Wall clock time and date at job start Sun Mar 7 2021 09:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86305 * 109.47313 * 2 1 4 4 C 1.86298 * 109.47110 * 240.00092 * 2 1 3 5 5 C 1.86298 * 109.47311 * 120.00200 * 2 1 3 6 6 N 1.46498 * 109.47003 * 59.99784 * 5 2 1 7 7 C 1.35833 * 126.05423 * 90.00379 * 6 5 2 8 8 C 1.35764 * 107.56047 * 179.97438 * 7 6 5 9 9 N 1.40720 * 126.07969 * 179.97438 * 8 7 6 10 10 C 1.34778 * 119.99525 * 180.02562 * 9 8 7 11 11 O 1.21720 * 120.00278 * 0.02562 * 10 9 8 12 12 C 1.46670 * 119.99568 * 179.97438 * 10 9 8 13 13 C 1.37874 * 126.23064 * 179.71332 * 12 10 9 14 14 C 1.39843 * 107.08795 * 179.90295 * 13 12 10 15 15 C 1.50699 * 126.07192 * 180.13705 * 14 13 12 16 16 O 1.42904 * 109.47016 * 65.23849 * 15 14 13 17 17 Si 1.86304 * 109.47311 * 185.24094 * 15 14 13 18 18 H 1.48496 * 109.47023 * 59.99899 * 17 15 14 19 19 H 1.48504 * 109.46938 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46872 * 300.00012 * 17 15 14 21 21 C 1.35450 * 107.86215 * 0.35944 * 14 13 12 22 22 N 1.35554 * 108.87276 * 359.77733 * 21 14 13 23 23 C 1.40258 * 107.83645 * 0.02562 * 8 7 6 24 24 N 1.30831 * 108.33761 * 359.97438 * 23 8 7 25 25 H 1.08999 * 109.47091 * 300.00255 * 1 2 3 26 26 H 1.09000 * 109.47188 * 59.99759 * 1 2 3 27 27 H 1.09000 * 109.47173 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47287 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47191 * 300.00239 * 3 2 1 30 30 H 1.08998 * 109.46732 * 59.99755 * 3 2 1 31 31 H 1.08990 * 109.47226 * 299.99947 * 4 2 1 32 32 H 1.09010 * 109.47066 * 59.99861 * 4 2 1 33 33 H 1.09002 * 109.47421 * 179.97438 * 4 2 1 34 34 H 1.08999 * 109.46671 * 299.99802 * 5 2 1 35 35 H 1.08996 * 109.46961 * 180.02562 * 5 2 1 36 36 H 1.08006 * 126.21860 * 0.25793 * 7 6 5 37 37 H 0.97001 * 119.99986 * 359.97438 * 9 8 7 38 38 H 1.07997 * 126.45570 * 0.02562 * 13 12 10 39 39 H 1.09000 * 109.46943 * 305.24216 * 15 14 13 40 40 H 0.96695 * 113.99853 * 60.00552 * 16 15 14 41 41 H 1.08006 * 125.56418 * 179.80629 * 21 14 13 42 42 H 0.97002 * 125.67991 * 180.02562 * 22 21 14 43 43 H 1.07997 * 125.83059 * 179.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4840 -0.8783 1.5211 6 7 1.9957 -2.2594 1.5210 7 6 2.6258 -3.3302 0.9720 8 6 1.8453 -4.4199 1.1877 9 7 2.1289 -5.7364 0.7796 10 6 1.2626 -6.7301 1.0600 11 8 0.2349 -6.4888 1.6658 12 6 1.5580 -8.1022 0.6341 13 6 0.7701 -9.2117 0.8559 14 6 1.4276 -10.3040 0.2813 15 6 0.9391 -11.7296 0.2730 16 8 -0.2586 -11.8183 -0.5015 17 14 2.2445 -12.8291 -0.4739 18 1 3.4890 -12.7370 0.3309 19 1 1.7628 -14.2338 -0.4826 20 1 2.5218 -12.3928 -1.8660 21 6 2.5838 -9.8541 -0.2622 22 7 2.6750 -8.5177 -0.0546 23 6 0.7054 -3.9998 1.8888 24 7 0.7964 -2.7098 2.0873 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.5740 1.7565 -0.0005 29 1 2.1207 2.2703 -0.8900 30 1 2.1207 2.2703 0.8900 31 1 2.1207 -1.9058 -1.5212 32 1 2.1206 -0.3643 -2.4112 33 1 3.5740 -0.8778 -1.5214 34 1 2.1207 -0.3644 2.4110 35 1 3.5740 -0.8778 1.5212 36 1 3.5773 -3.3178 0.4610 37 1 2.9474 -5.9285 0.2959 38 1 -0.1774 -9.2328 1.3738 39 1 0.7355 -12.0499 1.2948 40 1 -0.1515 -11.5481 -1.4237 41 1 3.3137 -10.4611 -0.7773 42 1 3.4056 -7.9488 -0.3436 43 1 -0.1084 -4.6330 2.2098 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_10543058.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:43:04 Heat of formation + Delta-G solvation = 21.008889 kcal Electronic energy + Delta-G solvation = -24217.079943 eV Core-core repulsion = 20616.625550 eV Total energy + Delta-G solvation = -3600.454393 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.137 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.63948 -42.13659 -40.12003 -37.60796 -36.04330 -33.75894 -32.57982 -31.14402 -30.13852 -29.51617 -28.38649 -28.34570 -27.21793 -26.29737 -24.46485 -22.58965 -21.94653 -21.16038 -20.54801 -19.79141 -18.45880 -17.54494 -17.05709 -16.73809 -16.63640 -16.22901 -15.82149 -15.77305 -15.23711 -14.94614 -14.72006 -14.59971 -14.20640 -14.16372 -14.06075 -13.99062 -13.86823 -13.83539 -13.48198 -13.42467 -13.21825 -13.15255 -13.03256 -12.31840 -12.24665 -12.02245 -11.79213 -11.69675 -11.41306 -11.26427 -10.85740 -10.81506 -10.28640 -10.06309 -9.94090 -9.39295 -8.63791 0.24608 0.81898 1.29853 1.33511 1.46840 1.58124 1.63384 1.65800 1.75936 1.86471 1.91072 2.05600 2.07426 2.22665 2.39265 2.56889 3.67395 3.73612 3.78960 3.95894 3.99535 4.12354 4.24412 4.36372 4.55677 4.67016 4.68999 4.71369 4.74002 4.80629 4.82108 4.83141 4.86494 4.87842 4.92100 4.96567 5.07824 5.50564 5.58806 5.59472 5.64865 5.70437 5.75158 6.04702 6.31852 6.49343 6.66462 6.88057 7.04622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.477 4.477 2 Si 1.096 2.904 3 C -0.455 4.455 4 C -0.458 4.458 5 C -0.190 4.190 6 N -0.339 5.339 7 C 0.036 3.964 8 C -0.026 4.026 9 N -0.625 5.625 10 C 0.586 3.414 11 O -0.559 6.559 12 C -0.064 4.064 13 C -0.096 4.096 14 C -0.225 4.225 15 C -0.058 4.058 16 O -0.563 6.563 17 Si 0.995 3.005 18 H -0.250 1.250 19 H -0.285 1.285 20 H -0.238 1.238 21 C 0.050 3.950 22 N -0.516 5.516 23 C 0.022 3.978 24 N -0.317 5.317 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.045 0.955 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.134 0.866 36 H 0.223 0.777 37 H 0.423 0.577 38 H 0.130 0.870 39 H 0.107 0.893 40 H 0.387 0.613 41 H 0.206 0.794 42 H 0.437 0.563 43 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.302 1.922 -6.095 12.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.581 4.581 2 Si 1.285 2.715 3 C -0.564 4.564 4 C -0.566 4.566 5 C -0.354 4.354 6 N -0.121 5.121 7 C -0.114 4.114 8 C -0.130 4.130 9 N -0.271 5.271 10 C 0.376 3.624 11 O -0.437 6.437 12 C -0.177 4.177 13 C -0.123 4.123 14 C -0.232 4.232 15 C -0.168 4.168 16 O -0.370 6.370 17 Si 0.817 3.183 18 H -0.173 1.173 19 H -0.210 1.210 20 H -0.161 1.161 21 C -0.088 4.088 22 N -0.113 5.113 23 C -0.163 4.163 24 N -0.142 5.142 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.064 0.936 28 H 0.104 0.896 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.108 0.892 34 H 0.121 0.879 35 H 0.152 0.848 36 H 0.240 0.760 37 H 0.261 0.739 38 H 0.148 0.852 39 H 0.125 0.875 40 H 0.236 0.764 41 H 0.222 0.778 42 H 0.279 0.721 43 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 10.568 2.650 -4.938 11.962 hybrid contribution 0.099 -0.226 -0.439 0.503 sum 10.667 2.424 -5.377 12.189 Atomic orbital electron populations 1.26534 1.24576 1.02998 1.03953 0.78239 0.63873 0.65863 0.63505 1.26141 1.07343 1.17875 1.05005 1.26211 1.07482 1.07632 1.15232 1.27415 1.06717 0.81688 1.19559 1.48303 1.14586 1.07741 1.41471 1.22548 1.00765 0.85041 1.03010 1.17743 0.98658 0.85715 1.10882 1.42362 1.23922 1.03984 1.56821 1.17235 0.82902 0.83377 0.78873 1.90754 1.27515 1.82952 1.42514 1.19907 0.93629 0.93022 1.11177 1.21246 0.99441 0.90887 1.00707 1.20003 0.97914 0.96772 1.08484 1.24569 0.95424 0.95985 1.00805 1.86482 1.33937 1.89699 1.26863 0.85116 0.75969 0.76853 0.80367 1.17317 1.21025 1.16124 1.22328 0.99668 0.83935 1.02884 1.41835 1.17913 1.08622 1.42945 1.24304 0.99801 0.92064 1.00138 1.77400 1.03303 1.12289 1.21168 0.91938 0.91277 0.93584 0.89565 0.90743 0.90977 0.92097 0.90993 0.89159 0.87910 0.84796 0.76014 0.73906 0.85209 0.87531 0.76423 0.77781 0.72113 0.80156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 -0.67 8.65 113.37 0.98 0.32 16 2 Si 1.10 -8.08 12.79 68.60 0.88 -7.20 16 3 C -0.45 3.55 8.65 113.37 0.98 4.53 16 4 C -0.46 3.23 8.65 113.37 0.98 4.21 16 5 C -0.19 1.06 5.59 127.77 0.71 1.78 16 6 N -0.34 -0.59 3.01 -182.91 -0.55 -1.14 16 7 C 0.04 -0.07 11.44 83.50 0.96 0.88 16 8 C -0.03 -0.11 6.90 37.63 0.26 0.15 16 9 N -0.63 0.18 5.47 -307.60 -1.68 -1.51 16 10 C 0.59 3.83 7.76 86.44 0.67 4.50 16 11 O -0.56 -8.71 14.03 -4.41 -0.06 -8.77 16 12 C -0.06 -0.16 7.06 40.35 0.28 0.13 16 13 C -0.10 -0.55 10.59 22.57 0.24 -0.31 16 14 C -0.23 -0.05 5.43 -20.12 -0.11 -0.16 16 15 C -0.06 0.03 3.02 71.24 0.22 0.24 16 16 O -0.56 -1.44 12.88 -148.98 -1.92 -3.36 16 17 Si 0.99 -4.21 25.89 68.60 1.78 -2.44 16 18 H -0.25 1.14 7.11 99.48 0.71 1.85 16 19 H -0.28 -0.34 7.11 99.48 0.71 0.37 16 20 H -0.24 1.59 7.11 99.48 0.71 2.30 16 21 C 0.05 -0.29 10.45 83.47 0.87 0.58 16 22 N -0.52 3.43 5.99 -183.61 -1.10 2.33 16 23 C 0.02 0.25 10.84 85.33 0.92 1.18 16 24 N -0.32 -3.39 12.56 -56.77 -0.71 -4.11 16 25 H 0.06 0.16 7.96 -2.39 -0.02 0.14 16 26 H 0.07 0.04 7.96 -2.39 -0.02 0.02 16 27 H 0.04 0.30 7.96 -2.39 -0.02 0.28 16 28 H 0.09 -0.87 7.96 -2.39 -0.02 -0.89 16 29 H 0.07 -0.50 7.96 -2.39 -0.02 -0.52 16 30 H 0.07 -0.50 7.96 -2.39 -0.02 -0.52 16 31 H 0.06 -0.27 7.96 -2.39 -0.02 -0.29 16 32 H 0.07 -0.42 7.96 -2.38 -0.02 -0.44 16 33 H 0.09 -0.96 7.96 -2.39 -0.02 -0.98 16 34 H 0.10 -0.45 7.96 -2.39 -0.02 -0.47 16 35 H 0.13 -1.65 7.96 -2.39 -0.02 -1.67 16 36 H 0.22 -2.80 8.06 -2.91 -0.02 -2.82 16 37 H 0.42 -4.14 7.95 -92.71 -0.74 -4.88 16 38 H 0.13 1.24 8.06 -2.91 -0.02 1.21 16 39 H 0.11 0.02 7.96 -2.39 -0.02 0.00 16 40 H 0.39 -1.81 8.70 -74.06 -0.64 -2.46 16 41 H 0.21 -2.63 6.21 -2.91 -0.02 -2.64 16 42 H 0.44 -6.52 8.19 -92.71 -0.76 -7.28 16 43 H 0.18 2.84 5.91 -2.91 -0.02 2.82 16 Total: 0.00 -29.28 367.60 4.26 -25.02 By element: Atomic # 1 Polarization: -16.53 SS G_CDS: -0.33 Total: -16.86 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: 7.97 Total: 18.03 kcal Atomic # 7 Polarization: -0.38 SS G_CDS: -4.05 Total: -4.42 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: -1.98 Total: -12.13 kcal Atomic # 14 Polarization: -12.29 SS G_CDS: 2.65 Total: -9.64 kcal Total: -29.28 4.26 -25.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_10543058.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.029 kcal (2) G-P(sol) polarization free energy of solvation -29.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds