Wall clock time and date at job start Sun Mar 7 2021 09:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86298 * 109.47165 * 2 1 4 4 C 1.86299 * 109.47092 * 239.99637 * 2 1 3 5 5 C 1.86303 * 109.47376 * 119.99875 * 2 1 3 6 6 N 1.46500 * 109.47042 * 59.99602 * 5 2 1 7 7 C 1.35846 * 126.05471 * 90.00585 * 6 5 2 8 8 C 1.35756 * 107.55618 * 180.02562 * 7 6 5 9 9 N 1.40759 * 126.07247 * 179.97438 * 8 7 6 10 10 C 1.34773 * 119.99674 * 179.97438 * 9 8 7 11 11 O 1.21750 * 120.00106 * 359.97438 * 10 9 8 12 12 C 1.46571 * 119.99990 * 179.97438 * 10 9 8 13 13 C 1.40851 * 126.57677 * 180.02562 * 12 10 9 14 14 C 1.40086 * 132.87159 * 0.02562 * 13 12 10 15 15 C 1.36453 * 119.25702 * 179.97438 * 14 13 12 16 16 C 1.50696 * 120.29305 * 180.02562 * 15 14 13 17 17 O 1.42903 * 109.47131 * 239.99655 * 16 15 14 18 18 Si 1.86305 * 109.47185 * 120.00195 * 16 15 14 19 19 H 1.48499 * 109.47126 * 179.97438 * 18 16 15 20 20 H 1.48496 * 109.46885 * 299.99843 * 18 16 15 21 21 H 1.48499 * 109.46850 * 59.99646 * 18 16 15 22 22 C 1.40163 * 119.41050 * 0.27833 * 15 14 13 23 23 C 1.35185 * 120.31624 * 359.43705 * 22 15 14 24 24 N 1.36248 * 120.70664 * 0.56682 * 23 22 15 25 25 N 1.40017 * 132.01638 * 179.73878 * 24 23 22 26 26 C 1.30738 * 109.60316 * 179.97438 * 25 24 23 27 27 C 1.40245 * 107.84628 * 0.24039 * 8 7 6 28 28 N 1.30837 * 108.34219 * 359.58873 * 27 8 7 29 29 H 1.09003 * 109.46961 * 300.00348 * 1 2 3 30 30 H 1.08996 * 109.46886 * 60.00425 * 1 2 3 31 31 H 1.09002 * 109.46901 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47054 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46868 * 299.99349 * 3 2 1 34 34 H 1.08989 * 109.47486 * 59.99893 * 3 2 1 35 35 H 1.09002 * 109.47386 * 299.99872 * 4 2 1 36 36 H 1.08996 * 109.47306 * 60.00195 * 4 2 1 37 37 H 1.09002 * 109.47290 * 180.02562 * 4 2 1 38 38 H 1.09004 * 109.46732 * 300.00348 * 5 2 1 39 39 H 1.08989 * 109.47709 * 180.02562 * 5 2 1 40 40 H 1.07994 * 126.21909 * 0.05044 * 7 6 5 41 41 H 0.96995 * 120.00247 * 359.97438 * 9 8 7 42 42 H 1.08002 * 120.37399 * 359.97438 * 14 13 12 43 43 H 1.08999 * 109.47358 * 0.02562 * 16 15 14 44 44 H 0.96700 * 114.00311 * 300.00591 * 17 16 15 45 45 H 1.07990 * 119.83955 * 179.70340 * 22 15 14 46 46 H 1.08003 * 119.64442 * 180.30660 * 23 22 15 47 47 H 1.08006 * 125.62791 * 179.97438 * 26 25 24 48 48 H 1.07996 * 125.83500 * 179.72940 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8783 -1.5211 5 6 2.4840 -0.8782 1.5212 6 7 1.9957 -2.2594 1.5212 7 6 2.6258 -3.3303 0.9722 8 6 1.8447 -4.4196 1.1871 9 7 2.1282 -5.7364 0.7786 10 6 1.2620 -6.7301 1.0589 11 8 0.2345 -6.4889 1.6658 12 6 1.5569 -8.1013 0.6331 13 6 0.7547 -9.2385 0.8501 14 6 -0.4795 -9.4270 1.4854 15 6 -1.0188 -10.6794 1.5365 16 6 -2.3455 -10.9087 2.2136 17 8 -2.1772 -11.8328 3.2905 18 14 -3.5589 -11.6040 0.9827 19 1 -4.8660 -11.8305 1.6501 20 1 -3.7338 -10.6437 -0.1364 21 1 -3.0439 -12.8924 0.4536 22 6 -0.3254 -11.7515 0.9584 23 6 0.8617 -11.5453 0.3454 24 7 1.4083 -10.2985 0.2892 25 7 2.6012 -9.8225 -0.2685 26 6 2.6944 -8.5336 -0.0702 27 6 0.7022 -3.9986 1.8831 28 7 0.7959 -2.7097 2.0870 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.5740 1.7564 -0.0005 33 1 2.1207 2.2702 -0.8901 34 1 2.1207 2.2703 0.8899 35 1 2.1206 -1.9060 -1.5210 36 1 2.1207 -0.3646 -2.4111 37 1 3.5740 -0.8787 -1.5209 38 1 2.1206 -0.3643 2.4111 39 1 3.5739 -0.8778 1.5214 40 1 3.5757 -3.3174 0.4586 41 1 2.9470 -5.9287 0.2954 42 1 -0.9984 -8.5905 1.9298 43 1 -2.7237 -9.9629 2.6016 44 1 -1.8427 -12.6981 3.0177 45 1 -0.7435 -12.7463 0.9990 46 1 1.3844 -12.3784 -0.1008 47 1 3.5110 -7.9048 -0.3930 48 1 -0.1144 -4.6308 2.1989 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608520_11618758.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:46:31 Heat of formation + Delta-G solvation = 82.035344 kcal Electronic energy + Delta-G solvation = -30652.172587 eV Core-core repulsion = 26448.722548 eV Total energy + Delta-G solvation = -4203.450039 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 373.148 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.33213 -42.08719 -40.08938 -39.31978 -37.28371 -35.64770 -34.26316 -33.51375 -32.13590 -30.91860 -29.86881 -29.58976 -28.53930 -28.40277 -27.48786 -26.70802 -25.06747 -23.97337 -23.14655 -22.41482 -21.74856 -20.73015 -18.95433 -18.67941 -18.36401 -17.82290 -17.37459 -17.00076 -16.72637 -16.53736 -16.34038 -15.95511 -15.51846 -15.41906 -15.19405 -14.98886 -14.86169 -14.43873 -14.30606 -14.26939 -14.09771 -14.00869 -13.88465 -13.70594 -13.58023 -13.47590 -13.37742 -13.25439 -13.20832 -13.12561 -12.48799 -12.25868 -12.10832 -12.07318 -11.92308 -11.54807 -11.52841 -11.22684 -10.99895 -10.89179 -10.81375 -10.69193 -10.35686 -9.90986 -8.88968 -8.37586 -0.59265 -0.18262 0.80788 0.96071 0.98361 1.10358 1.30653 1.39757 1.44994 1.56360 1.72394 1.80947 1.92639 1.93721 2.14671 2.37310 2.46037 2.72560 3.04201 3.15588 3.31373 3.44311 3.61274 3.76235 3.82532 3.92494 3.97738 4.09740 4.23127 4.29271 4.43292 4.49972 4.54229 4.59737 4.61896 4.65199 4.67196 4.68038 4.80900 4.83296 4.84106 4.87849 5.06381 5.12640 5.23148 5.34215 5.36442 5.43842 5.60971 5.61445 6.05481 6.15508 6.28309 6.34827 6.57814 6.93961 7.38609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.446 4.446 2 Si 1.019 2.981 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.167 4.167 6 N -0.346 5.346 7 C 0.010 3.990 8 C 0.003 3.997 9 N -0.641 5.641 10 C 0.604 3.396 11 O -0.538 6.538 12 C -0.313 4.313 13 C 0.172 3.828 14 C -0.091 4.091 15 C -0.070 4.070 16 C -0.082 4.082 17 O -0.530 6.530 18 Si 0.950 3.050 19 H -0.242 1.242 20 H -0.247 1.247 21 H -0.247 1.247 22 C -0.162 4.162 23 C 0.123 3.877 24 N -0.267 5.267 25 N -0.312 5.312 26 C 0.121 3.879 27 C 0.047 3.953 28 N -0.283 5.283 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.175 0.825 41 H 0.407 0.593 42 H 0.166 0.834 43 H 0.127 0.873 44 H 0.375 0.625 45 H 0.161 0.839 46 H 0.178 0.822 47 H 0.199 0.801 48 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.748 -1.539 -3.407 4.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.554 4.554 2 Si 1.213 2.787 3 C -0.558 4.558 4 C -0.557 4.557 5 C -0.333 4.333 6 N -0.129 5.129 7 C -0.138 4.138 8 C -0.102 4.102 9 N -0.285 5.285 10 C 0.394 3.606 11 O -0.416 6.416 12 C -0.328 4.328 13 C 0.051 3.949 14 C -0.111 4.111 15 C -0.076 4.076 16 C -0.191 4.191 17 O -0.335 6.335 18 Si 0.770 3.230 19 H -0.165 1.165 20 H -0.170 1.170 21 H -0.170 1.170 22 C -0.184 4.184 23 C -0.003 4.003 24 N -0.030 5.030 25 N -0.132 5.132 26 C -0.061 4.061 27 C -0.139 4.139 28 N -0.106 5.106 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.122 0.878 39 H 0.116 0.884 40 H 0.192 0.808 41 H 0.242 0.758 42 H 0.184 0.816 43 H 0.145 0.855 44 H 0.223 0.777 45 H 0.179 0.821 46 H 0.196 0.804 47 H 0.216 0.784 48 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 1.432 -1.090 -3.244 3.709 hybrid contribution 1.388 -0.461 -0.282 1.489 sum 2.820 -1.551 -3.526 4.774 Atomic orbital electron populations 1.26066 1.20065 1.04933 1.04349 0.79376 0.68114 0.66306 0.64874 1.26101 1.06361 1.18313 1.05044 1.26125 1.06102 1.08338 1.15181 1.26923 1.04370 0.83365 1.18690 1.47948 1.15717 1.06293 1.42905 1.21841 1.00269 0.86559 1.05132 1.17616 0.98392 0.84613 1.09546 1.42443 1.23929 1.04563 1.57567 1.16740 0.82633 0.82783 0.78451 1.90670 1.26117 1.83281 1.41549 1.19435 1.00098 0.93293 1.19998 1.19257 0.93425 0.87476 0.94772 1.20736 0.92592 0.98533 0.99190 1.20506 0.97331 0.93268 0.96450 1.25096 0.97869 0.98974 0.97194 1.86625 1.88580 1.25909 1.32352 0.85699 0.79030 0.80927 0.77386 1.16521 1.17018 1.17023 1.20770 0.95008 1.00945 1.01658 1.21552 0.94449 0.85305 0.99041 1.46086 1.14968 1.06609 1.35386 1.77646 0.98949 1.12513 1.24092 1.24078 0.96844 0.92073 0.93079 1.24488 0.98990 0.91683 0.98732 1.77451 1.01213 1.12346 1.19617 0.91056 0.91287 0.90950 0.91000 0.90620 0.90881 0.91061 0.90808 0.91147 0.87785 0.88397 0.80798 0.75831 0.81621 0.85529 0.77738 0.82125 0.80448 0.78404 0.77831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 -0.04 8.65 101.05 0.87 0.84 16 2 Si 1.02 -2.81 12.79 -169.99 -2.17 -4.98 16 3 C -0.45 1.18 8.65 101.05 0.87 2.05 16 4 C -0.45 0.91 8.65 101.05 0.87 1.79 16 5 C -0.17 0.25 5.59 59.85 0.33 0.59 16 6 N -0.35 -0.54 3.01 -9.17 -0.03 -0.57 16 7 C 0.01 0.00 11.44 -16.66 -0.19 -0.19 16 8 C 0.00 0.01 6.90 -83.89 -0.58 -0.57 16 9 N -0.64 -0.46 5.46 -11.24 -0.06 -0.52 16 10 C 0.60 1.84 7.75 -12.90 -0.10 1.74 16 11 O -0.54 -3.01 12.86 5.14 0.07 -2.94 16 12 C -0.31 -0.68 6.17 -104.68 -0.65 -1.32 16 13 C 0.17 0.43 6.76 -84.07 -0.57 -0.14 16 14 C -0.09 -0.12 9.35 -39.53 -0.37 -0.49 16 15 C -0.07 0.06 4.53 -104.55 -0.47 -0.42 16 16 C -0.08 0.15 2.84 36.00 0.10 0.25 16 17 O -0.53 0.62 12.87 -35.23 -0.45 0.16 16 18 Si 0.95 -1.93 27.27 -169.99 -4.64 -6.57 16 19 H -0.24 0.13 7.11 56.52 0.40 0.53 16 20 H -0.25 0.12 7.11 56.52 0.40 0.52 16 21 H -0.25 0.68 7.05 56.52 0.40 1.08 16 22 C -0.16 0.42 8.38 -39.95 -0.33 0.08 16 23 C 0.12 -0.17 11.17 -16.68 -0.19 -0.35 16 24 N -0.27 -0.46 3.86 -10.54 -0.04 -0.50 16 25 N -0.31 -0.69 12.57 30.75 0.39 -0.30 16 26 C 0.12 0.03 11.44 -17.15 -0.20 -0.16 16 27 C 0.05 0.22 10.83 -17.22 -0.19 0.03 16 28 N -0.28 -1.31 12.57 30.70 0.39 -0.92 16 29 H 0.07 0.02 7.96 -51.93 -0.41 -0.39 16 30 H 0.07 -0.02 7.96 -51.93 -0.41 -0.44 16 31 H 0.07 0.15 7.96 -51.93 -0.41 -0.26 16 32 H 0.07 -0.22 7.96 -51.93 -0.41 -0.64 16 33 H 0.07 -0.17 7.96 -51.93 -0.41 -0.59 16 34 H 0.07 -0.18 7.96 -51.94 -0.41 -0.60 16 35 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 36 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 37 H 0.07 -0.21 7.96 -51.93 -0.41 -0.62 16 38 H 0.10 -0.14 7.96 -51.93 -0.41 -0.56 16 39 H 0.10 -0.36 7.96 -51.94 -0.41 -0.77 16 40 H 0.17 -0.57 8.06 -52.49 -0.42 -0.99 16 41 H 0.41 -1.17 7.75 -40.82 -0.32 -1.49 16 42 H 0.17 0.25 7.01 -52.49 -0.37 -0.12 16 43 H 0.13 -0.27 7.70 -51.93 -0.40 -0.67 16 44 H 0.38 -1.93 8.07 45.56 0.37 -1.57 16 45 H 0.16 -0.97 7.26 -52.49 -0.38 -1.35 16 46 H 0.18 -0.75 8.06 -52.48 -0.42 -1.17 16 47 H 0.20 -0.82 7.46 -52.48 -0.39 -1.22 16 48 H 0.21 1.09 5.91 -52.49 -0.31 0.78 16 LS Contribution 408.52 15.07 6.16 6.16 Total: 0.00 -11.63 408.52 -7.16 -18.79 By element: Atomic # 1 Polarization: -5.55 SS G_CDS: -5.99 Total: -11.54 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -0.77 Total: 3.73 kcal Atomic # 7 Polarization: -3.45 SS G_CDS: 0.64 Total: -2.81 kcal Atomic # 8 Polarization: -2.39 SS G_CDS: -0.39 Total: -2.78 kcal Atomic # 14 Polarization: -4.74 SS G_CDS: -6.81 Total: -11.55 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -11.63 -7.16 -18.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_11618758.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.827 kcal (2) G-P(sol) polarization free energy of solvation -11.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds