Wall clock time and date at job start Sun Mar 7 2021 09:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35558 * 125.67463 * 2 1 4 4 C 1.35449 * 108.86784 * 179.86867 * 3 2 1 5 5 C 1.50703 * 126.06838 * 180.12083 * 4 3 2 6 6 O 1.42901 * 109.46959 * 300.30403 * 5 4 3 7 7 Si 1.86294 * 109.46943 * 180.30408 * 5 4 3 8 8 H 1.48499 * 109.47442 * 60.00226 * 7 5 4 9 9 H 1.48505 * 109.46964 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47094 * 299.99783 * 7 5 4 11 11 C 1.39841 * 107.86217 * 0.39801 * 4 3 2 12 12 C 1.37637 * 125.67927 * 180.31642 * 2 1 3 13 13 C 1.46670 * 126.23647 * 359.95444 * 12 2 1 14 14 O 1.21724 * 119.99404 * 5.02607 * 13 12 2 15 15 N 1.34766 * 120.00345 * 185.02644 * 13 12 2 16 16 C 1.40719 * 120.00106 * 185.19361 * 15 13 12 17 17 C 1.35767 * 126.08365 * 180.02562 * 16 15 13 18 18 N 1.35833 * 107.55984 * 179.97438 * 17 16 15 19 19 C 1.46507 * 126.05491 * 179.97438 * 18 17 16 20 20 Si 1.86305 * 109.46733 * 90.00235 * 19 18 17 21 21 C 1.86302 * 109.47100 * 60.00287 * 20 19 18 22 22 C 1.86300 * 109.46892 * 180.02562 * 20 19 18 23 23 C 1.86304 * 109.47196 * 300.00124 * 20 19 18 24 24 N 1.40069 * 107.89082 * 359.97438 * 18 17 16 25 25 C 1.30829 * 108.37366 * 359.73915 * 24 18 17 26 26 H 1.09000 * 109.46957 * 264.55548 * 1 2 3 27 27 H 1.09002 * 109.47399 * 144.55896 * 1 2 3 28 28 H 1.08994 * 109.47553 * 24.55299 * 1 2 3 29 29 H 1.07999 * 125.56989 * 0.03256 * 3 2 1 30 30 H 1.09003 * 109.46953 * 60.30218 * 5 4 3 31 31 H 0.96703 * 114.00129 * 299.99769 * 6 5 4 32 32 H 1.08000 * 126.45542 * 179.73278 * 11 4 3 33 33 H 0.97000 * 120.00472 * 5.19489 * 15 13 12 34 34 H 1.08003 * 126.21749 * 359.93870 * 17 16 15 35 35 H 1.08992 * 109.47390 * 210.00254 * 19 18 17 36 36 H 1.08997 * 109.46864 * 330.00751 * 19 18 17 37 37 H 1.09004 * 109.47136 * 59.99393 * 21 20 19 38 38 H 1.08998 * 109.47388 * 179.97438 * 21 20 19 39 39 H 1.09007 * 109.46893 * 299.99777 * 21 20 19 40 40 H 1.08997 * 109.47479 * 60.00301 * 22 20 19 41 41 H 1.08998 * 109.46784 * 180.02562 * 22 20 19 42 42 H 1.08999 * 109.46790 * 299.99774 * 22 20 19 43 43 H 1.08998 * 109.47090 * 60.00118 * 23 20 19 44 44 H 1.09002 * 109.46614 * 180.02562 * 23 20 19 45 45 H 1.09002 * 109.46864 * 299.99972 * 23 20 19 46 46 H 1.08001 * 125.83016 * 180.27625 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1012 0.0000 4 6 3.5522 0.7095 0.0029 5 6 4.7537 1.6191 0.0065 6 8 4.7261 2.4494 -1.1562 7 14 6.3089 0.5935 0.0004 8 1 6.3359 -0.2574 -1.2164 9 1 7.4930 1.4898 0.0033 10 1 6.3376 -0.2694 1.2087 11 6 3.5779 -0.6886 -0.0044 12 6 2.2677 -1.1180 -0.0062 13 6 1.8125 -2.5122 -0.0129 14 8 0.6252 -2.7642 -0.1058 15 7 2.7085 -3.5142 0.0837 16 6 2.2844 -4.8510 -0.0325 17 6 3.0767 -5.9508 0.0451 18 7 2.2821 -7.0405 -0.1171 19 6 2.7220 -8.4379 -0.1049 20 14 2.6463 -9.0974 1.6359 21 6 0.8956 -8.9919 2.2643 22 6 3.2063 -10.8742 1.6517 23 6 3.7618 -8.0855 2.7325 24 7 0.9678 -6.5915 -0.2982 25 6 0.9670 -5.2844 -0.2419 26 1 -0.3633 -0.0975 1.0230 27 1 -0.3634 -0.8373 -0.5959 28 1 -0.3634 0.9347 -0.4270 29 1 1.9083 2.1238 0.0005 30 1 4.7339 2.2437 0.8996 31 1 4.7415 1.9596 -1.9898 32 1 4.4583 -1.3142 -0.0084 33 1 3.6457 -3.3141 0.2333 34 1 4.1446 -5.9579 0.2059 35 1 2.0694 -9.0299 -0.7464 36 1 3.7463 -8.4996 -0.4725 37 1 0.2429 -9.5839 1.6227 38 1 0.8511 -9.3782 3.2826 39 1 0.5683 -7.9522 2.2551 40 1 4.2306 -10.9356 1.2842 41 1 3.1616 -11.2601 2.6700 42 1 2.5539 -11.4664 1.0100 43 1 3.4345 -7.0459 2.7233 44 1 3.7177 -8.4717 3.7508 45 1 4.7861 -8.1473 2.3648 46 1 0.1004 -4.6478 -0.3424 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_10803934.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:43:14 Heat of formation + Delta-G solvation = 28.533025 kcal Electronic energy + Delta-G solvation = -26540.489552 eV Core-core repulsion = 22784.823811 eV Total energy + Delta-G solvation = -3755.665741 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.67554 -42.15948 -40.07563 -37.64446 -36.05787 -34.02712 -33.65179 -31.33585 -29.95012 -29.49039 -28.46939 -28.38314 -28.32658 -26.97218 -25.65777 -24.20137 -22.52796 -21.94300 -20.86302 -20.48086 -18.98211 -18.27948 -17.36428 -17.02105 -16.91734 -16.55828 -16.39414 -15.79160 -15.69127 -15.35423 -15.26885 -14.98578 -14.65238 -14.33415 -14.19757 -14.15650 -14.01735 -13.83634 -13.82094 -13.65258 -13.42636 -13.21772 -13.18095 -13.15782 -13.11088 -13.02824 -12.23173 -12.20381 -12.00822 -11.78259 -11.71910 -11.39151 -11.05128 -10.85384 -10.80955 -10.30722 -10.04415 -9.73614 -9.32076 -8.60372 0.26733 0.83443 1.28479 1.33289 1.50451 1.59405 1.63119 1.66919 1.71673 1.76642 1.87186 2.05100 2.09971 2.34261 2.39561 2.57207 3.57837 3.70033 3.75961 3.92580 3.97342 4.08843 4.22873 4.27014 4.35846 4.37399 4.56483 4.67724 4.69042 4.70661 4.71627 4.74176 4.75138 4.81995 4.82493 4.83391 4.86764 4.88199 5.07832 5.11907 5.50755 5.59956 5.64346 5.65600 5.76629 5.89992 6.05857 6.17088 6.38954 6.68104 6.85950 7.07689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.414 5.414 3 C 0.056 3.944 4 C -0.219 4.219 5 C -0.044 4.044 6 O -0.559 6.559 7 Si 0.984 3.016 8 H -0.253 1.253 9 H -0.282 1.282 10 H -0.252 1.252 11 C -0.135 4.135 12 C -0.070 4.070 13 C 0.585 3.415 14 O -0.567 6.567 15 N -0.619 5.619 16 C -0.022 4.022 17 C 0.034 3.966 18 N -0.339 5.339 19 C -0.189 4.189 20 Si 1.094 2.906 21 C -0.475 4.475 22 C -0.454 4.454 23 C -0.459 4.459 24 N -0.317 5.317 25 C 0.025 3.975 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.111 0.889 29 H 0.193 0.807 30 H 0.119 0.881 31 H 0.387 0.613 32 H 0.163 0.837 33 H 0.426 0.574 34 H 0.221 0.779 35 H 0.103 0.897 36 H 0.133 0.867 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.045 0.955 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.059 0.941 44 H 0.071 0.929 45 H 0.088 0.912 46 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.199 -1.366 1.005 6.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.086 5.086 3 C -0.081 4.081 4 C -0.225 4.225 5 C -0.156 4.156 6 O -0.365 6.365 7 Si 0.808 3.192 8 H -0.176 1.176 9 H -0.208 1.208 10 H -0.176 1.176 11 C -0.161 4.161 12 C -0.182 4.182 13 C 0.375 3.625 14 O -0.448 6.448 15 N -0.264 5.264 16 C -0.127 4.127 17 C -0.115 4.115 18 N -0.122 5.122 19 C -0.353 4.353 20 Si 1.283 2.717 21 C -0.579 4.579 22 C -0.563 4.563 23 C -0.567 4.567 24 N -0.141 5.141 25 C -0.160 4.160 26 H 0.098 0.902 27 H 0.103 0.897 28 H 0.129 0.871 29 H 0.210 0.790 30 H 0.137 0.863 31 H 0.236 0.764 32 H 0.181 0.819 33 H 0.265 0.735 34 H 0.237 0.763 35 H 0.122 0.878 36 H 0.151 0.849 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.065 0.935 40 H 0.104 0.896 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.078 0.922 44 H 0.090 0.910 45 H 0.107 0.893 46 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 4.996 -2.761 1.164 5.826 hybrid contribution -0.181 0.832 -0.278 0.896 sum 4.815 -1.929 0.886 5.262 Atomic orbital electron populations 1.22370 0.75042 1.05745 1.04435 1.44093 1.07604 1.04924 1.51983 1.22325 0.89842 0.92164 1.03781 1.19925 0.95164 0.93711 1.13686 1.24337 1.02114 0.97628 0.91480 1.86458 1.97132 1.36579 1.16376 0.85221 0.74957 0.77708 0.81275 1.17630 1.20801 1.17615 1.21471 0.94661 0.95227 1.04771 1.19718 0.90888 0.86980 1.20656 1.17128 0.85078 0.84049 0.76203 1.90689 1.17494 1.84706 1.51925 1.42173 1.11878 1.01835 1.70530 1.17733 0.93444 0.84583 1.16927 1.22533 0.99116 0.84607 1.05284 1.48287 1.04112 1.06427 1.53332 1.27402 1.05269 0.79449 1.23181 0.78275 0.64640 0.66465 0.62336 1.26504 1.21905 1.03099 1.06362 1.26134 1.06909 1.18124 1.05149 1.26234 1.11214 1.08780 1.10474 1.77384 0.99786 1.12173 1.24783 1.24296 0.98324 0.91714 1.01701 0.90211 0.89696 0.87080 0.78989 0.86342 0.76449 0.81945 0.73526 0.76263 0.87811 0.84898 0.91839 0.91269 0.93536 0.89609 0.90736 0.90902 0.92156 0.91004 0.89262 0.79862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.01 10.50 127.77 1.34 1.33 16 2 N -0.41 -0.97 3.16 -534.32 -1.69 -2.66 16 3 C 0.06 -0.02 11.27 83.47 0.94 0.92 16 4 C -0.22 0.14 5.41 -20.12 -0.11 0.03 16 5 C -0.04 0.11 3.00 71.24 0.21 0.33 16 6 O -0.56 0.47 12.87 -148.98 -1.92 -1.45 16 7 Si 0.98 -3.03 25.92 68.60 1.78 -1.25 16 8 H -0.25 0.81 7.11 99.48 0.71 1.51 16 9 H -0.28 -0.35 7.11 99.48 0.71 0.36 16 10 H -0.25 0.76 7.11 99.48 0.71 1.47 16 11 C -0.13 0.05 8.83 22.57 0.20 0.24 16 12 C -0.07 -0.26 6.88 40.35 0.28 0.01 16 13 C 0.59 3.93 7.74 86.45 0.67 4.59 16 14 O -0.57 -7.11 11.93 -4.43 -0.05 -7.16 16 15 N -0.62 -1.10 5.45 -307.61 -1.68 -2.77 16 16 C -0.02 -0.11 6.90 37.63 0.26 0.15 16 17 C 0.03 -0.03 11.44 83.50 0.96 0.92 16 18 N -0.34 -0.72 3.01 -182.90 -0.55 -1.27 16 19 C -0.19 0.97 5.59 127.77 0.71 1.69 16 20 Si 1.09 -7.50 12.79 68.60 0.88 -6.63 16 21 C -0.47 -0.66 8.65 113.37 0.98 0.32 16 22 C -0.45 3.37 8.65 113.37 0.98 4.35 16 23 C -0.46 2.77 8.65 113.37 0.98 3.75 16 24 N -0.32 -3.27 12.56 -56.77 -0.71 -3.99 16 25 C 0.02 0.27 10.84 85.33 0.92 1.20 16 26 H 0.08 -0.05 8.14 -2.39 -0.02 -0.07 16 27 H 0.08 0.33 6.52 -2.39 -0.02 0.31 16 28 H 0.11 -0.63 8.12 -2.39 -0.02 -0.65 16 29 H 0.19 -0.95 8.06 -2.91 -0.02 -0.97 16 30 H 0.12 -0.47 7.96 -2.39 -0.02 -0.49 16 31 H 0.39 -2.53 8.70 -74.06 -0.64 -3.18 16 32 H 0.16 -0.91 5.81 -2.91 -0.02 -0.93 16 33 H 0.43 -2.34 7.77 -92.71 -0.72 -3.06 16 34 H 0.22 -2.35 8.06 -2.91 -0.02 -2.38 16 35 H 0.10 -0.44 7.96 -2.39 -0.02 -0.46 16 36 H 0.13 -1.54 7.96 -2.39 -0.02 -1.56 16 37 H 0.06 0.15 7.96 -2.39 -0.02 0.13 16 38 H 0.07 0.04 7.96 -2.39 -0.02 0.02 16 39 H 0.05 0.30 7.96 -2.38 -0.02 0.28 16 40 H 0.08 -0.82 7.96 -2.39 -0.02 -0.84 16 41 H 0.07 -0.48 7.96 -2.39 -0.02 -0.50 16 42 H 0.07 -0.50 7.96 -2.39 -0.02 -0.51 16 43 H 0.06 -0.20 7.96 -2.39 -0.02 -0.22 16 44 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 45 H 0.09 -0.84 7.96 -2.39 -0.02 -0.86 16 46 H 0.18 2.56 5.93 -2.91 -0.02 2.55 16 Total: 0.00 -23.54 386.04 5.78 -17.76 By element: Atomic # 1 Polarization: -10.80 SS G_CDS: 0.39 Total: -10.41 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: 9.33 Total: 19.84 kcal Atomic # 7 Polarization: -6.07 SS G_CDS: -4.63 Total: -10.70 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: -1.97 Total: -8.62 kcal Atomic # 14 Polarization: -10.53 SS G_CDS: 2.66 Total: -7.88 kcal Total: -23.54 5.78 -17.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_10803934.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.294 kcal (2) G-P(sol) polarization free energy of solvation -23.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds