Wall clock time and date at job start Sun Mar 7 2021 09:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86298 * 109.47165 * 2 1 4 4 C 1.86299 * 109.47092 * 239.99637 * 2 1 3 5 5 C 1.86303 * 109.47376 * 119.99875 * 2 1 3 6 6 N 1.46500 * 109.47042 * 59.99602 * 5 2 1 7 7 C 1.35846 * 126.05471 * 90.00585 * 6 5 2 8 8 C 1.35756 * 107.55618 * 180.02562 * 7 6 5 9 9 N 1.40759 * 126.07247 * 179.97438 * 8 7 6 10 10 C 1.34773 * 119.99674 * 179.97438 * 9 8 7 11 11 O 1.21750 * 120.00106 * 359.97438 * 10 9 8 12 12 C 1.46571 * 119.99990 * 179.97438 * 10 9 8 13 13 C 1.40851 * 126.57677 * 180.02562 * 12 10 9 14 14 C 1.40086 * 132.87159 * 0.02562 * 13 12 10 15 15 C 1.36453 * 119.25702 * 179.97438 * 14 13 12 16 16 C 1.50696 * 120.29305 * 180.02562 * 15 14 13 17 17 O 1.42903 * 109.47131 * 239.99655 * 16 15 14 18 18 Si 1.86305 * 109.47185 * 120.00195 * 16 15 14 19 19 H 1.48499 * 109.47126 * 179.97438 * 18 16 15 20 20 H 1.48496 * 109.46885 * 299.99843 * 18 16 15 21 21 H 1.48499 * 109.46850 * 59.99646 * 18 16 15 22 22 C 1.40163 * 119.41050 * 0.27833 * 15 14 13 23 23 C 1.35185 * 120.31624 * 359.43705 * 22 15 14 24 24 N 1.36248 * 120.70664 * 0.56682 * 23 22 15 25 25 N 1.40017 * 132.01638 * 179.73878 * 24 23 22 26 26 C 1.30738 * 109.60316 * 179.97438 * 25 24 23 27 27 C 1.40245 * 107.84628 * 0.24039 * 8 7 6 28 28 N 1.30837 * 108.34219 * 359.58873 * 27 8 7 29 29 H 1.09003 * 109.46961 * 300.00348 * 1 2 3 30 30 H 1.08996 * 109.46886 * 60.00425 * 1 2 3 31 31 H 1.09002 * 109.46901 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47054 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46868 * 299.99349 * 3 2 1 34 34 H 1.08989 * 109.47486 * 59.99893 * 3 2 1 35 35 H 1.09002 * 109.47386 * 299.99872 * 4 2 1 36 36 H 1.08996 * 109.47306 * 60.00195 * 4 2 1 37 37 H 1.09002 * 109.47290 * 180.02562 * 4 2 1 38 38 H 1.09004 * 109.46732 * 300.00348 * 5 2 1 39 39 H 1.08989 * 109.47709 * 180.02562 * 5 2 1 40 40 H 1.07994 * 126.21909 * 0.05044 * 7 6 5 41 41 H 0.96995 * 120.00247 * 359.97438 * 9 8 7 42 42 H 1.08002 * 120.37399 * 359.97438 * 14 13 12 43 43 H 1.08999 * 109.47358 * 0.02562 * 16 15 14 44 44 H 0.96700 * 114.00311 * 300.00591 * 17 16 15 45 45 H 1.07990 * 119.83955 * 179.70340 * 22 15 14 46 46 H 1.08003 * 119.64442 * 180.30660 * 23 22 15 47 47 H 1.08006 * 125.62791 * 179.97438 * 26 25 24 48 48 H 1.07996 * 125.83500 * 179.72940 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8783 -1.5211 5 6 2.4840 -0.8782 1.5212 6 7 1.9957 -2.2594 1.5212 7 6 2.6258 -3.3303 0.9722 8 6 1.8447 -4.4196 1.1871 9 7 2.1282 -5.7364 0.7786 10 6 1.2620 -6.7301 1.0589 11 8 0.2345 -6.4889 1.6658 12 6 1.5569 -8.1013 0.6331 13 6 0.7547 -9.2385 0.8501 14 6 -0.4795 -9.4270 1.4854 15 6 -1.0188 -10.6794 1.5365 16 6 -2.3455 -10.9087 2.2136 17 8 -2.1772 -11.8328 3.2905 18 14 -3.5589 -11.6040 0.9827 19 1 -4.8660 -11.8305 1.6501 20 1 -3.7338 -10.6437 -0.1364 21 1 -3.0439 -12.8924 0.4536 22 6 -0.3254 -11.7515 0.9584 23 6 0.8617 -11.5453 0.3454 24 7 1.4083 -10.2985 0.2892 25 7 2.6012 -9.8225 -0.2685 26 6 2.6944 -8.5336 -0.0702 27 6 0.7022 -3.9986 1.8831 28 7 0.7959 -2.7097 2.0870 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.5740 1.7564 -0.0005 33 1 2.1207 2.2702 -0.8901 34 1 2.1207 2.2703 0.8899 35 1 2.1206 -1.9060 -1.5210 36 1 2.1207 -0.3646 -2.4111 37 1 3.5740 -0.8787 -1.5209 38 1 2.1206 -0.3643 2.4111 39 1 3.5739 -0.8778 1.5214 40 1 3.5757 -3.3174 0.4586 41 1 2.9470 -5.9287 0.2954 42 1 -0.9984 -8.5905 1.9298 43 1 -2.7237 -9.9629 2.6016 44 1 -1.8427 -12.6981 3.0177 45 1 -0.7435 -12.7463 0.9990 46 1 1.3844 -12.3784 -0.1008 47 1 3.5110 -7.9048 -0.3930 48 1 -0.1144 -4.6308 2.1989 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_11618758.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:46:30 Heat of formation + Delta-G solvation = 82.296414 kcal Electronic energy + Delta-G solvation = -30652.161266 eV Core-core repulsion = 26448.722548 eV Total energy + Delta-G solvation = -4203.438718 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 373.148 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -43.32847 -42.22496 -40.21976 -39.28733 -37.20710 -35.79769 -34.25782 -33.59827 -32.10981 -30.99012 -29.85923 -29.46909 -28.36446 -28.32012 -27.46072 -26.72176 -25.03323 -24.03155 -23.11101 -22.52390 -21.82814 -20.85329 -18.98144 -18.65107 -18.34068 -17.76787 -17.37859 -17.02832 -16.74604 -16.54658 -16.39858 -15.90323 -15.55519 -15.42565 -15.23285 -15.00589 -14.89205 -14.32014 -14.16535 -14.14122 -14.05161 -13.97408 -13.81056 -13.76459 -13.50659 -13.39661 -13.20529 -13.18416 -13.12401 -13.00987 -12.42261 -12.19577 -12.12491 -12.08274 -11.83426 -11.72057 -11.54648 -11.31810 -10.90733 -10.83420 -10.78763 -10.75836 -10.26903 -9.98381 -8.94032 -8.45979 -0.58258 -0.13371 0.75889 1.01740 1.03268 1.11184 1.42317 1.45066 1.57508 1.69836 1.76267 1.89417 1.93879 2.07295 2.13495 2.32033 2.58757 2.60363 3.09027 3.25523 3.45045 3.62694 3.70863 3.79355 3.88019 3.95005 4.03701 4.20675 4.33020 4.37812 4.41152 4.60221 4.66042 4.70976 4.72655 4.75951 4.77355 4.81752 4.84392 4.85629 4.88381 4.89945 5.10883 5.14666 5.21705 5.27570 5.52563 5.61839 5.65291 5.66860 5.84719 6.13587 6.28210 6.55087 6.70081 6.76434 7.28707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.475 4.475 2 Si 1.095 2.905 3 C -0.454 4.454 4 C -0.458 4.458 5 C -0.189 4.189 6 N -0.341 5.341 7 C 0.030 3.970 8 C -0.018 4.018 9 N -0.626 5.626 10 C 0.597 3.403 11 O -0.576 6.576 12 C -0.338 4.338 13 C 0.153 3.847 14 C -0.123 4.123 15 C -0.057 4.057 16 C -0.083 4.083 17 O -0.545 6.545 18 Si 0.989 3.011 19 H -0.265 1.265 20 H -0.275 1.275 21 H -0.219 1.219 22 C -0.157 4.157 23 C 0.116 3.884 24 N -0.274 5.274 25 N -0.338 5.338 26 C 0.133 3.867 27 C 0.022 3.978 28 N -0.319 5.319 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.045 0.955 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.102 0.898 39 H 0.132 0.868 40 H 0.221 0.779 41 H 0.425 0.575 42 H 0.149 0.851 43 H 0.120 0.880 44 H 0.394 0.606 45 H 0.204 0.796 46 H 0.209 0.791 47 H 0.238 0.762 48 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.416 -2.473 -4.627 7.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.579 4.579 2 Si 1.284 2.716 3 C -0.563 4.563 4 C -0.566 4.566 5 C -0.353 4.353 6 N -0.124 5.124 7 C -0.120 4.120 8 C -0.123 4.123 9 N -0.271 5.271 10 C 0.388 3.612 11 O -0.457 6.457 12 C -0.353 4.353 13 C 0.032 3.968 14 C -0.143 4.143 15 C -0.063 4.063 16 C -0.192 4.192 17 O -0.353 6.353 18 Si 0.809 3.191 19 H -0.189 1.189 20 H -0.200 1.200 21 H -0.140 1.140 22 C -0.178 4.178 23 C -0.010 4.010 24 N -0.038 5.038 25 N -0.158 5.158 26 C -0.048 4.048 27 C -0.163 4.163 28 N -0.144 5.144 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.107 0.893 38 H 0.120 0.880 39 H 0.150 0.850 40 H 0.237 0.763 41 H 0.263 0.737 42 H 0.167 0.833 43 H 0.138 0.862 44 H 0.244 0.756 45 H 0.220 0.780 46 H 0.226 0.774 47 H 0.254 0.746 48 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 4.111 -2.052 -4.466 6.407 hybrid contribution 0.464 -0.150 0.126 0.504 sum 4.575 -2.202 -4.340 6.679 Atomic orbital electron populations 1.26507 1.24426 1.03013 1.03939 0.78256 0.64005 0.65835 0.63512 1.26134 1.07315 1.17847 1.05001 1.26221 1.07437 1.07665 1.15284 1.27387 1.06595 0.81832 1.19461 1.48264 1.14712 1.07632 1.41756 1.22511 1.00871 0.85147 1.03429 1.17770 0.98310 0.85827 1.10356 1.42261 1.24167 1.03586 1.57105 1.17005 0.82455 0.83584 0.78146 1.90655 1.27801 1.83878 1.43398 1.19480 1.01373 0.92791 1.21648 1.19496 0.93894 0.88271 0.95156 1.20706 0.93187 0.99288 1.01119 1.20756 0.97336 0.93006 0.95234 1.25170 0.97565 0.99069 0.97394 1.86600 1.88767 1.27118 1.32795 0.85176 0.77413 0.81082 0.75456 1.18928 1.19999 1.14046 1.21263 0.94307 1.02046 1.00135 1.22304 0.94874 0.85103 0.98687 1.46333 1.14873 1.07269 1.35290 1.77567 0.99609 1.13363 1.25250 1.24648 0.96876 0.91804 0.91501 1.24312 0.99824 0.91979 1.00224 1.77373 1.03289 1.12429 1.21270 0.91902 0.91274 0.93560 0.89615 0.90732 0.90944 0.92121 0.91021 0.89265 0.87999 0.85026 0.76276 0.73675 0.83322 0.86235 0.75617 0.77959 0.77408 0.74618 0.80011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 -1.04 8.65 113.37 0.98 -0.06 16 2 Si 1.09 -6.74 12.79 68.60 0.88 -5.86 16 3 C -0.45 3.10 8.65 113.37 0.98 4.08 16 4 C -0.46 2.53 8.65 113.37 0.98 3.51 16 5 C -0.19 0.78 5.59 127.77 0.71 1.49 16 6 N -0.34 -1.13 3.01 -182.91 -0.55 -1.68 16 7 C 0.03 0.00 11.44 83.50 0.96 0.96 16 8 C -0.02 -0.11 6.90 37.62 0.26 0.15 16 9 N -0.63 -1.61 5.46 -307.66 -1.68 -3.29 16 10 C 0.60 5.29 7.75 86.42 0.67 5.96 16 11 O -0.58 -9.09 12.86 -4.51 -0.06 -9.15 16 12 C -0.34 -2.12 6.17 -19.90 -0.12 -2.24 16 13 C 0.15 1.09 6.76 39.49 0.27 1.36 16 14 C -0.12 -0.68 9.35 22.30 0.21 -0.47 16 15 C -0.06 0.05 4.53 -19.82 -0.09 -0.04 16 16 C -0.08 0.23 2.84 71.23 0.20 0.43 16 17 O -0.55 1.39 12.87 -148.98 -1.92 -0.53 16 18 Si 0.99 -4.06 27.27 68.60 1.87 -2.19 16 19 H -0.27 0.09 7.11 99.48 0.71 0.80 16 20 H -0.28 -0.13 7.11 99.48 0.71 0.58 16 21 H -0.22 1.86 7.05 99.48 0.70 2.56 16 22 C -0.16 1.00 8.38 22.03 0.18 1.19 16 23 C 0.12 -0.42 11.17 83.30 0.93 0.51 16 24 N -0.27 -1.07 3.86 -187.27 -0.72 -1.79 16 25 N -0.34 -1.52 12.57 -56.62 -0.71 -2.23 16 26 C 0.13 0.10 11.44 85.42 0.98 1.08 16 27 C 0.02 0.28 10.83 85.33 0.92 1.20 16 28 N -0.32 -3.79 12.57 -56.78 -0.71 -4.50 16 29 H 0.06 0.20 7.96 -2.39 -0.02 0.18 16 30 H 0.07 0.09 7.96 -2.39 -0.02 0.07 16 31 H 0.05 0.34 7.96 -2.39 -0.02 0.32 16 32 H 0.08 -0.77 7.96 -2.39 -0.02 -0.79 16 33 H 0.07 -0.44 7.96 -2.38 -0.02 -0.46 16 34 H 0.07 -0.45 7.96 -2.39 -0.02 -0.46 16 35 H 0.06 -0.17 7.96 -2.39 -0.02 -0.19 16 36 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 37 H 0.09 -0.80 7.96 -2.39 -0.02 -0.82 16 38 H 0.10 -0.31 7.96 -2.39 -0.02 -0.33 16 39 H 0.13 -1.40 7.96 -2.39 -0.02 -1.42 16 40 H 0.22 -2.20 8.06 -2.91 -0.02 -2.22 16 41 H 0.42 -2.63 7.75 -92.71 -0.72 -3.35 16 42 H 0.15 1.18 7.01 -2.91 -0.02 1.16 16 43 H 0.12 -0.21 7.70 -2.39 -0.02 -0.22 16 44 H 0.39 -4.68 8.07 -74.06 -0.60 -5.27 16 45 H 0.20 -3.14 7.26 -2.92 -0.02 -3.16 16 46 H 0.21 -2.22 8.06 -2.91 -0.02 -2.25 16 47 H 0.24 -2.26 7.46 -2.91 -0.02 -2.28 16 48 H 0.18 2.98 5.91 -2.91 -0.02 2.96 16 Total: 0.00 -32.92 408.52 5.86 -27.06 By element: Atomic # 1 Polarization: -15.38 SS G_CDS: 0.45 Total: -14.93 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: 9.03 Total: 19.11 kcal Atomic # 7 Polarization: -9.12 SS G_CDS: -4.38 Total: -13.50 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -1.98 Total: -9.68 kcal Atomic # 14 Polarization: -10.80 SS G_CDS: 2.75 Total: -8.05 kcal Total: -32.92 5.86 -27.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_11618758.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.352 kcal (2) G-P(sol) polarization free energy of solvation -32.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds