Wall clock time and date at job start Sun Mar 7 2021 09:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37638 * 125.67811 * 2 1 4 4 C 1.46677 * 126.23397 * 0.02562 * 3 2 1 5 5 O 1.21724 * 119.99564 * 4.67664 * 4 3 2 6 6 N 1.34769 * 119.99926 * 184.67755 * 4 3 2 7 7 C 1.40724 * 120.00036 * 174.81291 * 6 4 3 8 8 C 1.35766 * 126.08083 * 179.97438 * 7 6 4 9 9 N 1.35836 * 107.55250 * 179.97438 * 8 7 6 10 10 C 1.46509 * 126.04860 * 179.97438 * 9 8 7 11 11 Si 1.86297 * 109.46898 * 90.00251 * 10 9 8 12 12 C 1.86296 * 109.47387 * 59.99727 * 11 10 9 13 13 C 1.86297 * 109.47120 * 179.97438 * 11 10 9 14 14 C 1.86301 * 109.47199 * 299.99633 * 11 10 9 15 15 N 1.40066 * 107.89573 * 359.97438 * 9 8 7 16 16 C 1.30824 * 108.37250 * 0.02562 * 15 9 8 17 17 C 1.37877 * 107.53360 * 179.75477 * 3 2 1 18 18 C 1.39844 * 107.08601 * 0.24032 * 17 3 2 19 19 C 1.35446 * 107.86575 * 0.02562 * 18 17 3 20 20 C 1.50698 * 125.56442 * 180.02562 * 19 18 17 21 21 O 1.42899 * 109.46936 * 209.97606 * 20 19 18 22 22 Si 1.86296 * 109.47227 * 329.97385 * 20 19 18 23 23 H 1.48497 * 109.47188 * 59.99990 * 22 20 19 24 24 H 1.48498 * 109.47598 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47340 * 300.00248 * 22 20 19 26 26 H 1.09001 * 109.47224 * 94.91232 * 1 2 3 27 27 H 1.09001 * 109.47468 * 214.90992 * 1 2 3 28 28 H 1.09001 * 109.47316 * 334.91374 * 1 2 3 29 29 H 0.96998 * 120.00523 * 354.80732 * 6 4 3 30 30 H 1.07991 * 126.22307 * 359.73849 * 8 7 6 31 31 H 1.08994 * 109.46993 * 209.99854 * 10 9 8 32 32 H 1.08998 * 109.47240 * 330.00304 * 10 9 8 33 33 H 1.09003 * 109.47371 * 60.00138 * 12 11 10 34 34 H 1.09002 * 109.47298 * 179.97438 * 12 11 10 35 35 H 1.09001 * 109.47134 * 300.00011 * 12 11 10 36 36 H 1.09009 * 109.47378 * 59.99635 * 13 11 10 37 37 H 1.09001 * 109.47356 * 179.97438 * 13 11 10 38 38 H 1.08999 * 109.47396 * 300.00293 * 13 11 10 39 39 H 1.09001 * 109.46992 * 60.00191 * 14 11 10 40 40 H 1.09001 * 109.47410 * 180.02562 * 14 11 10 41 41 H 1.09003 * 109.47016 * 300.00534 * 14 11 10 42 42 H 1.08007 * 125.83319 * 180.02562 * 16 15 9 43 43 H 1.08001 * 126.45451 * 180.20739 * 17 3 2 44 44 H 1.08001 * 126.06515 * 179.97438 * 18 17 3 45 45 H 1.08992 * 109.47082 * 89.97792 * 20 19 18 46 46 H 0.96699 * 113.99983 * 59.99924 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2678 1.1180 0.0000 4 6 1.8124 2.5123 0.0005 5 8 0.6247 2.7646 0.0870 6 7 2.7089 3.5140 -0.0947 7 6 2.2672 4.8457 -0.2042 8 6 3.0579 5.9446 -0.3062 9 7 2.2437 7.0286 -0.3914 10 6 2.6752 8.4233 -0.5147 11 14 2.8416 8.8646 -2.3170 12 6 1.1970 8.6460 -3.1644 13 6 3.3895 10.6383 -2.4739 14 6 4.1043 7.7512 -3.1150 15 7 0.9189 6.5769 -0.3404 16 6 0.9316 5.2735 -0.2284 17 6 3.5780 0.6887 0.0056 18 6 3.5522 -0.7095 0.0034 19 6 2.2556 -1.1012 -0.0039 20 6 1.7710 -2.5281 -0.0080 21 8 0.5164 -2.6031 -0.6880 22 14 3.0160 -3.6042 -0.8814 23 1 4.3198 -3.5262 -0.1749 24 1 2.5383 -5.0103 -0.8860 25 1 3.1821 -3.1338 -2.2801 26 1 -0.3634 -0.0880 -1.0239 27 1 -0.3634 -0.8427 0.5881 28 1 -0.3634 0.9307 0.4357 29 1 3.6587 3.3173 -0.0877 30 1 4.1377 5.9553 -0.3140 31 1 1.9365 9.0747 -0.0479 32 1 3.6374 8.5511 -0.0190 33 1 0.4582 9.2975 -2.6976 34 1 1.2943 8.9047 -4.2188 35 1 0.8761 7.6084 -3.0726 36 1 4.3517 10.7667 -1.9780 37 1 3.4873 10.8965 -3.5284 38 1 2.6505 11.2895 -2.0071 39 1 3.7833 6.7136 -3.0232 40 1 4.2020 8.0097 -4.1694 41 1 5.0665 7.8791 -2.6191 42 1 0.0622 4.6358 -0.1660 43 1 4.4583 1.3143 0.0103 44 1 4.4133 -1.3613 0.0062 45 1 1.6491 -2.8733 1.0185 46 1 0.5501 -2.3106 -1.6091 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608520_10803936.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:46:20 Heat of formation + Delta-G solvation = 25.358944 kcal Electronic energy + Delta-G solvation = -26604.210077 eV Core-core repulsion = 22848.406697 eV Total energy + Delta-G solvation = -3755.803380 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.66015 -42.08783 -39.97417 -37.80304 -35.92767 -33.86391 -33.55893 -31.65181 -30.21105 -29.67227 -28.57471 -28.44101 -27.56940 -27.34035 -26.25057 -23.59109 -22.42233 -22.04985 -20.97403 -20.24979 -18.88088 -18.38108 -17.96215 -16.97127 -16.80744 -16.45181 -16.31141 -15.87260 -15.63562 -15.20882 -15.04055 -14.80498 -14.74070 -14.43913 -14.34717 -14.30557 -14.06365 -13.92882 -13.89826 -13.73963 -13.51550 -13.40826 -13.24867 -13.22795 -13.16070 -12.97068 -12.41628 -12.16642 -12.07728 -11.94850 -11.62884 -11.32828 -11.03340 -10.95975 -10.92405 -10.69421 -9.98994 -9.74481 -9.17863 -8.50583 0.31170 0.85747 0.98391 1.28414 1.41290 1.46875 1.50769 1.62147 1.67423 1.70087 1.89036 1.94294 1.99772 2.41407 2.43074 2.55023 3.20181 3.54492 3.64780 3.74110 3.91647 4.00241 4.29623 4.30939 4.38139 4.46455 4.49644 4.50828 4.56908 4.58989 4.62108 4.63861 4.69152 4.76484 4.77272 4.80826 4.83364 4.97648 5.11537 5.22637 5.33467 5.40844 5.57644 5.68428 5.95027 5.97374 6.05657 6.13695 6.33062 6.43922 6.84355 7.17898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.389 5.389 3 C -0.050 4.050 4 C 0.593 3.407 5 O -0.535 6.535 6 N -0.630 5.630 7 C -0.001 4.001 8 C 0.016 3.984 9 N -0.344 5.344 10 C -0.169 4.169 11 Si 1.019 2.981 12 C -0.446 4.446 13 C -0.450 4.450 14 C -0.450 4.450 15 N -0.282 5.282 16 C 0.048 3.952 17 C -0.134 4.134 18 C -0.208 4.208 19 C 0.016 3.984 20 C -0.063 4.063 21 O -0.541 6.541 22 Si 0.979 3.021 23 H -0.247 1.247 24 H -0.252 1.252 25 H -0.250 1.250 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.105 0.895 29 H 0.412 0.588 30 H 0.177 0.823 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.204 0.796 43 H 0.147 0.853 44 H 0.148 0.852 45 H 0.124 0.876 46 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.452 0.150 -1.493 5.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.061 5.061 3 C -0.164 4.164 4 C 0.383 3.617 5 O -0.414 6.414 6 N -0.275 5.275 7 C -0.106 4.106 8 C -0.133 4.133 9 N -0.127 5.127 10 C -0.335 4.335 11 Si 1.214 2.786 12 C -0.554 4.554 13 C -0.558 4.558 14 C -0.558 4.558 15 N -0.105 5.105 16 C -0.139 4.139 17 C -0.160 4.160 18 C -0.232 4.232 19 C -0.103 4.103 20 C -0.173 4.173 21 O -0.346 6.346 22 Si 0.798 3.202 23 H -0.170 1.170 24 H -0.175 1.175 25 H -0.173 1.173 26 H 0.094 0.906 27 H 0.111 0.889 28 H 0.123 0.877 29 H 0.248 0.752 30 H 0.194 0.806 31 H 0.123 0.877 32 H 0.117 0.883 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.220 0.780 43 H 0.165 0.835 44 H 0.166 0.834 45 H 0.142 0.858 46 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 3.897 0.750 -1.314 4.181 hybrid contribution 0.977 -0.280 0.041 1.017 sum 4.874 0.470 -1.274 5.060 Atomic orbital electron populations 1.22441 0.75257 1.06000 1.04119 1.43738 1.07111 1.03860 1.51373 1.19793 0.90513 0.87098 1.18977 1.16861 0.85246 0.83276 0.76329 1.90680 1.16331 1.84140 1.50222 1.42287 1.09962 1.02933 1.72303 1.17585 0.93346 0.83779 1.15879 1.21863 0.97306 0.86072 1.08011 1.47977 1.03715 1.05361 1.55602 1.26957 1.03860 0.80151 1.22483 0.79374 0.68084 0.67303 0.63875 1.26071 1.16687 1.05277 1.07407 1.26100 1.06028 1.18484 1.05203 1.26126 1.11481 1.10376 1.07782 1.77454 0.97283 1.12034 1.23681 1.24450 0.97383 0.91584 1.00450 1.21294 0.94346 0.95231 1.05159 1.20663 0.95147 0.95484 1.11887 1.21148 0.90928 0.89359 1.08823 1.24912 0.94409 0.94254 1.03714 1.86510 1.30088 1.89010 1.29025 0.85298 0.76780 0.78221 0.79869 1.17025 1.17521 1.17336 0.90560 0.88861 0.87693 0.75202 0.80614 0.87696 0.88283 0.91041 0.91238 0.91002 0.90973 0.90583 0.90866 0.91086 0.90757 0.91104 0.77959 0.83546 0.83434 0.85828 0.77457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.05 9.37 59.85 0.56 0.61 16 2 N -0.39 -0.66 3.16 -115.61 -0.37 -1.02 16 3 C -0.05 -0.10 6.89 -81.98 -0.56 -0.66 16 4 C 0.59 1.67 7.74 -12.86 -0.10 1.57 16 5 O -0.54 -2.77 11.73 5.17 0.06 -2.71 16 6 N -0.63 -0.40 5.46 -11.21 -0.06 -0.46 16 7 C 0.00 0.00 6.90 -83.90 -0.58 -0.58 16 8 C 0.02 0.00 11.44 -16.66 -0.19 -0.19 16 9 N -0.34 -0.43 3.01 -9.16 -0.03 -0.46 16 10 C -0.17 0.31 5.59 59.85 0.33 0.64 16 11 Si 1.02 -3.08 12.79 -169.99 -2.17 -5.26 16 12 C -0.45 0.07 8.65 101.05 0.87 0.95 16 13 C -0.45 1.28 8.65 101.05 0.87 2.16 16 14 C -0.45 1.03 8.65 101.05 0.87 1.91 16 15 N -0.28 -1.21 12.56 30.71 0.39 -0.83 16 16 C 0.05 0.21 10.84 -17.22 -0.19 0.02 16 17 C -0.13 -0.02 10.36 -39.11 -0.41 -0.42 16 18 C -0.21 -0.04 9.37 -39.98 -0.37 -0.42 16 19 C 0.02 0.01 6.14 -81.94 -0.50 -0.49 16 20 C -0.06 0.08 2.90 36.00 0.10 0.18 16 21 O -0.54 0.53 10.53 -35.23 -0.37 0.15 16 22 Si 0.98 -1.66 26.55 -169.99 -4.51 -6.17 16 23 H -0.25 0.37 6.79 56.52 0.38 0.75 16 24 H -0.25 0.09 7.11 56.52 0.40 0.50 16 25 H -0.25 0.21 7.11 56.52 0.40 0.61 16 26 H 0.08 -0.03 8.14 -51.93 -0.42 -0.45 16 27 H 0.09 0.01 7.15 -51.93 -0.37 -0.36 16 28 H 0.10 0.23 5.96 -51.93 -0.31 -0.08 16 29 H 0.41 -1.06 7.73 -40.82 -0.32 -1.38 16 30 H 0.18 -0.63 8.06 -52.49 -0.42 -1.05 16 31 H 0.10 -0.18 7.96 -51.93 -0.41 -0.59 16 32 H 0.10 -0.40 7.96 -51.93 -0.41 -0.81 16 33 H 0.07 0.01 7.96 -51.93 -0.41 -0.41 16 34 H 0.07 -0.04 7.96 -51.93 -0.41 -0.45 16 35 H 0.07 0.13 7.96 -51.93 -0.41 -0.29 16 36 H 0.07 -0.24 7.96 -51.92 -0.41 -0.65 16 37 H 0.08 -0.19 7.96 -51.93 -0.41 -0.60 16 38 H 0.07 -0.20 7.96 -51.93 -0.41 -0.61 16 39 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 40 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 41 H 0.07 -0.23 7.96 -51.93 -0.41 -0.64 16 42 H 0.20 1.02 5.93 -52.48 -0.31 0.71 16 43 H 0.15 -0.42 7.45 -52.49 -0.39 -0.81 16 44 H 0.15 -0.22 6.64 -52.49 -0.35 -0.57 16 45 H 0.12 -0.25 7.96 -51.93 -0.41 -0.66 16 46 H 0.38 -1.34 8.70 45.56 0.40 -0.95 16 LS Contribution 381.61 15.07 5.75 5.75 Total: 0.00 -8.73 381.61 -6.87 -15.59 By element: Atomic # 1 Polarization: -3.60 SS G_CDS: -6.27 Total: -9.87 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: 0.72 Total: 5.27 kcal Atomic # 7 Polarization: -2.70 SS G_CDS: -0.07 Total: -2.77 kcal Atomic # 8 Polarization: -2.24 SS G_CDS: -0.31 Total: -2.55 kcal Atomic # 14 Polarization: -4.74 SS G_CDS: -6.69 Total: -11.42 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -8.73 -6.87 -15.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_10803936.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.952 kcal (2) G-P(sol) polarization free energy of solvation -8.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds