Wall clock time and date at job start Sun Mar 7 2021 09:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36763 * 125.80430 * 2 1 4 4 C 1.47261 * 126.94327 * 0.02562 * 3 2 1 5 5 O 1.21629 * 119.99783 * 0.02562 * 4 3 2 6 6 N 1.34780 * 120.00100 * 180.02562 * 4 3 2 7 7 N 1.36602 * 120.00029 * 174.99311 * 6 4 3 8 8 C 1.46355 * 110.99846 * 235.43522 * 7 6 4 9 9 C 1.52621 * 111.89123 * 156.80459 * 8 7 6 10 10 C 1.53923 * 109.31489 * 76.51975 * 9 8 7 11 11 Si 1.87525 * 106.85023 * 302.79785 * 10 9 8 12 12 C 1.86295 * 110.00415 * 163.09496 * 11 10 9 13 13 C 1.86299 * 110.00117 * 284.39983 * 11 10 9 14 14 C 1.47717 * 110.99913 * 111.08667 * 7 6 4 15 15 C 1.46691 * 106.11561 * 180.02562 * 3 2 1 16 16 C 1.34482 * 106.33223 * 359.97438 * 15 3 2 17 17 C 1.50701 * 125.57318 * 179.97438 * 16 15 3 18 18 O 1.42899 * 109.47044 * 120.02143 * 17 16 15 19 19 Si 1.86305 * 109.47060 * 0.02581 * 17 16 15 20 20 H 1.48500 * 109.47170 * 179.97438 * 19 17 16 21 21 H 1.48501 * 109.46974 * 300.00010 * 19 17 16 22 22 H 1.48496 * 109.47122 * 59.99918 * 19 17 16 23 23 N 1.34661 * 125.79984 * 180.26901 * 2 1 3 24 24 H 1.09002 * 109.47230 * 89.99562 * 1 2 3 25 25 H 1.09002 * 109.47602 * 210.00199 * 1 2 3 26 26 H 1.09005 * 109.46616 * 330.00538 * 1 2 3 27 27 H 0.96998 * 119.99716 * 354.99110 * 6 4 3 28 28 H 1.09004 * 108.99582 * 277.42597 * 8 7 6 29 29 H 1.08999 * 109.00001 * 36.25973 * 8 7 6 30 30 H 1.09005 * 109.50111 * 196.47395 * 9 8 7 31 31 H 1.08997 * 109.49652 * 316.56545 * 9 8 7 32 32 H 1.09004 * 109.97485 * 62.12851 * 10 9 8 33 33 H 1.08993 * 109.98309 * 183.37143 * 10 9 8 34 34 H 1.09001 * 109.47133 * 59.99890 * 12 11 10 35 35 H 1.09005 * 109.47527 * 180.02562 * 12 11 10 36 36 H 1.09003 * 109.47310 * 300.00138 * 12 11 10 37 37 H 1.09001 * 109.47063 * 60.00045 * 13 11 10 38 38 H 1.09003 * 109.46886 * 179.97438 * 13 11 10 39 39 H 1.08989 * 109.47285 * 299.99898 * 13 11 10 40 40 H 1.09002 * 109.94871 * 303.85329 * 14 7 6 41 41 H 1.08995 * 109.95215 * 65.11032 * 14 7 6 42 42 H 1.07998 * 126.83625 * 179.97438 * 15 3 2 43 43 H 1.08999 * 109.47315 * 240.02505 * 17 16 15 44 44 H 0.96699 * 114.00228 * 300.00093 * 18 17 16 45 45 H 0.97002 * 124.84874 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3071 1.1092 0.0000 4 6 1.8703 2.5155 0.0005 5 8 0.6840 2.7839 0.0015 6 7 2.7852 3.5053 -0.0001 7 7 2.3832 4.8068 -0.1028 8 6 3.0394 5.4709 -1.2300 9 6 2.2423 6.6753 -1.7233 10 6 2.4436 7.8518 -0.7514 11 14 1.9058 7.2552 0.9431 12 6 2.5717 8.3923 2.2601 13 6 0.0462 7.1930 1.0362 14 6 2.6192 5.5350 1.1605 15 6 3.6882 0.6150 -0.0006 16 6 3.6095 -0.7276 -0.0004 17 6 4.7818 -1.6745 -0.0014 18 8 4.7299 -2.4980 1.1653 19 14 6.3686 -0.6983 -0.0022 20 1 7.5239 -1.6314 -0.0026 21 1 6.4226 0.1576 -1.2146 22 1 6.4242 0.1570 1.2104 23 7 2.2947 -1.0922 -0.0051 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3633 0.8901 0.5138 27 1 3.7289 3.2934 0.0725 28 1 4.0293 5.8041 -0.9181 29 1 3.1466 4.7586 -2.0480 30 1 2.5903 6.9600 -2.7162 31 1 1.1842 6.4175 -1.7683 32 1 3.4946 8.1401 -0.7284 33 1 1.8320 8.6993 -1.0606 34 1 2.1898 9.4001 2.0969 35 1 2.2546 8.0375 3.2408 36 1 3.6606 8.4043 2.2131 37 1 -0.3328 6.5079 0.2779 38 1 -0.2567 6.8450 2.0238 39 1 -0.3598 8.1892 0.8614 40 1 2.1170 5.0254 1.9829 41 1 3.6890 5.5984 1.3590 42 1 4.5891 1.2106 -0.0012 43 1 4.7410 -2.3024 -0.8914 44 1 4.7621 -2.0050 1.9965 45 1 1.9733 -2.0074 -0.0091 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_9865296.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:38:47 Heat of formation + Delta-G solvation = -34.398830 kcal Electronic energy + Delta-G solvation = -24349.069638 eV Core-core repulsion = 20912.553159 eV Total energy + Delta-G solvation = -3436.516479 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.158 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.49003 -40.58542 -38.36976 -37.68815 -34.88155 -32.96775 -32.56331 -31.04064 -29.31372 -28.97731 -28.33239 -27.51919 -25.91091 -24.71521 -22.95173 -21.90084 -21.43396 -20.67011 -19.15057 -18.33015 -17.28233 -16.93066 -16.78415 -16.47166 -15.78552 -15.55562 -15.29524 -14.98003 -14.84716 -14.73132 -14.53119 -14.35255 -14.26457 -13.95351 -13.83280 -13.78053 -13.47118 -13.39070 -13.17345 -13.09288 -12.96261 -12.95335 -12.27079 -12.08799 -12.00814 -11.93890 -11.86985 -11.24905 -10.77996 -10.71857 -10.65503 -10.28923 -10.14310 -9.89835 -9.65177 -9.20588 0.69639 1.06252 1.20031 1.49980 1.52183 1.57633 1.85199 1.90214 1.94236 2.16255 2.39164 2.53863 2.65198 3.45406 3.51680 3.56962 3.86263 4.01012 4.04130 4.18172 4.20667 4.42887 4.45468 4.53339 4.56024 4.67105 4.68309 4.70747 4.77565 4.82248 4.83694 4.86438 4.87201 4.92554 4.95384 5.12562 5.17641 5.32532 5.49585 5.59254 5.61020 5.68152 5.82638 5.87490 6.34856 6.43645 6.59271 6.61123 7.65826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.116 3.884 3 C -0.256 4.256 4 C 0.602 3.398 5 O -0.565 6.565 6 N -0.579 5.579 7 N -0.297 5.297 8 C 0.025 3.975 9 C -0.102 4.102 10 C -0.411 4.411 11 Si 1.091 2.909 12 C -0.453 4.453 13 C -0.462 4.462 14 C -0.272 4.272 15 C -0.174 4.174 16 C -0.008 4.008 17 C -0.059 4.059 18 O -0.554 6.554 19 Si 1.004 2.996 20 H -0.270 1.270 21 H -0.255 1.255 22 H -0.251 1.251 23 N -0.525 5.525 24 H 0.083 0.917 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.387 0.613 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.158 0.842 43 H 0.129 0.871 44 H 0.391 0.609 45 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.469 -0.067 0.179 4.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.004 4.004 3 C -0.267 4.267 4 C 0.393 3.607 5 O -0.443 6.443 6 N -0.322 5.322 7 N -0.113 5.113 8 C -0.102 4.102 9 C -0.141 4.141 10 C -0.497 4.497 11 Si 1.279 2.721 12 C -0.562 4.562 13 C -0.568 4.568 14 C -0.444 4.444 15 C -0.198 4.198 16 C -0.118 4.118 17 C -0.169 4.169 18 O -0.360 6.360 19 Si 0.826 3.174 20 H -0.195 1.195 21 H -0.178 1.178 22 H -0.174 1.174 23 N -0.121 5.121 24 H 0.101 0.899 25 H 0.107 0.893 26 H 0.099 0.901 27 H 0.227 0.773 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.175 0.825 43 H 0.147 0.853 44 H 0.241 0.759 45 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 3.876 -0.110 -0.363 3.895 hybrid contribution 0.558 -0.488 0.571 0.936 sum 4.434 -0.599 0.208 4.479 Atomic orbital electron populations 1.20587 0.86219 1.04476 1.03945 1.20536 0.94282 0.85646 0.99983 1.19996 0.94006 0.91313 1.21422 1.17448 0.84826 0.83722 0.74717 1.90703 1.17815 1.84585 1.51238 1.45302 1.08782 1.01770 1.76372 1.62926 1.54091 0.90151 1.04175 1.22590 0.97267 0.97294 0.93078 1.21200 1.00547 0.92739 0.99578 1.26401 1.06540 1.01580 1.15195 0.78326 0.65076 0.61945 0.66711 1.26143 1.06985 1.10714 1.12345 1.26304 1.22732 1.04013 1.03782 1.28316 1.05554 1.17166 0.93340 1.21939 0.95852 0.93278 1.08723 1.20983 0.85575 0.94703 1.10557 1.24866 1.01816 0.97888 0.92282 1.86485 1.96852 1.36421 1.16290 0.84888 0.73598 0.77415 0.81517 1.19524 1.17840 1.17413 1.41544 1.05178 1.08990 1.56408 0.89889 0.89300 0.90055 0.77315 0.92073 0.90744 0.90051 0.91810 0.89427 0.89537 0.90285 0.91265 0.90476 0.92384 0.92096 0.90807 0.90819 0.91719 0.82471 0.85294 0.75905 0.72960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.22 9.88 71.24 0.70 0.48 16 2 C 0.12 0.44 7.17 41.78 0.30 0.74 16 3 C -0.26 -1.65 6.29 -19.04 -0.12 -1.77 16 4 C 0.60 6.50 7.91 86.61 0.69 7.19 16 5 O -0.56 -10.07 15.14 -4.12 -0.06 -10.13 16 6 N -0.58 -3.35 4.70 -175.99 -0.83 -4.18 16 7 N -0.30 -1.54 4.15 -334.16 -1.39 -2.93 16 8 C 0.03 0.02 5.38 86.28 0.46 0.49 16 9 C -0.10 0.02 5.74 30.78 0.18 0.20 16 10 C -0.41 1.39 5.03 72.29 0.36 1.76 16 11 Si 1.09 -3.25 11.99 68.60 0.82 -2.42 16 12 C -0.45 1.71 8.65 113.37 0.98 2.69 16 13 C -0.46 -1.17 8.65 113.37 0.98 -0.19 16 14 C -0.27 -0.40 4.86 127.53 0.62 0.22 16 15 C -0.17 -0.21 9.03 23.62 0.21 0.01 16 16 C -0.01 0.01 6.48 40.98 0.27 0.27 16 17 C -0.06 0.25 3.08 71.24 0.22 0.47 16 18 O -0.55 1.75 12.88 -148.98 -1.92 -0.16 16 19 Si 1.00 -4.41 25.84 68.60 1.77 -2.64 16 20 H -0.27 0.29 7.11 99.48 0.71 1.00 16 21 H -0.25 0.82 7.11 99.48 0.71 1.53 16 22 H -0.25 1.03 7.11 99.48 0.71 1.74 16 23 N -0.52 0.49 5.90 -171.08 -1.01 -0.51 16 24 H 0.08 0.15 8.14 -2.39 -0.02 0.13 16 25 H 0.09 -0.25 8.14 -2.39 -0.02 -0.27 16 26 H 0.08 0.63 6.46 -2.38 -0.02 0.61 16 27 H 0.39 0.24 7.96 -215.50 -1.72 -1.48 16 28 H 0.06 -0.17 7.78 -2.38 -0.02 -0.19 16 29 H 0.07 0.14 8.03 -2.39 -0.02 0.12 16 30 H 0.08 -0.16 8.14 -2.38 -0.02 -0.18 16 31 H 0.06 0.19 7.96 -2.39 -0.02 0.17 16 32 H 0.09 -0.48 7.99 -2.39 -0.02 -0.50 16 33 H 0.09 -0.36 7.99 -2.39 -0.02 -0.38 16 34 H 0.08 -0.33 7.96 -2.39 -0.02 -0.35 16 35 H 0.07 -0.21 7.96 -2.38 -0.02 -0.22 16 36 H 0.08 -0.38 7.96 -2.39 -0.02 -0.40 16 37 H 0.06 0.39 7.96 -2.39 -0.02 0.37 16 38 H 0.06 0.21 7.96 -2.39 -0.02 0.19 16 39 H 0.07 0.04 7.96 -2.39 -0.02 0.02 16 40 H 0.07 0.35 7.99 -2.39 -0.02 0.33 16 41 H 0.06 -0.12 7.92 -2.39 -0.02 -0.14 16 42 H 0.16 -0.47 5.86 -2.91 -0.02 -0.49 16 43 H 0.13 -0.83 7.96 -2.39 -0.02 -0.85 16 44 H 0.39 -3.40 8.70 -74.06 -0.64 -4.04 16 45 H 0.43 -2.41 8.96 -92.71 -0.83 -3.24 16 Total: 0.00 -18.73 363.88 1.82 -16.92 By element: Atomic # 1 Polarization: -5.07 SS G_CDS: -1.43 Total: -6.50 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: 5.85 Total: 12.56 kcal Atomic # 7 Polarization: -4.40 SS G_CDS: -3.22 Total: -7.62 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: -1.98 Total: -10.30 kcal Atomic # 14 Polarization: -7.66 SS G_CDS: 2.60 Total: -5.06 kcal Total: -18.73 1.82 -16.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_9865296.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.482 kcal (2) G-P(sol) polarization free energy of solvation -18.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds