Wall clock time and date at job start Sun Mar 7 2021 09:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42898 * 109.47179 * 2 1 4 4 C 1.35902 * 117.00259 * 84.94553 * 3 2 1 5 5 C 1.38736 * 120.05205 * 174.27520 * 4 3 2 6 6 C 1.38144 * 119.93796 * 179.74650 * 5 4 3 7 7 C 1.38269 * 120.05757 * 0.50897 * 6 5 4 8 8 C 1.50700 * 119.94456 * 179.74463 * 7 6 5 9 9 O 1.42898 * 109.47136 * 245.02177 * 8 7 6 10 10 Si 1.86302 * 109.47075 * 5.02431 * 8 7 6 11 11 H 1.48500 * 109.47163 * 59.99834 * 10 8 7 12 12 H 1.48496 * 109.47158 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46933 * 299.99729 * 10 8 7 14 14 C 1.38265 * 120.10961 * 359.76630 * 7 6 5 15 15 C 1.38144 * 120.05545 * 359.97438 * 14 7 6 16 16 C 1.50693 * 109.47140 * 239.99736 * 2 1 3 17 17 O 1.21304 * 120.00372 * 120.00048 * 16 2 1 18 18 N 1.34787 * 120.00015 * 300.00024 * 16 2 1 19 19 C 1.40762 * 119.99869 * 179.97438 * 18 16 2 20 20 C 1.35750 * 126.07641 * 179.97438 * 19 18 16 21 21 N 1.35813 * 107.56171 * 179.97438 * 20 19 18 22 22 C 1.46501 * 126.05652 * 179.97438 * 21 20 19 23 23 Si 1.86297 * 109.47143 * 90.00109 * 22 21 20 24 24 C 1.86293 * 109.46953 * 60.00371 * 23 22 21 25 25 C 1.86298 * 109.47145 * 300.00184 * 23 22 21 26 26 C 1.86302 * 109.47035 * 180.02562 * 23 22 21 27 27 N 1.40067 * 107.89360 * 0.23386 * 21 20 19 28 28 C 1.30832 * 108.36697 * 359.60867 * 27 21 20 29 29 H 1.09000 * 109.46974 * 300.00419 * 1 2 3 30 30 H 1.09001 * 109.46605 * 60.00348 * 1 2 3 31 31 H 1.08992 * 109.46520 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46605 * 119.99652 * 2 1 3 33 33 H 1.07995 * 120.03264 * 0.02562 * 5 4 3 34 34 H 1.07999 * 119.97105 * 180.23681 * 6 5 4 35 35 H 1.09000 * 109.46983 * 125.01742 * 8 7 6 36 36 H 0.96698 * 113.99971 * 60.00077 * 9 8 7 37 37 H 1.08004 * 119.96780 * 179.97438 * 14 7 6 38 38 H 1.08001 * 120.02525 * 179.97438 * 15 14 7 39 39 H 0.96999 * 119.99586 * 0.02562 * 18 16 2 40 40 H 1.07996 * 126.22327 * 0.02562 * 20 19 18 41 41 H 1.09002 * 109.47014 * 330.00155 * 22 21 20 42 42 H 1.09001 * 109.47312 * 210.00749 * 22 21 20 43 43 H 1.09007 * 109.47383 * 299.99531 * 24 23 22 44 44 H 1.08997 * 109.47653 * 60.00219 * 24 23 22 45 45 H 1.09008 * 109.46995 * 180.02562 * 24 23 22 46 46 H 1.09003 * 109.46947 * 180.02562 * 25 23 22 47 47 H 1.09000 * 109.47569 * 300.00010 * 25 23 22 48 48 H 1.08998 * 109.47163 * 59.99836 * 25 23 22 49 49 H 1.09006 * 109.47226 * 299.99698 * 26 23 22 50 50 H 1.09002 * 109.47378 * 59.99889 * 26 23 22 51 51 H 1.09003 * 109.47200 * 180.02562 * 26 23 22 52 52 H 1.08002 * 125.83078 * 180.17394 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.1115 1.9646 1.2062 5 6 2.6777 3.2282 1.2929 6 6 2.7786 3.8557 2.5195 7 6 2.3255 3.2211 3.6614 8 6 2.4421 3.9057 4.9989 9 8 3.3412 3.1719 5.8327 10 14 3.0909 5.6352 4.7569 11 1 2.1565 6.3976 3.8903 12 1 3.2052 6.3100 6.0747 13 1 4.4276 5.5768 4.1125 14 6 1.7661 1.9595 3.5782 15 6 1.6580 1.3299 2.3533 16 6 2.0324 -0.7104 -1.2304 17 8 2.7298 -0.1210 -2.0289 18 7 1.7068 -2.0009 -1.4436 19 6 2.1756 -2.6643 -2.5932 20 6 1.9252 -3.9556 -2.9289 21 7 2.5567 -4.2029 -4.1056 22 6 2.5546 -5.4735 -4.8349 23 14 1.1182 -5.5065 -6.0207 24 6 1.2778 -4.0975 -7.2288 25 6 -0.4752 -5.3330 -5.0711 26 6 1.1151 -7.1227 -6.9476 27 7 3.2152 -3.0298 -4.4955 28 6 2.9840 -2.1087 -3.5956 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3632 -1.0276 0.0005 32 1 1.8933 -0.5138 0.8901 33 1 3.0351 3.7227 0.4019 34 1 3.2158 4.8409 2.5871 35 1 1.4610 3.9486 5.4718 36 1 4.2355 3.0935 5.4734 37 1 1.4133 1.4657 4.4717 38 1 1.2214 0.3442 2.2890 39 1 1.1488 -2.4721 -0.8053 40 1 1.3311 -4.6583 -2.3636 41 1 2.4613 -6.2980 -4.1280 42 1 3.4869 -5.5751 -5.3904 43 1 1.2793 -3.1520 -6.6863 44 1 2.2100 -4.1990 -7.7845 45 1 0.4370 -4.1165 -7.9224 46 1 -1.3156 -5.3528 -5.7649 47 1 -0.5686 -6.1574 -4.3642 48 1 -0.4736 -4.3876 -4.5285 49 1 2.0474 -7.2246 -7.5032 50 1 1.0216 -7.9469 -6.2404 51 1 0.2749 -7.1418 -7.6417 52 1 3.3552 -1.0947 -3.6188 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_10157680.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:38:58 Heat of formation + Delta-G solvation = -27.525592 kcal Electronic energy + Delta-G solvation = -31391.973512 eV Core-core repulsion = 27096.856847 eV Total energy + Delta-G solvation = -4295.116666 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 377.173 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.42582 -41.64489 -40.46947 -39.04659 -37.14828 -36.02666 -33.95664 -33.12589 -32.06387 -31.47315 -30.25830 -29.51288 -28.38509 -28.33036 -27.16708 -26.59960 -25.39544 -24.21371 -23.03980 -22.37300 -21.90222 -20.92734 -19.52936 -18.72119 -18.34342 -17.94944 -17.12664 -16.92924 -16.65010 -16.42606 -16.33864 -16.11397 -15.67738 -15.51165 -15.30162 -15.06660 -14.95540 -14.48307 -14.31143 -14.19841 -14.15582 -14.04872 -13.86110 -13.83520 -13.67641 -13.43196 -13.32453 -13.29652 -13.21291 -13.13836 -13.02197 -12.88379 -12.24908 -12.22482 -12.11433 -12.09736 -12.02677 -11.77527 -11.52745 -11.39410 -10.89521 -10.85244 -10.80367 -10.36871 -10.04652 -10.04075 -9.22313 -8.66261 0.23949 0.32976 0.72118 1.18713 1.21238 1.26604 1.45738 1.52744 1.59103 1.69655 1.87386 1.92675 2.02565 2.12129 2.48897 2.57594 2.65477 3.42385 3.59292 3.65796 3.73370 3.75168 3.82283 3.87714 3.93319 3.98684 4.25462 4.26473 4.33958 4.54217 4.58027 4.63183 4.66508 4.67808 4.69778 4.72146 4.73985 4.74649 4.83493 4.84744 4.87282 4.88944 4.99406 5.04355 5.12128 5.19152 5.29374 5.48707 5.50483 5.60840 5.65751 5.67463 5.73894 6.06992 6.25851 6.42294 6.67285 6.72686 7.08944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.072 3.928 3 O -0.312 6.312 4 C 0.121 3.879 5 C -0.162 4.162 6 C -0.091 4.091 7 C -0.161 4.161 8 C -0.067 4.067 9 O -0.552 6.552 10 Si 0.972 3.028 11 H -0.260 1.260 12 H -0.275 1.275 13 H -0.257 1.257 14 C -0.051 4.051 15 C -0.205 4.205 16 C 0.512 3.488 17 O -0.555 6.555 18 N -0.617 5.617 19 C -0.026 4.026 20 C 0.038 3.962 21 N -0.339 5.339 22 C -0.190 4.190 23 Si 1.093 2.907 24 C -0.477 4.477 25 C -0.457 4.457 26 C -0.455 4.455 27 N -0.320 5.320 28 C 0.020 3.980 29 H 0.088 0.912 30 H 0.059 0.941 31 H 0.113 0.887 32 H 0.132 0.868 33 H 0.129 0.871 34 H 0.133 0.867 35 H 0.128 0.872 36 H 0.388 0.612 37 H 0.148 0.852 38 H 0.160 0.840 39 H 0.432 0.568 40 H 0.226 0.774 41 H 0.135 0.865 42 H 0.101 0.899 43 H 0.045 0.955 44 H 0.061 0.939 45 H 0.068 0.932 46 H 0.071 0.929 47 H 0.090 0.910 48 H 0.061 0.939 49 H 0.071 0.929 50 H 0.086 0.914 51 H 0.074 0.926 52 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.032 -8.570 4.282 11.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.012 3.988 3 O -0.226 6.226 4 C 0.076 3.924 5 C -0.181 4.181 6 C -0.109 4.109 7 C -0.162 4.162 8 C -0.179 4.179 9 O -0.359 6.359 10 Si 0.797 3.203 11 H -0.184 1.184 12 H -0.200 1.200 13 H -0.181 1.181 14 C -0.069 4.069 15 C -0.224 4.224 16 C 0.299 3.701 17 O -0.432 6.432 18 N -0.265 5.265 19 C -0.130 4.130 20 C -0.111 4.111 21 N -0.122 5.122 22 C -0.353 4.353 23 Si 1.283 2.717 24 C -0.581 4.581 25 C -0.565 4.565 26 C -0.564 4.564 27 N -0.144 5.144 28 C -0.165 4.165 29 H 0.107 0.893 30 H 0.078 0.922 31 H 0.132 0.868 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.151 0.849 35 H 0.146 0.854 36 H 0.237 0.763 37 H 0.166 0.834 38 H 0.177 0.823 39 H 0.271 0.729 40 H 0.242 0.758 41 H 0.153 0.847 42 H 0.120 0.880 43 H 0.064 0.936 44 H 0.080 0.920 45 H 0.087 0.913 46 H 0.090 0.910 47 H 0.109 0.891 48 H 0.080 0.920 49 H 0.090 0.910 50 H 0.105 0.895 51 H 0.093 0.907 52 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -5.068 -7.620 2.646 9.526 hybrid contribution 0.129 0.260 0.293 0.412 sum -4.939 -7.360 2.938 9.338 Atomic orbital electron populations 1.22417 0.90184 1.06006 1.04529 1.22325 0.97218 0.82159 0.97072 1.86179 1.81523 1.26900 1.27977 1.19222 0.95823 0.93008 0.84380 1.20527 1.04118 0.94444 0.98992 1.20988 0.98514 0.99661 0.91715 1.20354 1.03415 0.97086 0.95309 1.24828 0.98847 1.04530 0.89652 1.86478 1.25042 1.76985 1.47396 0.85372 0.80377 0.75427 0.79078 1.18434 1.20007 1.18069 1.21046 0.94855 0.93385 0.97565 1.21584 1.06323 1.02719 0.91744 1.20633 0.80161 0.81799 0.87541 1.90655 1.38464 1.66646 1.47426 1.42366 1.51508 1.10405 1.22267 1.17745 1.08666 0.93328 0.93252 1.22579 1.02070 0.96187 0.90266 1.48309 1.37100 1.09753 1.17000 1.27409 1.18219 0.82094 1.07613 0.78281 0.63992 0.65371 0.64095 1.26539 1.04050 1.15032 1.12445 1.26197 1.16072 1.05004 1.09217 1.26144 1.04983 1.16300 1.08949 1.77402 1.19787 0.92835 1.24378 1.24273 0.99714 0.99992 0.92551 0.89271 0.92222 0.86818 0.85108 0.85283 0.84926 0.85415 0.76311 0.83410 0.82293 0.72867 0.75807 0.84732 0.88007 0.93597 0.92010 0.91271 0.90995 0.89092 0.91960 0.91022 0.89514 0.90736 0.80479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 1.21 9.07 71.99 0.65 1.87 16 2 C 0.07 -0.11 2.64 29.85 0.08 -0.03 16 3 O -0.31 -2.07 9.33 -73.42 -0.69 -2.75 16 4 C 0.12 0.49 6.60 22.50 0.15 0.64 16 5 C -0.16 -0.81 9.99 22.37 0.22 -0.58 16 6 C -0.09 -0.20 8.66 22.25 0.19 0.00 16 7 C -0.16 -0.02 5.35 -19.85 -0.11 -0.13 16 8 C -0.07 0.12 2.80 71.24 0.20 0.32 16 9 O -0.55 0.31 12.83 -148.98 -1.91 -1.61 16 10 Si 0.97 -0.59 25.14 68.60 1.72 1.13 16 11 H -0.26 -0.26 7.11 99.48 0.71 0.45 16 12 H -0.27 -0.75 7.11 99.48 0.71 -0.05 16 13 H -0.26 -0.01 7.04 99.48 0.70 0.69 16 14 C -0.05 0.07 9.68 22.25 0.22 0.29 16 15 C -0.21 0.30 8.24 22.36 0.18 0.49 16 16 C 0.51 2.20 7.20 87.65 0.63 2.83 16 17 O -0.56 -8.40 13.66 15.93 0.22 -8.18 16 18 N -0.62 1.33 5.37 -304.05 -1.63 -0.30 16 19 C -0.03 -0.08 6.90 37.62 0.26 0.17 16 20 C 0.04 -0.10 11.44 83.50 0.96 0.85 16 21 N -0.34 -0.48 3.01 -182.93 -0.55 -1.04 16 22 C -0.19 1.09 5.59 127.77 0.71 1.80 16 23 Si 1.09 -8.14 12.79 68.60 0.88 -7.26 16 24 C -0.48 -0.66 8.65 113.37 0.98 0.32 16 25 C -0.46 3.36 8.65 113.37 0.98 4.34 16 26 C -0.46 3.57 8.65 113.37 0.98 4.55 16 27 N -0.32 -3.37 12.56 -56.77 -0.71 -4.09 16 28 C 0.02 0.22 10.84 85.33 0.92 1.15 16 29 H 0.09 -0.73 6.91 -2.39 -0.02 -0.74 16 30 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 31 H 0.11 -1.59 7.56 -2.39 -0.02 -1.61 16 32 H 0.13 -1.01 6.31 -2.39 -0.02 -1.02 16 33 H 0.13 0.67 8.06 -2.91 -0.02 0.64 16 34 H 0.13 -0.01 4.86 -2.91 -0.01 -0.03 16 35 H 0.13 -0.52 7.96 -2.39 -0.02 -0.54 16 36 H 0.39 -2.41 8.70 -74.06 -0.64 -3.06 16 37 H 0.15 -0.72 8.06 -2.91 -0.02 -0.74 16 38 H 0.16 -1.26 5.43 -2.91 -0.02 -1.28 16 39 H 0.43 -5.15 8.24 -92.71 -0.76 -5.92 16 40 H 0.23 -2.99 8.06 -2.91 -0.02 -3.02 16 41 H 0.13 -1.69 7.96 -2.39 -0.02 -1.71 16 42 H 0.10 -0.44 7.96 -2.39 -0.02 -0.46 16 43 H 0.04 0.30 7.96 -2.38 -0.02 0.28 16 44 H 0.06 0.16 7.96 -2.39 -0.02 0.14 16 45 H 0.07 0.04 7.96 -2.38 -0.02 0.02 16 46 H 0.07 -0.44 7.96 -2.39 -0.02 -0.46 16 47 H 0.09 -1.00 7.96 -2.39 -0.02 -1.01 16 48 H 0.06 -0.31 7.96 -2.39 -0.02 -0.33 16 49 H 0.07 -0.50 7.96 -2.38 -0.02 -0.52 16 50 H 0.09 -0.88 7.96 -2.39 -0.02 -0.90 16 51 H 0.07 -0.51 7.96 -2.39 -0.02 -0.53 16 52 H 0.18 2.81 5.92 -2.91 -0.02 2.79 16 Total: 0.00 -30.10 428.71 5.83 -24.26 By element: Atomic # 1 Polarization: -19.35 SS G_CDS: 0.29 Total: -19.06 kcal Atomic # 6 Polarization: 10.66 SS G_CDS: 8.22 Total: 18.88 kcal Atomic # 7 Polarization: -2.53 SS G_CDS: -2.90 Total: -5.42 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: -2.38 Total: -12.54 kcal Atomic # 14 Polarization: -8.73 SS G_CDS: 2.60 Total: -6.13 kcal Total: -30.10 5.83 -24.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_10157680.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.261 kcal (2) G-P(sol) polarization free energy of solvation -30.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds