CDS: -6.43 Total: -9.83 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -7.50 -9.07 -16.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_9865296.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.929 kcal (2) G-P(sol) polarization free energy of solvation -7.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds