Wall clock time and date at job start Sun Mar 7 2021 09:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37638 * 125.67811 * 2 1 4 4 C 1.46677 * 126.23397 * 0.02562 * 3 2 1 5 5 O 1.21724 * 119.99564 * 4.67664 * 4 3 2 6 6 N 1.34769 * 119.99926 * 184.67755 * 4 3 2 7 7 C 1.40724 * 120.00036 * 174.81291 * 6 4 3 8 8 C 1.35766 * 126.08083 * 179.97438 * 7 6 4 9 9 N 1.35836 * 107.55250 * 179.97438 * 8 7 6 10 10 C 1.46509 * 126.04860 * 179.97438 * 9 8 7 11 11 Si 1.86297 * 109.46898 * 90.00251 * 10 9 8 12 12 C 1.86296 * 109.47387 * 59.99727 * 11 10 9 13 13 C 1.86297 * 109.47120 * 179.97438 * 11 10 9 14 14 C 1.86301 * 109.47199 * 299.99633 * 11 10 9 15 15 N 1.40066 * 107.89573 * 359.97438 * 9 8 7 16 16 C 1.30824 * 108.37250 * 0.02562 * 15 9 8 17 17 C 1.37877 * 107.53360 * 179.75477 * 3 2 1 18 18 C 1.39844 * 107.08601 * 0.24032 * 17 3 2 19 19 C 1.35446 * 107.86575 * 0.02562 * 18 17 3 20 20 C 1.50698 * 125.56442 * 180.02562 * 19 18 17 21 21 O 1.42899 * 109.46936 * 209.97606 * 20 19 18 22 22 Si 1.86296 * 109.47227 * 329.97385 * 20 19 18 23 23 H 1.48497 * 109.47188 * 59.99990 * 22 20 19 24 24 H 1.48498 * 109.47598 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47340 * 300.00248 * 22 20 19 26 26 H 1.09001 * 109.47224 * 94.91232 * 1 2 3 27 27 H 1.09001 * 109.47468 * 214.90992 * 1 2 3 28 28 H 1.09001 * 109.47316 * 334.91374 * 1 2 3 29 29 H 0.96998 * 120.00523 * 354.80732 * 6 4 3 30 30 H 1.07991 * 126.22307 * 359.73849 * 8 7 6 31 31 H 1.08994 * 109.46993 * 209.99854 * 10 9 8 32 32 H 1.08998 * 109.47240 * 330.00304 * 10 9 8 33 33 H 1.09003 * 109.47371 * 60.00138 * 12 11 10 34 34 H 1.09002 * 109.47298 * 179.97438 * 12 11 10 35 35 H 1.09001 * 109.47134 * 300.00011 * 12 11 10 36 36 H 1.09009 * 109.47378 * 59.99635 * 13 11 10 37 37 H 1.09001 * 109.47356 * 179.97438 * 13 11 10 38 38 H 1.08999 * 109.47396 * 300.00293 * 13 11 10 39 39 H 1.09001 * 109.46992 * 60.00191 * 14 11 10 40 40 H 1.09001 * 109.47410 * 180.02562 * 14 11 10 41 41 H 1.09003 * 109.47016 * 300.00534 * 14 11 10 42 42 H 1.08007 * 125.83319 * 180.02562 * 16 15 9 43 43 H 1.08001 * 126.45451 * 180.20739 * 17 3 2 44 44 H 1.08001 * 126.06515 * 179.97438 * 18 17 3 45 45 H 1.08992 * 109.47082 * 89.97792 * 20 19 18 46 46 H 0.96699 * 113.99983 * 59.99924 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2678 1.1180 0.0000 4 6 1.8124 2.5123 0.0005 5 8 0.6247 2.7646 0.0870 6 7 2.7089 3.5140 -0.0947 7 6 2.2672 4.8457 -0.2042 8 6 3.0579 5.9446 -0.3062 9 7 2.2437 7.0286 -0.3914 10 6 2.6752 8.4233 -0.5147 11 14 2.8416 8.8646 -2.3170 12 6 1.1970 8.6460 -3.1644 13 6 3.3895 10.6383 -2.4739 14 6 4.1043 7.7512 -3.1150 15 7 0.9189 6.5769 -0.3404 16 6 0.9316 5.2735 -0.2284 17 6 3.5780 0.6887 0.0056 18 6 3.5522 -0.7095 0.0034 19 6 2.2556 -1.1012 -0.0039 20 6 1.7710 -2.5281 -0.0080 21 8 0.5164 -2.6031 -0.6880 22 14 3.0160 -3.6042 -0.8814 23 1 4.3198 -3.5262 -0.1749 24 1 2.5383 -5.0103 -0.8860 25 1 3.1821 -3.1338 -2.2801 26 1 -0.3634 -0.0880 -1.0239 27 1 -0.3634 -0.8427 0.5881 28 1 -0.3634 0.9307 0.4357 29 1 3.6587 3.3173 -0.0877 30 1 4.1377 5.9553 -0.3140 31 1 1.9365 9.0747 -0.0479 32 1 3.6374 8.5511 -0.0190 33 1 0.4582 9.2975 -2.6976 34 1 1.2943 8.9047 -4.2188 35 1 0.8761 7.6084 -3.0726 36 1 4.3517 10.7667 -1.9780 37 1 3.4873 10.8965 -3.5284 38 1 2.6505 11.2895 -2.0071 39 1 3.7833 6.7136 -3.0232 40 1 4.2020 8.0097 -4.1694 41 1 5.0665 7.8791 -2.6191 42 1 0.0622 4.6358 -0.1660 43 1 4.4583 1.3143 0.0103 44 1 4.4133 -1.3613 0.0062 45 1 1.6491 -2.8733 1.0185 46 1 0.5501 -2.3106 -1.6091 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_10803936.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:46:18 Heat of formation + Delta-G solvation = 28.492076 kcal Electronic energy + Delta-G solvation = -26604.074214 eV Core-core repulsion = 22848.406697 eV Total energy + Delta-G solvation = -3755.667517 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.153 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.70012 -42.17351 -40.10286 -37.71744 -36.05189 -33.89634 -33.61637 -31.68312 -30.24751 -29.51173 -28.37418 -28.33382 -27.55862 -27.36034 -26.25128 -23.65997 -22.49268 -22.09404 -21.03080 -20.30637 -18.89552 -18.38782 -17.97657 -16.99713 -16.89366 -16.48867 -16.29032 -15.88048 -15.64729 -15.25503 -15.10683 -14.77375 -14.73491 -14.45815 -14.19010 -14.14544 -14.00383 -13.86977 -13.82345 -13.75444 -13.40908 -13.24915 -13.20725 -13.13827 -13.01750 -12.99564 -12.34105 -12.20030 -11.97740 -11.87526 -11.76783 -11.37874 -11.06973 -10.84437 -10.79850 -10.66504 -10.03184 -9.75822 -9.21223 -8.57626 0.25580 0.83537 1.06759 1.32286 1.50469 1.58802 1.61405 1.67042 1.75305 1.82575 1.88603 2.02111 2.11394 2.38243 2.44281 2.58285 3.34963 3.60796 3.65088 3.78166 3.98489 4.00043 4.27582 4.31603 4.36669 4.53928 4.55363 4.59471 4.68941 4.70469 4.72447 4.75476 4.75985 4.83744 4.84921 4.87598 4.89163 5.04625 5.08419 5.15717 5.51519 5.61243 5.66120 5.69113 5.78428 5.97150 6.07472 6.13061 6.42281 6.54555 6.69434 7.11083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.402 5.402 3 C -0.077 4.077 4 C 0.585 3.415 5 O -0.571 6.571 6 N -0.616 5.616 7 C -0.022 4.022 8 C 0.035 3.965 9 N -0.339 5.339 10 C -0.190 4.190 11 Si 1.095 2.905 12 C -0.475 4.475 13 C -0.455 4.455 14 C -0.459 4.459 15 N -0.318 5.318 16 C 0.023 3.977 17 C -0.123 4.123 18 C -0.219 4.219 19 C 0.013 3.987 20 C -0.066 4.066 21 O -0.553 6.553 22 Si 1.021 2.979 23 H -0.243 1.243 24 H -0.272 1.272 25 H -0.262 1.262 26 H 0.082 0.918 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.428 0.572 30 H 0.222 0.778 31 H 0.102 0.898 32 H 0.133 0.867 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.045 0.955 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.183 0.817 43 H 0.177 0.823 44 H 0.166 0.834 45 H 0.131 0.869 46 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.666 0.557 -1.335 8.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.074 5.074 3 C -0.191 4.191 4 C 0.376 3.624 5 O -0.452 6.452 6 N -0.261 5.261 7 C -0.127 4.127 8 C -0.114 4.114 9 N -0.122 5.122 10 C -0.353 4.353 11 Si 1.284 2.716 12 C -0.579 4.579 13 C -0.564 4.564 14 C -0.566 4.566 15 N -0.142 5.142 16 C -0.162 4.162 17 C -0.149 4.149 18 C -0.242 4.242 19 C -0.105 4.105 20 C -0.175 4.175 21 O -0.359 6.359 22 Si 0.842 3.158 23 H -0.167 1.167 24 H -0.197 1.197 25 H -0.186 1.186 26 H 0.101 0.899 27 H 0.116 0.884 28 H 0.103 0.897 29 H 0.267 0.733 30 H 0.239 0.761 31 H 0.121 0.879 32 H 0.151 0.849 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.108 0.892 42 H 0.200 0.800 43 H 0.194 0.806 44 H 0.184 0.816 45 H 0.149 0.851 46 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 7.101 1.172 -1.166 7.291 hybrid contribution -0.045 -0.367 -0.048 0.373 sum 7.056 0.805 -1.214 7.205 Atomic orbital electron populations 1.22338 0.75467 1.05050 1.04416 1.43888 1.07275 1.04316 1.51966 1.19902 0.91445 0.86713 1.20991 1.17147 0.85083 0.84106 0.76081 1.90672 1.17837 1.84668 1.52016 1.42131 1.10515 1.02057 1.71420 1.17733 0.92788 0.84923 1.17214 1.22535 0.98907 0.84735 1.05252 1.48287 1.02898 1.06762 1.54219 1.27412 1.05305 0.78489 1.24143 0.78248 0.64734 0.66852 0.61719 1.26512 1.19812 1.03328 1.08265 1.26143 1.06760 1.18139 1.05316 1.26221 1.12645 1.09778 1.07978 1.77380 0.99499 1.12133 1.25192 1.24283 0.98215 0.91840 1.01848 1.21715 0.94438 0.95643 1.03121 1.20994 0.95512 0.95885 1.11825 1.21548 0.91231 0.89731 1.08024 1.25094 0.94580 0.93426 1.04402 1.86483 1.30446 1.89026 1.29967 0.84690 0.76157 0.76289 0.78710 1.16677 1.19653 1.18640 0.89918 0.88383 0.89660 0.73274 0.76146 0.87910 0.84903 0.91911 0.91260 0.93540 0.89608 0.90731 0.90958 0.92086 0.90995 0.89234 0.80042 0.80553 0.81613 0.85117 0.76309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.24 9.37 127.77 1.20 1.44 16 2 N -0.40 -1.79 3.16 -519.69 -1.64 -3.43 16 3 C -0.08 -0.36 6.89 40.35 0.28 -0.08 16 4 C 0.59 4.31 7.74 86.45 0.67 4.98 16 5 O -0.57 -7.86 11.73 -4.43 -0.05 -7.91 16 6 N -0.62 -1.03 5.46 -307.60 -1.68 -2.71 16 7 C -0.02 -0.11 6.90 37.63 0.26 0.15 16 8 C 0.04 -0.03 11.44 83.50 0.96 0.92 16 9 N -0.34 -0.78 3.01 -182.91 -0.55 -1.33 16 10 C -0.19 0.95 5.59 127.77 0.71 1.67 16 11 Si 1.10 -7.59 12.79 68.60 0.88 -6.71 16 12 C -0.48 -0.67 8.65 113.37 0.98 0.31 16 13 C -0.45 3.37 8.65 113.37 0.98 4.35 16 14 C -0.46 2.90 8.65 113.37 0.98 3.88 16 15 N -0.32 -3.41 12.56 -56.77 -0.71 -4.12 16 16 C 0.02 0.27 10.84 85.34 0.92 1.19 16 17 C -0.12 0.09 10.36 22.57 0.23 0.32 16 18 C -0.22 0.13 9.37 22.01 0.21 0.33 16 19 C 0.01 0.01 6.14 41.34 0.25 0.27 16 20 C -0.07 0.17 2.90 71.24 0.21 0.37 16 21 O -0.55 0.84 10.53 -148.98 -1.57 -0.72 16 22 Si 1.02 -3.96 26.55 68.60 1.82 -2.14 16 23 H -0.24 1.09 6.79 99.48 0.68 1.77 16 24 H -0.27 0.17 7.11 99.48 0.71 0.88 16 25 H -0.26 0.52 7.11 99.48 0.71 1.23 16 26 H 0.08 0.12 8.14 -2.39 -0.02 0.10 16 27 H 0.10 0.18 7.15 -2.39 -0.02 0.17 16 28 H 0.08 0.66 5.96 -2.39 -0.01 0.65 16 29 H 0.43 -2.67 7.73 -92.71 -0.72 -3.39 16 30 H 0.22 -2.42 8.06 -2.92 -0.02 -2.44 16 31 H 0.10 -0.41 7.96 -2.39 -0.02 -0.43 16 32 H 0.13 -1.53 7.96 -2.39 -0.02 -1.55 16 33 H 0.06 0.16 7.96 -2.39 -0.02 0.14 16 34 H 0.07 0.04 7.96 -2.39 -0.02 0.02 16 35 H 0.05 0.30 7.96 -2.39 -0.02 0.28 16 36 H 0.08 -0.82 7.96 -2.38 -0.02 -0.84 16 37 H 0.07 -0.48 7.96 -2.39 -0.02 -0.50 16 38 H 0.07 -0.48 7.96 -2.39 -0.02 -0.50 16 39 H 0.06 -0.22 7.96 -2.39 -0.02 -0.24 16 40 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 41 H 0.09 -0.87 7.96 -2.39 -0.02 -0.89 16 42 H 0.18 2.70 5.93 -2.91 -0.02 2.68 16 43 H 0.18 -1.42 7.45 -2.91 -0.02 -1.44 16 44 H 0.17 -0.80 6.64 -2.91 -0.02 -0.82 16 45 H 0.13 -0.55 7.96 -2.39 -0.02 -0.57 16 46 H 0.39 -2.54 8.70 -74.06 -0.64 -3.18 16 Total: 0.00 -23.95 381.61 5.70 -18.25 By element: Atomic # 1 Polarization: -9.64 SS G_CDS: 0.37 Total: -9.27 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: 8.84 Total: 20.10 kcal Atomic # 7 Polarization: -7.01 SS G_CDS: -4.59 Total: -11.59 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -1.62 Total: -8.63 kcal Atomic # 14 Polarization: -11.55 SS G_CDS: 2.70 Total: -8.85 kcal Total: -23.95 5.70 -18.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_10803936.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.739 kcal (2) G-P(sol) polarization free energy of solvation -23.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds