Wall clock time and date at job start Sun Mar 7 2021 09:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35558 * 125.67463 * 2 1 4 4 C 1.35449 * 108.86784 * 179.86867 * 3 2 1 5 5 C 1.50703 * 126.06838 * 180.12083 * 4 3 2 6 6 O 1.42901 * 109.46959 * 300.30403 * 5 4 3 7 7 Si 1.86294 * 109.46943 * 180.30408 * 5 4 3 8 8 H 1.48499 * 109.47442 * 60.00226 * 7 5 4 9 9 H 1.48505 * 109.46964 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47094 * 299.99783 * 7 5 4 11 11 C 1.39841 * 107.86217 * 0.39801 * 4 3 2 12 12 C 1.37637 * 125.67927 * 180.31642 * 2 1 3 13 13 C 1.46670 * 126.23647 * 359.95444 * 12 2 1 14 14 O 1.21724 * 119.99404 * 5.02607 * 13 12 2 15 15 N 1.34766 * 120.00345 * 185.02644 * 13 12 2 16 16 C 1.40719 * 120.00106 * 185.19361 * 15 13 12 17 17 C 1.35767 * 126.08365 * 180.02562 * 16 15 13 18 18 N 1.35833 * 107.55984 * 179.97438 * 17 16 15 19 19 C 1.46507 * 126.05491 * 179.97438 * 18 17 16 20 20 Si 1.86305 * 109.46733 * 90.00235 * 19 18 17 21 21 C 1.86302 * 109.47100 * 60.00287 * 20 19 18 22 22 C 1.86300 * 109.46892 * 180.02562 * 20 19 18 23 23 C 1.86304 * 109.47196 * 300.00124 * 20 19 18 24 24 N 1.40069 * 107.89082 * 359.97438 * 18 17 16 25 25 C 1.30829 * 108.37366 * 359.73915 * 24 18 17 26 26 H 1.09000 * 109.46957 * 264.55548 * 1 2 3 27 27 H 1.09002 * 109.47399 * 144.55896 * 1 2 3 28 28 H 1.08994 * 109.47553 * 24.55299 * 1 2 3 29 29 H 1.07999 * 125.56989 * 0.03256 * 3 2 1 30 30 H 1.09003 * 109.46953 * 60.30218 * 5 4 3 31 31 H 0.96703 * 114.00129 * 299.99769 * 6 5 4 32 32 H 1.08000 * 126.45542 * 179.73278 * 11 4 3 33 33 H 0.97000 * 120.00472 * 5.19489 * 15 13 12 34 34 H 1.08003 * 126.21749 * 359.93870 * 17 16 15 35 35 H 1.08992 * 109.47390 * 210.00254 * 19 18 17 36 36 H 1.08997 * 109.46864 * 330.00751 * 19 18 17 37 37 H 1.09004 * 109.47136 * 59.99393 * 21 20 19 38 38 H 1.08998 * 109.47388 * 179.97438 * 21 20 19 39 39 H 1.09007 * 109.46893 * 299.99777 * 21 20 19 40 40 H 1.08997 * 109.47479 * 60.00301 * 22 20 19 41 41 H 1.08998 * 109.46784 * 180.02562 * 22 20 19 42 42 H 1.08999 * 109.46790 * 299.99774 * 22 20 19 43 43 H 1.08998 * 109.47090 * 60.00118 * 23 20 19 44 44 H 1.09002 * 109.46614 * 180.02562 * 23 20 19 45 45 H 1.09002 * 109.46864 * 299.99972 * 23 20 19 46 46 H 1.08001 * 125.83016 * 180.27625 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1012 0.0000 4 6 3.5522 0.7095 0.0029 5 6 4.7537 1.6191 0.0065 6 8 4.7261 2.4494 -1.1562 7 14 6.3089 0.5935 0.0004 8 1 6.3359 -0.2574 -1.2164 9 1 7.4930 1.4898 0.0033 10 1 6.3376 -0.2694 1.2087 11 6 3.5779 -0.6886 -0.0044 12 6 2.2677 -1.1180 -0.0062 13 6 1.8125 -2.5122 -0.0129 14 8 0.6252 -2.7642 -0.1058 15 7 2.7085 -3.5142 0.0837 16 6 2.2844 -4.8510 -0.0325 17 6 3.0767 -5.9508 0.0451 18 7 2.2821 -7.0405 -0.1171 19 6 2.7220 -8.4379 -0.1049 20 14 2.6463 -9.0974 1.6359 21 6 0.8956 -8.9919 2.2643 22 6 3.2063 -10.8742 1.6517 23 6 3.7618 -8.0855 2.7325 24 7 0.9678 -6.5915 -0.2982 25 6 0.9670 -5.2844 -0.2419 26 1 -0.3633 -0.0975 1.0230 27 1 -0.3634 -0.8373 -0.5959 28 1 -0.3634 0.9347 -0.4270 29 1 1.9083 2.1238 0.0005 30 1 4.7339 2.2437 0.8996 31 1 4.7415 1.9596 -1.9898 32 1 4.4583 -1.3142 -0.0084 33 1 3.6457 -3.3141 0.2333 34 1 4.1446 -5.9579 0.2059 35 1 2.0694 -9.0299 -0.7464 36 1 3.7463 -8.4996 -0.4725 37 1 0.2429 -9.5839 1.6227 38 1 0.8511 -9.3782 3.2826 39 1 0.5683 -7.9522 2.2551 40 1 4.2306 -10.9356 1.2842 41 1 3.1616 -11.2601 2.6700 42 1 2.5539 -11.4664 1.0100 43 1 3.4345 -7.0459 2.7233 44 1 3.7177 -8.4717 3.7508 45 1 4.7861 -8.1473 2.3648 46 1 0.1004 -4.6478 -0.3424 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608520_10803934.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:43:15 Heat of formation + Delta-G solvation = 25.570481 kcal Electronic energy + Delta-G solvation = -26540.618018 eV Core-core repulsion = 22784.823811 eV Total energy + Delta-G solvation = -3755.794207 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.65068 -42.09156 -39.96206 -37.70763 -35.94813 -34.04532 -33.60829 -31.28062 -29.96076 -29.63602 -28.58780 -28.50648 -28.44012 -26.99061 -25.70234 -24.13772 -22.45779 -21.88286 -20.86068 -20.43515 -18.97305 -18.24261 -17.41138 -16.95496 -16.87765 -16.56960 -16.37542 -15.83161 -15.72817 -15.32980 -15.20591 -14.92842 -14.67076 -14.37862 -14.36434 -14.31086 -14.08799 -13.93885 -13.80208 -13.71277 -13.54757 -13.41615 -13.27391 -13.23752 -13.17273 -13.15118 -12.28807 -12.17362 -12.07128 -11.77528 -11.64992 -11.35185 -11.04177 -10.94188 -10.89990 -10.38374 -10.01034 -9.75198 -9.30609 -8.53904 0.31124 0.86121 1.22923 1.24990 1.45352 1.49426 1.52498 1.59870 1.64350 1.68261 1.88382 1.91652 1.99582 2.35403 2.41136 2.49520 3.55181 3.59051 3.70584 3.83199 3.88917 4.01046 4.14708 4.26819 4.29348 4.31457 4.48227 4.56149 4.58062 4.61130 4.62887 4.64235 4.65046 4.70273 4.71546 4.76281 4.76489 4.80099 5.07657 5.17508 5.32668 5.40059 5.56850 5.63295 5.89040 5.92738 6.03291 6.12730 6.39099 6.65580 6.82011 7.13777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.406 5.406 3 C 0.056 3.944 4 C -0.211 4.211 5 C -0.046 4.046 6 O -0.544 6.544 7 Si 0.952 3.048 8 H -0.253 1.253 9 H -0.257 1.257 10 H -0.252 1.252 11 C -0.142 4.142 12 C -0.045 4.045 13 C 0.593 3.407 14 O -0.535 6.535 15 N -0.631 5.631 16 C -0.002 4.002 17 C 0.016 3.984 18 N -0.343 5.343 19 C -0.169 4.169 20 Si 1.019 2.981 21 C -0.446 4.446 22 C -0.450 4.450 23 C -0.450 4.450 24 N -0.282 5.282 25 C 0.048 3.952 26 H 0.079 0.921 27 H 0.103 0.897 28 H 0.087 0.913 29 H 0.175 0.825 30 H 0.113 0.887 31 H 0.376 0.624 32 H 0.143 0.857 33 H 0.411 0.589 34 H 0.177 0.823 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.631 -0.992 1.018 3.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.077 5.077 3 C -0.081 4.081 4 C -0.217 4.217 5 C -0.157 4.157 6 O -0.349 6.349 7 Si 0.775 3.225 8 H -0.176 1.176 9 H -0.180 1.180 10 H -0.175 1.175 11 C -0.168 4.168 12 C -0.158 4.158 13 C 0.382 3.618 14 O -0.413 6.413 15 N -0.276 5.276 16 C -0.106 4.106 17 C -0.132 4.132 18 N -0.126 5.126 19 C -0.335 4.335 20 Si 1.213 2.787 21 C -0.554 4.554 22 C -0.558 4.558 23 C -0.558 4.558 24 N -0.104 5.104 25 C -0.138 4.138 26 H 0.098 0.902 27 H 0.122 0.878 28 H 0.106 0.894 29 H 0.192 0.808 30 H 0.131 0.869 31 H 0.223 0.777 32 H 0.161 0.839 33 H 0.247 0.753 34 H 0.194 0.806 35 H 0.123 0.877 36 H 0.117 0.883 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.093 0.907 45 H 0.089 0.911 46 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 2.454 -2.373 1.175 3.610 hybrid contribution 0.623 0.742 -0.298 1.013 sum 3.076 -1.631 0.877 3.591 Atomic orbital electron populations 1.22352 0.75433 1.05298 1.04584 1.43913 1.07132 1.04781 1.51905 1.21931 0.89736 0.91639 1.04798 1.19762 0.94811 0.93611 1.13539 1.24279 1.02404 0.97648 0.91396 1.86487 1.97147 1.35727 1.15551 0.85676 0.76607 0.78680 0.81523 1.17641 1.18045 1.17539 1.21196 0.94636 0.94849 1.06141 1.19669 0.90076 0.87262 1.18842 1.16849 0.85231 0.83253 0.76450 1.90699 1.16123 1.84208 1.50272 1.42300 1.11379 1.02604 1.71273 1.17585 0.93904 0.83493 1.15666 1.21871 0.97636 0.85881 1.07840 1.47981 1.04937 1.05046 1.54657 1.26960 1.03516 0.81061 1.21913 0.79388 0.68304 0.66914 0.64099 1.26069 1.18261 1.05056 1.06044 1.26095 1.06067 1.18520 1.05119 1.26129 1.09908 1.09421 1.10329 1.77458 0.97643 1.12074 1.23262 1.24449 0.97533 0.91474 1.00371 0.90198 0.87825 0.89445 0.80751 0.86928 0.77745 0.83938 0.75283 0.80610 0.87674 0.88264 0.91035 0.91225 0.90989 0.90964 0.90570 0.90863 0.91094 0.90739 0.91104 0.77936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.05 10.50 59.85 0.63 0.58 16 2 N -0.41 -0.34 3.16 -120.24 -0.38 -0.72 16 3 C 0.06 0.00 11.27 -16.90 -0.19 -0.19 16 4 C -0.21 0.00 5.41 -105.02 -0.57 -0.57 16 5 C -0.05 0.04 3.00 36.01 0.11 0.15 16 6 O -0.54 0.03 12.87 -35.23 -0.45 -0.42 16 7 Si 0.95 -1.05 25.92 -169.99 -4.41 -5.46 16 8 H -0.25 0.23 7.11 56.52 0.40 0.63 16 9 H -0.26 -0.15 7.11 56.52 0.40 0.25 16 10 H -0.25 0.20 7.11 56.52 0.40 0.60 16 11 C -0.14 -0.01 8.83 -39.11 -0.35 -0.36 16 12 C -0.05 -0.07 6.88 -81.99 -0.56 -0.63 16 13 C 0.59 1.49 7.74 -12.86 -0.10 1.39 16 14 O -0.53 -2.52 11.93 5.17 0.06 -2.45 16 15 N -0.63 -0.39 5.45 -11.22 -0.06 -0.45 16 16 C 0.00 0.00 6.90 -83.90 -0.58 -0.58 16 17 C 0.02 0.00 11.44 -16.67 -0.19 -0.19 16 18 N -0.34 -0.40 3.01 -9.16 -0.03 -0.42 16 19 C -0.17 0.32 5.59 59.85 0.33 0.65 16 20 Si 1.02 -3.08 12.79 -169.99 -2.17 -5.25 16 21 C -0.45 0.08 8.65 101.05 0.87 0.95 16 22 C -0.45 1.29 8.65 101.05 0.87 2.17 16 23 C -0.45 1.01 8.65 101.05 0.87 1.88 16 24 N -0.28 -1.17 12.56 30.71 0.39 -0.78 16 25 C 0.05 0.20 10.84 -17.22 -0.19 0.01 16 26 H 0.08 -0.09 8.14 -51.93 -0.42 -0.51 16 27 H 0.10 0.06 6.52 -51.93 -0.34 -0.27 16 28 H 0.09 -0.26 8.12 -51.93 -0.42 -0.68 16 29 H 0.18 -0.35 8.06 -52.49 -0.42 -0.78 16 30 H 0.11 -0.18 7.96 -51.93 -0.41 -0.59 16 31 H 0.38 -1.11 8.70 45.56 0.40 -0.71 16 32 H 0.14 -0.30 5.81 -52.49 -0.30 -0.61 16 33 H 0.41 -0.99 7.77 -40.82 -0.32 -1.30 16 34 H 0.18 -0.63 8.06 -52.48 -0.42 -1.05 16 35 H 0.10 -0.19 7.96 -51.93 -0.41 -0.60 16 36 H 0.10 -0.41 7.96 -51.93 -0.41 -0.82 16 37 H 0.07 0.00 7.96 -51.93 -0.41 -0.41 16 38 H 0.07 -0.04 7.96 -51.93 -0.41 -0.45 16 39 H 0.07 0.13 7.96 -51.93 -0.41 -0.29 16 40 H 0.07 -0.24 7.96 -51.93 -0.41 -0.65 16 41 H 0.08 -0.19 7.96 -51.93 -0.41 -0.61 16 42 H 0.07 -0.20 7.96 -51.93 -0.41 -0.62 16 43 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 44 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 45 H 0.07 -0.22 7.96 -51.93 -0.41 -0.64 16 46 H 0.20 0.96 5.93 -52.49 -0.31 0.65 16 LS Contribution 386.04 15.07 5.82 5.82 Total: 0.00 -8.80 386.04 -6.59 -15.39 By element: Atomic # 1 Polarization: -4.19 SS G_CDS: -6.32 Total: -10.51 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: 0.97 Total: 5.26 kcal Atomic # 7 Polarization: -2.29 SS G_CDS: -0.08 Total: -2.37 kcal Atomic # 8 Polarization: -2.48 SS G_CDS: -0.39 Total: -2.87 kcal Atomic # 14 Polarization: -4.13 SS G_CDS: -6.58 Total: -10.71 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -8.80 -6.59 -15.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_10803934.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.959 kcal (2) G-P(sol) polarization free energy of solvation -8.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds