Wall clock time and date at job start Sun Mar 7 2021 09:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86305 * 109.47313 * 2 1 4 4 C 1.86298 * 109.47110 * 240.00092 * 2 1 3 5 5 C 1.86298 * 109.47311 * 120.00200 * 2 1 3 6 6 N 1.46498 * 109.47003 * 59.99784 * 5 2 1 7 7 C 1.35833 * 126.05423 * 90.00379 * 6 5 2 8 8 C 1.35764 * 107.56047 * 179.97438 * 7 6 5 9 9 N 1.40720 * 126.07969 * 179.97438 * 8 7 6 10 10 C 1.34778 * 119.99525 * 180.02562 * 9 8 7 11 11 O 1.21720 * 120.00278 * 0.02562 * 10 9 8 12 12 C 1.46670 * 119.99568 * 179.97438 * 10 9 8 13 13 C 1.37874 * 126.23064 * 179.71332 * 12 10 9 14 14 C 1.39843 * 107.08795 * 179.90295 * 13 12 10 15 15 C 1.50699 * 126.07192 * 180.13705 * 14 13 12 16 16 O 1.42904 * 109.47016 * 65.23849 * 15 14 13 17 17 Si 1.86304 * 109.47311 * 185.24094 * 15 14 13 18 18 H 1.48496 * 109.47023 * 59.99899 * 17 15 14 19 19 H 1.48504 * 109.46938 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46872 * 300.00012 * 17 15 14 21 21 C 1.35450 * 107.86215 * 0.35944 * 14 13 12 22 22 N 1.35554 * 108.87276 * 359.77733 * 21 14 13 23 23 C 1.40258 * 107.83645 * 0.02562 * 8 7 6 24 24 N 1.30831 * 108.33761 * 359.97438 * 23 8 7 25 25 H 1.08999 * 109.47091 * 300.00255 * 1 2 3 26 26 H 1.09000 * 109.47188 * 59.99759 * 1 2 3 27 27 H 1.09000 * 109.47173 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47287 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47191 * 300.00239 * 3 2 1 30 30 H 1.08998 * 109.46732 * 59.99755 * 3 2 1 31 31 H 1.08990 * 109.47226 * 299.99947 * 4 2 1 32 32 H 1.09010 * 109.47066 * 59.99861 * 4 2 1 33 33 H 1.09002 * 109.47421 * 179.97438 * 4 2 1 34 34 H 1.08999 * 109.46671 * 299.99802 * 5 2 1 35 35 H 1.08996 * 109.46961 * 180.02562 * 5 2 1 36 36 H 1.08006 * 126.21860 * 0.25793 * 7 6 5 37 37 H 0.97001 * 119.99986 * 359.97438 * 9 8 7 38 38 H 1.07997 * 126.45570 * 0.02562 * 13 12 10 39 39 H 1.09000 * 109.46943 * 305.24216 * 15 14 13 40 40 H 0.96695 * 113.99853 * 60.00552 * 16 15 14 41 41 H 1.08006 * 125.56418 * 179.80629 * 21 14 13 42 42 H 0.97002 * 125.67991 * 180.02562 * 22 21 14 43 43 H 1.07997 * 125.83059 * 179.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4840 -0.8783 1.5211 6 7 1.9957 -2.2594 1.5210 7 6 2.6258 -3.3302 0.9720 8 6 1.8453 -4.4199 1.1877 9 7 2.1289 -5.7364 0.7796 10 6 1.2626 -6.7301 1.0600 11 8 0.2349 -6.4888 1.6658 12 6 1.5580 -8.1022 0.6341 13 6 0.7701 -9.2117 0.8559 14 6 1.4276 -10.3040 0.2813 15 6 0.9391 -11.7296 0.2730 16 8 -0.2586 -11.8183 -0.5015 17 14 2.2445 -12.8291 -0.4739 18 1 3.4890 -12.7370 0.3309 19 1 1.7628 -14.2338 -0.4826 20 1 2.5218 -12.3928 -1.8660 21 6 2.5838 -9.8541 -0.2622 22 7 2.6750 -8.5177 -0.0546 23 6 0.7054 -3.9998 1.8888 24 7 0.7964 -2.7098 2.0873 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.5740 1.7565 -0.0005 29 1 2.1207 2.2703 -0.8900 30 1 2.1207 2.2703 0.8900 31 1 2.1207 -1.9058 -1.5212 32 1 2.1206 -0.3643 -2.4112 33 1 3.5740 -0.8778 -1.5214 34 1 2.1207 -0.3644 2.4110 35 1 3.5740 -0.8778 1.5212 36 1 3.5773 -3.3178 0.4610 37 1 2.9474 -5.9285 0.2959 38 1 -0.1774 -9.2328 1.3738 39 1 0.7355 -12.0499 1.2948 40 1 -0.1515 -11.5481 -1.4237 41 1 3.3137 -10.4611 -0.7773 42 1 3.4056 -7.9488 -0.3436 43 1 -0.1084 -4.6330 2.2098 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608520_10543058.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:43:05 Heat of formation + Delta-G solvation = 21.503534 kcal Electronic energy + Delta-G solvation = -24217.058494 eV Core-core repulsion = 20616.625550 eV Total energy + Delta-G solvation = -3600.432944 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.62701 -42.09312 -39.98894 -37.63287 -35.91744 -33.71013 -32.61979 -31.09472 -30.13680 -29.68902 -28.60494 -28.46002 -27.24788 -26.34640 -24.40736 -22.51946 -21.88836 -21.15256 -20.56520 -19.79512 -18.42566 -17.56504 -17.02687 -16.67744 -16.65122 -16.24159 -15.83411 -15.75988 -15.15361 -14.94674 -14.75687 -14.65811 -14.38486 -14.33480 -14.08322 -14.02184 -13.95523 -13.81868 -13.58254 -13.49320 -13.43540 -13.27039 -13.18734 -12.39345 -12.20734 -12.14436 -11.78388 -11.66669 -11.37814 -11.07051 -11.05832 -10.95037 -10.34773 -10.03364 -9.97770 -9.41108 -8.58329 0.28198 0.83016 1.19173 1.26308 1.40298 1.44840 1.48363 1.55671 1.65614 1.80917 1.89506 1.90001 1.94702 2.16577 2.39332 2.50293 3.59385 3.63131 3.71150 3.81490 3.85611 4.00712 4.23523 4.33304 4.46329 4.53596 4.56206 4.58650 4.59909 4.62711 4.71995 4.75931 4.77101 4.79464 4.89150 5.00735 5.14133 5.30281 5.37255 5.56588 5.57037 5.76725 5.91226 6.00454 6.15650 6.36531 6.69246 6.80331 7.10538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.447 4.447 2 Si 1.020 2.980 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.169 4.169 6 N -0.343 5.343 7 C 0.014 3.986 8 C -0.004 4.004 9 N -0.644 5.644 10 C 0.592 3.408 11 O -0.512 6.512 12 C -0.056 4.056 13 C -0.068 4.068 14 C -0.210 4.210 15 C -0.046 4.046 16 O -0.540 6.540 17 Si 0.946 3.054 18 H -0.252 1.252 19 H -0.252 1.252 20 H -0.254 1.254 21 C 0.030 3.970 22 N -0.536 5.536 23 C 0.049 3.951 24 N -0.280 5.280 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.175 0.825 37 H 0.402 0.598 38 H 0.154 0.846 39 H 0.115 0.885 40 H 0.374 0.626 41 H 0.171 0.829 42 H 0.418 0.582 43 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.269 1.322 -4.297 8.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.555 4.555 2 Si 1.214 2.786 3 C -0.558 4.558 4 C -0.558 4.558 5 C -0.335 4.335 6 N -0.126 5.126 7 C -0.135 4.135 8 C -0.108 4.108 9 N -0.289 5.289 10 C 0.381 3.619 11 O -0.387 6.387 12 C -0.169 4.169 13 C -0.094 4.094 14 C -0.217 4.217 15 C -0.158 4.158 16 O -0.345 6.345 17 Si 0.769 3.231 18 H -0.175 1.175 19 H -0.175 1.175 20 H -0.177 1.177 21 C -0.107 4.107 22 N -0.132 5.132 23 C -0.137 4.137 24 N -0.103 5.103 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.124 0.876 35 H 0.117 0.883 36 H 0.192 0.808 37 H 0.236 0.764 38 H 0.172 0.828 39 H 0.133 0.867 40 H 0.221 0.779 41 H 0.188 0.812 42 H 0.255 0.745 43 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 6.529 2.002 -3.119 7.508 hybrid contribution 1.409 -0.098 -1.007 1.735 sum 7.938 1.904 -4.126 9.147 Atomic orbital electron populations 1.26070 1.20006 1.04949 1.04443 0.79368 0.68144 0.66363 0.64716 1.26096 1.06356 1.18243 1.05116 1.26129 1.06074 1.08279 1.15285 1.26962 1.04417 0.83215 1.18897 1.47984 1.15616 1.06368 1.42624 1.21844 1.00154 0.86574 1.04880 1.17602 0.98792 0.84405 1.10036 1.42588 1.23700 1.05100 1.57485 1.16968 0.83188 0.82456 0.79304 1.90767 1.25433 1.82188 1.40264 1.20246 0.92395 0.94143 1.10074 1.21234 0.99450 0.89190 0.99526 1.19907 0.97036 0.97043 1.07715 1.24297 0.95042 0.95585 1.00836 1.86525 1.32735 1.89515 1.25678 0.85797 0.77410 0.79802 0.80097 1.17543 1.17544 1.17735 1.21883 1.00278 0.83867 1.04666 1.41913 1.18532 1.08436 1.44362 1.24493 0.98899 0.91757 0.98579 1.77476 1.01147 1.12195 1.19451 0.90993 0.91216 0.90972 0.90996 0.90564 0.90832 0.91155 0.90721 0.91165 0.87633 0.88325 0.80791 0.76354 0.82820 0.86676 0.77878 0.81180 0.74468 0.77778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.10 8.65 101.05 0.87 0.98 16 2 Si 1.02 -3.25 12.79 -169.99 -2.17 -5.42 16 3 C -0.45 1.35 8.65 101.05 0.87 2.22 16 4 C -0.45 1.13 8.65 101.05 0.87 2.01 16 5 C -0.17 0.34 5.59 59.85 0.33 0.68 16 6 N -0.34 -0.36 3.01 -9.16 -0.03 -0.39 16 7 C 0.01 0.00 11.44 -16.67 -0.19 -0.19 16 8 C 0.00 -0.01 6.90 -83.90 -0.58 -0.59 16 9 N -0.64 0.14 5.47 -11.22 -0.06 0.08 16 10 C 0.59 1.36 7.76 -12.86 -0.10 1.26 16 11 O -0.51 -2.94 14.03 5.17 0.07 -2.87 16 12 C -0.06 -0.04 7.06 -81.98 -0.58 -0.62 16 13 C -0.07 -0.12 10.59 -39.11 -0.41 -0.53 16 14 C -0.21 0.02 5.43 -105.02 -0.57 -0.55 16 15 C -0.05 0.03 3.02 36.01 0.11 0.14 16 16 O -0.54 -0.32 12.88 -35.23 -0.45 -0.77 16 17 Si 0.95 -1.53 25.89 -169.99 -4.40 -5.93 16 18 H -0.25 0.31 7.11 56.52 0.40 0.71 16 19 H -0.25 -0.09 7.11 56.52 0.40 0.32 16 20 H -0.25 0.48 7.11 56.52 0.40 0.88 16 21 C 0.03 -0.06 10.45 -16.90 -0.18 -0.24 16 22 N -0.54 1.39 5.99 -9.39 -0.06 1.34 16 23 C 0.05 0.21 10.84 -17.22 -0.19 0.02 16 24 N -0.28 -1.18 12.56 30.70 0.39 -0.80 16 25 H 0.07 0.00 7.96 -51.93 -0.41 -0.41 16 26 H 0.07 -0.04 7.96 -51.93 -0.41 -0.46 16 27 H 0.07 0.13 7.96 -51.93 -0.41 -0.29 16 28 H 0.07 -0.25 7.96 -51.93 -0.41 -0.66 16 29 H 0.08 -0.20 7.96 -51.93 -0.41 -0.62 16 30 H 0.07 -0.21 7.96 -51.93 -0.41 -0.62 16 31 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 32 H 0.07 -0.16 7.96 -51.92 -0.41 -0.58 16 33 H 0.07 -0.24 7.96 -51.93 -0.41 -0.65 16 34 H 0.11 -0.20 7.96 -51.93 -0.41 -0.61 16 35 H 0.10 -0.42 7.96 -51.93 -0.41 -0.83 16 36 H 0.17 -0.70 8.06 -52.48 -0.42 -1.12 16 37 H 0.40 -1.64 7.95 -40.82 -0.32 -1.96 16 38 H 0.15 0.37 8.06 -52.49 -0.42 -0.05 16 39 H 0.12 -0.11 7.96 -51.93 -0.41 -0.52 16 40 H 0.37 -1.02 8.70 45.56 0.40 -0.62 16 41 H 0.17 -0.77 6.21 -52.48 -0.33 -1.10 16 42 H 0.42 -2.55 8.19 -40.82 -0.33 -2.88 16 43 H 0.21 1.06 5.91 -52.49 -0.31 0.75 16 LS Contribution 367.60 15.07 5.54 5.54 Total: 0.00 -10.07 367.60 -6.41 -16.47 By element: Atomic # 1 Polarization: -6.35 SS G_CDS: -5.50 Total: -11.85 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: 0.27 Total: 4.59 kcal Atomic # 7 Polarization: 0.00 SS G_CDS: 0.24 Total: 0.24 kcal Atomic # 8 Polarization: -3.26 SS G_CDS: -0.38 Total: -3.64 kcal Atomic # 14 Polarization: -4.77 SS G_CDS: -6.57 Total: -11.35 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -10.07 -6.41 -16.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_10543058.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.976 kcal (2) G-P(sol) polarization free energy of solvation -10.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds