Wall clock time and date at job start Sun Mar 7 2021 09:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35449 * 125.56867 * 2 1 4 4 C 1.50704 * 126.06193 * 359.97438 * 3 2 1 5 5 O 1.42899 * 109.46862 * 123.27482 * 4 3 2 6 6 Si 1.86299 * 109.46801 * 243.27402 * 4 3 2 7 7 H 1.48504 * 109.46982 * 174.29740 * 6 4 3 8 8 H 1.48492 * 109.47277 * 294.30007 * 6 4 3 9 9 H 1.48496 * 109.47355 * 54.30383 * 6 4 3 10 10 C 1.39837 * 107.86679 * 180.02562 * 3 2 1 11 11 C 1.50699 * 126.45488 * 180.02562 * 10 3 2 12 12 C 1.37876 * 107.09037 * 0.02562 * 10 3 2 13 13 C 1.46664 * 126.23413 * 180.02562 * 12 10 3 14 14 O 1.21717 * 120.00399 * 359.97438 * 13 12 10 15 15 N 1.34780 * 119.99778 * 179.97438 * 13 12 10 16 16 C 1.40717 * 119.99974 * 179.72075 * 15 13 12 17 17 C 1.35765 * 126.08210 * 180.27733 * 16 15 13 18 18 N 1.35841 * 107.55916 * 179.97438 * 17 16 15 19 19 C 1.46494 * 126.05513 * 180.02562 * 18 17 16 20 20 Si 1.86305 * 109.46794 * 90.00127 * 19 18 17 21 21 C 1.86303 * 109.47456 * 60.00078 * 20 19 18 22 22 C 1.86302 * 109.46985 * 180.02562 * 20 19 18 23 23 C 1.86300 * 109.47301 * 299.99713 * 20 19 18 24 24 N 1.40072 * 107.89032 * 359.97438 * 18 17 16 25 25 C 1.30834 * 108.37366 * 359.74097 * 24 18 17 26 26 N 1.35560 * 125.56542 * 180.33572 * 2 1 3 27 27 H 1.08996 * 109.47670 * 84.69628 * 1 2 3 28 28 H 1.09007 * 109.47247 * 204.69944 * 1 2 3 29 29 H 1.09002 * 109.47385 * 324.69254 * 1 2 3 30 30 H 1.09004 * 109.47330 * 3.27415 * 4 3 2 31 31 H 0.96696 * 113.99794 * 179.97438 * 5 4 3 32 32 H 1.08999 * 109.47249 * 270.00199 * 11 10 3 33 33 H 1.08997 * 109.47018 * 30.00523 * 11 10 3 34 34 H 1.09005 * 109.47126 * 150.00419 * 11 10 3 35 35 H 0.96999 * 120.00177 * 0.02562 * 15 13 12 36 36 H 1.07997 * 126.21981 * 359.95395 * 17 16 15 37 37 H 1.09000 * 109.47608 * 209.99717 * 19 18 17 38 38 H 1.08992 * 109.47328 * 330.00282 * 19 18 17 39 39 H 1.09003 * 109.46536 * 59.99576 * 21 20 19 40 40 H 1.08994 * 109.47209 * 179.97438 * 21 20 19 41 41 H 1.09003 * 109.46830 * 300.00015 * 21 20 19 42 42 H 1.09001 * 109.47457 * 59.99864 * 22 20 19 43 43 H 1.08999 * 109.47087 * 180.02562 * 22 20 19 44 44 H 1.09008 * 109.47145 * 299.99765 * 22 20 19 45 45 H 1.09003 * 109.46869 * 60.00056 * 23 20 19 46 46 H 1.08999 * 109.47029 * 179.97438 * 23 20 19 47 47 H 1.08995 * 109.47574 * 300.00561 * 23 20 19 48 48 H 1.08002 * 125.83234 * 180.26615 * 25 24 18 49 49 H 0.97001 * 125.67839 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1018 0.0000 4 6 1.8199 2.5320 -0.0005 5 8 2.3709 3.2173 1.1259 6 14 2.3745 3.3698 -1.5694 7 1 1.7916 4.7341 -1.6346 8 1 3.8564 3.4634 -1.5834 9 1 1.9173 2.5799 -2.7407 10 6 3.6270 0.6766 -0.0006 11 6 4.8486 1.5590 -0.0003 12 6 3.6123 -0.7021 -0.0015 13 6 4.7860 -1.5816 -0.0019 14 8 5.9051 -1.1031 -0.0018 15 7 4.6253 -2.9198 -0.0023 16 6 5.7513 -3.7636 -0.0086 17 6 5.7332 -5.1212 -0.0150 18 7 7.0227 -5.5483 -0.0202 19 6 7.4688 -6.9436 -0.0285 20 14 7.6539 -7.5258 -1.7885 21 6 8.9117 -6.4665 -2.6641 22 6 8.2205 -9.3006 -1.7991 23 6 6.0139 -7.3931 -2.6623 24 7 7.8503 -4.4182 -0.0174 25 6 7.0922 -3.3518 -0.0164 26 7 2.2954 -1.1027 -0.0065 27 1 -0.3634 0.0950 -1.0232 28 1 -0.3634 -0.9337 0.4294 29 1 -0.3634 0.8386 0.5940 30 1 0.7316 2.5536 0.0577 31 1 2.1072 4.1454 1.1892 32 1 5.1429 1.7725 -1.0278 33 1 4.6221 2.4928 0.5143 34 1 5.6644 1.0499 0.5130 35 1 3.7334 -3.3012 -0.0028 36 1 4.8534 -5.7476 -0.0156 37 1 8.4283 -7.0214 0.4827 38 1 6.7329 -7.5634 0.4837 39 1 9.8712 -6.5443 -2.1528 40 1 9.0202 -6.8075 -3.6937 41 1 8.5797 -5.4283 -2.6579 42 1 7.4843 -9.9201 -1.2870 43 1 8.3292 -9.6411 -2.8288 44 1 9.1800 -9.3788 -1.2877 45 1 5.6819 -6.3548 -2.6561 46 1 6.1223 -7.7333 -3.6922 47 1 5.2780 -8.0128 -2.1501 48 1 7.4394 -2.3292 -0.0184 49 1 1.9835 -2.0212 -0.0122 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_12297754.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:46:44 Heat of formation + Delta-G solvation = 11.935150 kcal Electronic energy + Delta-G solvation = -28659.030996 eV Core-core repulsion = 24747.107898 eV Total energy + Delta-G solvation = -3911.923098 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 350.169 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.73902 -42.18954 -40.11774 -37.60451 -36.07347 -33.84741 -33.75728 -32.93412 -30.54122 -29.54852 -29.20028 -28.39463 -28.36864 -27.78902 -26.85935 -26.03336 -23.31489 -22.31243 -21.65855 -20.53107 -19.98685 -19.13973 -18.39335 -18.24962 -16.89960 -16.78538 -16.64311 -16.23125 -15.88002 -15.33824 -15.25104 -15.12163 -14.79189 -14.48346 -14.22135 -14.17177 -14.14542 -14.01915 -13.97605 -13.84484 -13.83571 -13.49816 -13.43372 -13.22693 -13.18504 -13.15632 -13.13103 -13.04009 -12.51222 -12.44625 -12.22475 -12.16074 -11.79287 -11.65369 -11.40573 -11.01316 -10.86466 -10.82258 -10.44486 -10.05890 -9.48464 -9.07744 -8.58699 0.25655 0.81549 1.13946 1.32985 1.45512 1.54561 1.61791 1.65205 1.76515 1.85712 1.92336 2.04990 2.10809 2.22910 2.39922 2.56102 3.64528 3.68828 3.78663 3.92851 3.96066 4.12066 4.23115 4.25307 4.45794 4.50949 4.53750 4.65709 4.67163 4.68707 4.70926 4.73287 4.79844 4.81191 4.82053 4.85618 4.85784 4.87216 4.96952 5.02922 5.16703 5.24674 5.31796 5.49747 5.58450 5.64179 5.70135 5.74346 5.87108 6.05114 6.35248 6.53715 6.67292 6.98974 7.07822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.096 3.904 3 C -0.200 4.200 4 C -0.029 4.029 5 O -0.562 6.562 6 Si 0.953 3.047 7 H -0.251 1.251 8 H -0.272 1.272 9 H -0.269 1.269 10 C -0.068 4.068 11 C -0.094 4.094 12 C -0.078 4.078 13 C 0.587 3.413 14 O -0.551 6.551 15 N -0.628 5.628 16 C -0.023 4.023 17 C 0.033 3.967 18 N -0.339 5.339 19 C -0.190 4.190 20 Si 1.095 2.905 21 C -0.476 4.476 22 C -0.454 4.454 23 C -0.458 4.458 24 N -0.317 5.317 25 C 0.023 3.977 26 N -0.521 5.521 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.394 0.606 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.421 0.579 36 H 0.222 0.778 37 H 0.103 0.897 38 H 0.133 0.867 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.045 0.955 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.059 0.941 46 H 0.071 0.929 47 H 0.089 0.911 48 H 0.183 0.817 49 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.620 -6.208 -0.592 12.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.024 4.024 3 C -0.206 4.206 4 C -0.141 4.141 5 O -0.370 6.370 6 Si 0.778 3.222 7 H -0.174 1.174 8 H -0.197 1.197 9 H -0.194 1.194 10 C -0.076 4.076 11 C -0.151 4.151 12 C -0.190 4.190 13 C 0.377 3.623 14 O -0.430 6.430 15 N -0.274 5.274 16 C -0.127 4.127 17 C -0.116 4.116 18 N -0.121 5.121 19 C -0.354 4.354 20 Si 1.284 2.716 21 C -0.580 4.580 22 C -0.563 4.563 23 C -0.566 4.566 24 N -0.141 5.141 25 C -0.162 4.162 26 N -0.120 5.120 27 H 0.114 0.886 28 H 0.108 0.892 29 H 0.115 0.885 30 H 0.118 0.882 31 H 0.244 0.756 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.258 0.742 36 H 0.238 0.762 37 H 0.121 0.879 38 H 0.151 0.849 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.064 0.936 42 H 0.104 0.896 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.078 0.922 46 H 0.090 0.910 47 H 0.108 0.892 48 H 0.199 0.801 49 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -8.049 -6.754 -1.200 10.576 hybrid contribution -0.927 0.511 0.247 1.087 sum -8.976 -6.243 -0.953 10.975 Atomic orbital electron populations 1.20694 0.84366 1.05474 1.04878 1.20746 0.95039 0.84740 1.01850 1.18711 0.91916 0.94382 1.15599 1.23817 1.00889 0.91412 0.97988 1.86505 1.74964 1.28919 1.46655 0.85744 0.80407 0.79279 0.76731 1.17415 1.19677 1.19405 1.19937 0.95606 0.91485 1.00619 1.20421 0.94496 0.98691 1.01492 1.19645 0.83456 0.93401 1.22483 1.17153 0.87577 0.81252 0.76294 1.90713 1.25437 1.75370 1.51443 1.42378 1.07959 1.04182 1.72872 1.17750 0.87577 0.89979 1.17443 1.22518 0.90203 0.93225 1.05647 1.48292 1.03345 1.05948 1.54548 1.27415 1.06191 0.78029 1.23726 0.78262 0.66016 0.65374 0.61963 1.26522 1.13278 1.09585 1.08599 1.26133 1.06676 1.18228 1.05253 1.26215 1.17366 1.04394 1.08597 1.77394 1.19318 0.92130 1.25283 1.24311 0.91196 0.98853 1.01882 1.41704 1.03951 1.09329 1.57024 0.88557 0.89154 0.88510 0.88245 0.75649 0.92316 0.90517 0.91824 0.74161 0.76180 0.87893 0.84879 0.91897 0.91251 0.93613 0.89558 0.90705 0.90938 0.92187 0.90966 0.89186 0.80051 0.72529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.95 9.96 71.23 0.71 1.65 16 2 C 0.10 -0.17 7.13 41.34 0.29 0.13 16 3 C -0.20 -0.78 4.52 -20.12 -0.09 -0.88 16 4 C -0.03 0.00 2.78 71.24 0.20 0.20 16 5 O -0.56 -0.78 11.71 -148.98 -1.74 -2.53 16 6 Si 0.95 1.80 26.77 68.60 1.84 3.64 16 7 H -0.25 -0.09 7.11 99.48 0.71 0.61 16 8 H -0.27 -1.93 6.09 99.48 0.61 -1.32 16 9 H -0.27 -1.15 7.11 99.48 0.71 -0.44 16 10 C -0.07 -0.62 5.86 -19.56 -0.11 -0.73 16 11 C -0.09 -1.08 8.04 71.24 0.57 -0.50 16 12 C -0.08 -0.47 7.05 40.35 0.28 -0.19 16 13 C 0.59 5.17 7.76 86.44 0.67 5.84 16 14 O -0.55 -9.04 11.95 -4.40 -0.05 -9.10 16 15 N -0.63 -1.18 5.47 -307.60 -1.68 -2.86 16 16 C -0.02 -0.13 6.90 37.63 0.26 0.13 16 17 C 0.03 -0.02 11.44 83.50 0.96 0.93 16 18 N -0.34 -0.93 3.01 -182.91 -0.55 -1.48 16 19 C -0.19 0.90 5.59 127.77 0.71 1.61 16 20 Si 1.09 -7.28 12.79 68.60 0.88 -6.40 16 21 C -0.48 -0.94 8.65 113.37 0.98 0.04 16 22 C -0.45 3.31 8.65 113.37 0.98 4.29 16 23 C -0.46 2.84 8.65 113.37 0.98 3.82 16 24 N -0.32 -3.66 12.56 -56.76 -0.71 -4.38 16 25 C 0.02 0.28 10.84 85.34 0.92 1.21 16 26 N -0.52 1.37 5.99 -171.93 -1.03 0.34 16 27 H 0.10 -1.13 8.14 -2.39 -0.02 -1.15 16 28 H 0.09 -1.18 8.14 -2.38 -0.02 -1.20 16 29 H 0.10 -1.02 7.29 -2.39 -0.02 -1.04 16 30 H 0.10 -0.65 6.66 -2.39 -0.02 -0.67 16 31 H 0.39 -3.08 8.74 -74.06 -0.65 -3.72 16 32 H 0.06 0.69 7.58 -2.39 -0.02 0.68 16 33 H 0.08 0.78 6.69 -2.39 -0.02 0.77 16 34 H 0.06 0.94 6.48 -2.38 -0.02 0.92 16 35 H 0.42 -3.00 7.95 -92.71 -0.74 -3.74 16 36 H 0.22 -2.43 8.06 -2.91 -0.02 -2.46 16 37 H 0.10 -0.37 7.96 -2.39 -0.02 -0.39 16 38 H 0.13 -1.52 7.96 -2.39 -0.02 -1.54 16 39 H 0.06 0.19 7.96 -2.39 -0.02 0.17 16 40 H 0.07 0.08 7.96 -2.39 -0.02 0.06 16 41 H 0.04 0.33 7.96 -2.39 -0.02 0.31 16 42 H 0.09 -0.82 7.96 -2.39 -0.02 -0.84 16 43 H 0.07 -0.47 7.96 -2.39 -0.02 -0.49 16 44 H 0.07 -0.47 7.96 -2.38 -0.02 -0.49 16 45 H 0.06 -0.21 7.96 -2.39 -0.02 -0.23 16 46 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 47 H 0.09 -0.88 7.96 -2.39 -0.02 -0.90 16 48 H 0.18 2.99 5.91 -2.91 -0.02 2.98 16 49 H 0.43 -4.70 8.19 -92.71 -0.76 -5.46 16 Total: 0.00 -29.94 401.82 4.77 -25.17 By element: Atomic # 1 Polarization: -19.48 SS G_CDS: -0.50 Total: -19.98 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: 8.32 Total: 17.57 kcal Atomic # 7 Polarization: -4.40 SS G_CDS: -3.98 Total: -8.38 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: -1.80 Total: -11.62 kcal Atomic # 14 Polarization: -5.47 SS G_CDS: 2.71 Total: -2.76 kcal Total: -29.94 4.77 -25.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_12297754.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.104 kcal (2) G-P(sol) polarization free energy of solvation -29.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds