Wall clock time and date at job start Sun Mar 7 2021 09:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35721 * 116.99699 * 2 1 4 4 C 1.38684 * 119.86304 * 0.02562 * 3 2 1 5 5 C 1.38442 * 120.03202 * 179.72096 * 4 3 2 6 6 O 1.35661 * 120.12082 * 180.25390 * 5 4 3 7 7 C 1.42899 * 117.00148 * 0.02562 * 6 5 4 8 8 C 1.40304 * 119.75930 * 0.28003 * 5 4 3 9 9 C 1.47291 * 120.13315 * 179.97438 * 8 5 4 10 10 O 1.21644 * 120.00504 * 359.97438 * 9 8 5 11 11 N 1.34779 * 119.99859 * 179.97438 * 9 8 5 12 12 C 1.40727 * 120.00039 * 179.97438 * 11 9 8 13 13 C 1.35766 * 126.07950 * 179.97438 * 12 11 9 14 14 N 1.35834 * 107.55801 * 180.02562 * 13 12 11 15 15 C 1.46497 * 126.05316 * 179.97438 * 14 13 12 16 16 Si 1.86295 * 109.47570 * 89.99666 * 15 14 13 17 17 C 1.86303 * 109.47104 * 59.99696 * 16 15 14 18 18 C 1.86291 * 109.47547 * 179.97438 * 16 15 14 19 19 C 1.86302 * 109.46967 * 300.00136 * 16 15 14 20 20 N 1.40065 * 107.89292 * 359.97438 * 14 13 12 21 21 C 1.30842 * 108.37088 * 359.72010 * 20 14 13 22 22 C 1.39857 * 119.72604 * 359.97438 * 8 5 4 23 23 C 1.37545 * 119.96584 * 0.02562 * 22 8 5 24 24 C 1.50702 * 119.87964 * 179.97438 * 23 22 8 25 25 O 1.42894 * 109.47184 * 254.99908 * 24 23 22 26 26 Si 1.86307 * 109.47103 * 14.99936 * 24 23 22 27 27 H 1.48496 * 109.46863 * 59.99712 * 26 24 23 28 28 H 1.48500 * 109.47103 * 180.02562 * 26 24 23 29 29 H 1.48504 * 109.46674 * 300.00136 * 26 24 23 30 30 H 1.08996 * 109.47456 * 60.00009 * 1 2 3 31 31 H 1.09000 * 109.47270 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47146 * 299.99720 * 1 2 3 33 33 H 1.08002 * 119.98739 * 0.02562 * 4 3 2 34 34 H 1.09009 * 109.46782 * 59.99676 * 7 6 5 35 35 H 1.08991 * 109.47271 * 179.97438 * 7 6 5 36 36 H 1.09000 * 109.47121 * 300.00224 * 7 6 5 37 37 H 0.97003 * 119.99793 * 359.97438 * 11 9 8 38 38 H 1.07996 * 126.21990 * 359.96368 * 13 12 11 39 39 H 1.08998 * 109.47107 * 210.00169 * 15 14 13 40 40 H 1.09005 * 109.46849 * 329.99409 * 15 14 13 41 41 H 1.09006 * 109.46663 * 60.00350 * 17 16 15 42 42 H 1.08994 * 109.47280 * 179.97438 * 17 16 15 43 43 H 1.09005 * 109.47061 * 300.00398 * 17 16 15 44 44 H 1.09011 * 109.47204 * 59.99888 * 18 16 15 45 45 H 1.08994 * 109.47505 * 180.02562 * 18 16 15 46 46 H 1.08998 * 109.47168 * 300.00526 * 18 16 15 47 47 H 1.09005 * 109.47264 * 59.99562 * 19 16 15 48 48 H 1.09004 * 109.46925 * 179.97438 * 19 16 15 49 49 H 1.09000 * 109.47368 * 299.99668 * 19 16 15 50 50 H 1.08000 * 125.82919 * 180.28749 * 21 20 14 51 51 H 1.07999 * 120.01459 * 180.02562 * 22 8 5 52 52 H 1.09004 * 109.47005 * 134.99628 * 24 23 22 53 53 H 0.96703 * 114.00391 * 59.99650 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2869 2.3706 0.0005 5 6 1.9117 3.6060 0.0064 6 8 1.1718 4.7430 0.0121 7 6 -0.2492 4.5924 0.0123 8 6 3.3129 3.6777 0.0058 9 6 3.9862 4.9877 0.0114 10 8 3.3274 6.0103 0.0161 11 7 5.3324 5.0535 0.0113 12 6 5.9757 6.3051 0.0162 13 6 7.3171 6.5146 0.0172 14 7 7.5222 7.8574 0.0228 15 6 8.8231 8.5309 0.0263 16 14 9.3757 8.8236 -1.7286 17 6 8.1253 9.8925 -2.6032 18 6 11.0297 9.6808 -1.7241 19 6 9.5241 7.1909 -2.6134 20 7 6.2695 8.4840 0.0248 21 6 5.3452 7.5579 0.0144 22 6 4.0676 2.5003 -0.0002 23 6 3.4351 1.2789 -0.0059 24 6 4.2503 0.0113 -0.0129 25 8 4.2137 -0.5713 -1.3172 26 14 6.0135 0.4044 0.4425 27 1 6.0514 1.0099 1.7979 28 1 6.8169 -0.8445 0.4350 29 1 6.5777 1.3613 -0.5431 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.2085 2.3112 0.0014 34 1 -0.5557 4.0389 0.9000 35 1 -0.7188 5.5760 0.0177 36 1 -0.5569 4.0472 -0.8799 37 1 5.8578 4.2381 0.0080 38 1 8.0821 5.7522 0.0150 39 1 8.7363 9.4861 0.5441 40 1 9.5546 7.9054 0.5381 41 1 8.0385 10.8478 -2.0854 42 1 8.4488 10.0642 -3.6298 43 1 7.1573 9.3913 -2.6058 44 1 11.7615 9.0557 -1.2122 45 1 11.3527 9.8525 -2.7508 46 1 10.9425 10.6361 -1.2065 47 1 8.5561 6.6897 -2.6160 48 1 9.8469 7.3622 -3.6403 49 1 10.2556 6.5654 -2.1018 50 1 4.2788 7.7291 0.0085 51 1 5.1465 2.5501 -0.0002 52 1 3.8361 -0.6910 0.7106 53 1 4.5676 -0.0006 -2.0130 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_12297780.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:50:18 Heat of formation + Delta-G solvation = -58.481228 kcal Electronic energy + Delta-G solvation = -35112.316142 eV Core-core repulsion = 30497.174948 eV Total energy + Delta-G solvation = -4615.141195 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 393.172 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.41991 -41.92649 -40.43747 -39.80388 -38.44334 -36.97034 -35.86445 -33.71128 -32.24777 -31.97534 -30.23725 -29.50209 -28.96947 -28.36616 -28.33824 -28.14908 -26.93564 -26.07992 -24.75906 -23.16963 -22.59674 -21.86424 -21.03906 -20.04427 -18.71163 -18.59858 -17.96982 -17.77011 -17.21541 -16.94008 -16.64436 -16.51205 -16.48342 -16.28941 -15.79433 -15.73552 -15.63831 -15.37515 -15.08582 -15.00220 -14.51919 -14.17424 -14.14334 -14.02169 -14.00185 -13.81814 -13.79997 -13.54192 -13.40154 -13.26723 -13.19878 -13.12568 -13.01146 -12.64239 -12.52849 -12.50514 -12.19371 -12.14424 -12.04891 -11.74677 -11.70187 -11.63851 -11.34463 -10.88245 -10.83716 -10.78973 -10.32172 -10.00897 -9.93104 -9.25303 -8.56720 -0.30454 0.07822 0.80668 1.20021 1.37322 1.44982 1.48153 1.59089 1.68678 1.88553 1.98092 2.01094 2.06436 2.12974 2.17227 2.23876 2.58987 2.64820 3.42377 3.51913 3.61055 3.74224 3.78437 3.84886 4.00350 4.11070 4.15557 4.23634 4.28825 4.29852 4.30683 4.32983 4.54845 4.63258 4.65143 4.69558 4.70985 4.72267 4.74510 4.75546 4.76836 4.84319 4.85467 4.88076 4.89753 4.93978 5.04272 5.12457 5.29085 5.52406 5.61725 5.66692 5.80385 6.04659 6.10195 6.29167 6.45281 6.72353 6.81658 7.20043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.309 6.309 3 C 0.219 3.781 4 C -0.310 4.310 5 C 0.220 3.780 6 O -0.303 6.303 7 C 0.010 3.990 8 C -0.223 4.223 9 C 0.561 3.439 10 O -0.547 6.547 11 N -0.632 5.632 12 C -0.021 4.021 13 C 0.029 3.971 14 N -0.339 5.339 15 C -0.190 4.190 16 Si 1.094 2.906 17 C -0.475 4.475 18 C -0.454 4.454 19 C -0.459 4.459 20 N -0.317 5.317 21 C 0.023 3.977 22 C -0.008 4.008 23 C -0.200 4.200 24 C -0.069 4.069 25 O -0.551 6.551 26 Si 0.962 3.038 27 H -0.249 1.249 28 H -0.271 1.271 29 H -0.222 1.222 30 H 0.068 0.932 31 H 0.120 0.880 32 H 0.070 0.930 33 H 0.164 0.836 34 H 0.072 0.928 35 H 0.112 0.888 36 H 0.072 0.928 37 H 0.420 0.580 38 H 0.221 0.779 39 H 0.102 0.898 40 H 0.132 0.868 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.045 0.955 44 H 0.085 0.915 45 H 0.074 0.926 46 H 0.071 0.929 47 H 0.060 0.940 48 H 0.071 0.929 49 H 0.089 0.911 50 H 0.182 0.818 51 H 0.158 0.842 52 H 0.112 0.888 53 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.622 -5.131 -0.202 6.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.220 6.220 3 C 0.171 3.829 4 C -0.329 4.329 5 C 0.171 3.829 6 O -0.214 6.214 7 C -0.084 4.084 8 C -0.227 4.227 9 C 0.351 3.649 10 O -0.425 6.425 11 N -0.279 5.279 12 C -0.125 4.125 13 C -0.120 4.120 14 N -0.122 5.122 15 C -0.353 4.353 16 Si 1.283 2.717 17 C -0.579 4.579 18 C -0.563 4.563 19 C -0.566 4.566 20 N -0.141 5.141 21 C -0.162 4.162 22 C -0.026 4.026 23 C -0.201 4.201 24 C -0.178 4.178 25 O -0.358 6.358 26 Si 0.783 3.217 27 H -0.172 1.172 28 H -0.196 1.196 29 H -0.145 1.145 30 H 0.086 0.914 31 H 0.138 0.862 32 H 0.088 0.912 33 H 0.182 0.818 34 H 0.090 0.910 35 H 0.130 0.870 36 H 0.090 0.910 37 H 0.258 0.742 38 H 0.238 0.762 39 H 0.121 0.879 40 H 0.151 0.849 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.064 0.936 44 H 0.104 0.896 45 H 0.093 0.907 46 H 0.091 0.909 47 H 0.079 0.921 48 H 0.090 0.910 49 H 0.108 0.892 50 H 0.199 0.801 51 H 0.175 0.825 52 H 0.130 0.870 53 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 4.141 -3.390 0.411 5.367 hybrid contribution -1.454 -0.632 -0.299 1.614 sum 2.686 -4.022 0.113 4.838 Atomic orbital electron populations 1.23476 0.76136 1.06064 1.02596 1.86152 1.23559 1.25959 1.86344 1.18898 0.91645 0.84144 0.88236 1.21432 1.02180 0.90591 1.18723 1.18932 0.90070 0.85629 0.88278 1.86366 1.20735 1.28354 1.85968 1.23473 0.76643 1.05576 1.02690 1.18935 0.90942 0.92972 1.19832 1.18085 0.81550 0.88930 0.76332 1.90715 1.65213 1.36493 1.50085 1.42514 1.05794 1.06596 1.73038 1.17780 0.91481 0.86175 1.17084 1.22524 0.95908 0.87604 1.05941 1.48271 1.05400 1.03839 1.54675 1.27407 0.81837 1.02466 1.23614 0.78277 0.65004 0.66388 0.62055 1.26510 1.12318 1.10510 1.08556 1.26130 1.16620 1.08286 1.05232 1.26221 1.04678 1.17061 1.08671 1.77379 0.89002 1.22412 1.25329 1.24289 1.00196 0.89749 1.01919 1.20975 0.99984 0.89343 0.92339 1.19588 0.91555 0.96191 1.12774 1.24917 1.09724 0.94008 0.89150 1.86527 1.87068 1.45511 1.16685 0.85579 0.73782 0.80649 0.81651 1.17197 1.19586 1.14490 0.91376 0.86198 0.91151 0.81827 0.90960 0.86993 0.90982 0.74163 0.76235 0.87912 0.84942 0.91910 0.91254 0.93564 0.89595 0.90713 0.90949 0.92101 0.90957 0.89222 0.80095 0.82536 0.86973 0.76444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.06 9.80 113.37 1.11 1.05 16 2 O -0.31 -0.47 9.80 -90.43 -0.89 -1.35 16 3 C 0.22 0.45 6.67 22.60 0.15 0.60 16 4 C -0.31 -0.46 8.01 22.42 0.18 -0.28 16 5 C 0.22 1.37 6.70 22.82 0.15 1.52 16 6 O -0.30 -2.59 8.56 -68.81 -0.59 -3.18 16 7 C 0.01 -0.01 9.81 113.37 1.11 1.10 16 8 C -0.22 -1.24 5.89 -20.00 -0.12 -1.36 16 9 C 0.56 5.31 7.73 86.62 0.67 5.98 16 10 O -0.55 -9.33 12.30 16.80 0.21 -9.12 16 11 N -0.63 -2.27 5.42 -307.09 -1.66 -3.93 16 12 C -0.02 -0.14 6.90 37.63 0.26 0.12 16 13 C 0.03 0.01 11.44 83.50 0.96 0.96 16 14 N -0.34 -1.10 3.01 -182.91 -0.55 -1.65 16 15 C -0.19 0.82 5.59 127.77 0.71 1.54 16 16 Si 1.09 -6.94 12.79 68.60 0.88 -6.06 16 17 C -0.47 -0.97 8.65 113.37 0.98 0.01 16 18 C -0.45 3.20 8.65 113.37 0.98 4.18 16 19 C -0.46 2.66 8.65 113.37 0.98 3.64 16 20 N -0.32 -3.75 12.56 -56.76 -0.71 -4.46 16 21 C 0.02 0.31 10.84 85.33 0.92 1.23 16 22 C -0.01 0.00 8.14 22.50 0.18 0.19 16 23 C -0.20 -0.10 5.27 -19.80 -0.10 -0.20 16 24 C -0.07 0.09 2.37 71.24 0.17 0.26 16 25 O -0.55 -0.09 12.88 -148.98 -1.92 -2.01 16 26 Si 0.96 -4.44 25.48 68.60 1.75 -2.70 16 27 H -0.25 0.95 7.11 99.48 0.71 1.66 16 28 H -0.27 0.14 7.11 99.48 0.71 0.85 16 29 H -0.22 2.00 6.73 99.48 0.67 2.67 16 30 H 0.07 -0.49 7.65 -2.39 -0.02 -0.51 16 31 H 0.12 -1.00 8.14 -2.39 -0.02 -1.02 16 32 H 0.07 -0.55 7.65 -2.39 -0.02 -0.56 16 33 H 0.16 -0.58 4.50 -2.91 -0.01 -0.59 16 34 H 0.07 -0.31 7.66 -2.38 -0.02 -0.33 16 35 H 0.11 -0.29 8.14 -2.39 -0.02 -0.30 16 36 H 0.07 -0.31 7.66 -2.39 -0.02 -0.33 16 37 H 0.42 -1.85 6.84 -92.71 -0.63 -2.49 16 38 H 0.22 -2.19 8.06 -2.91 -0.02 -2.22 16 39 H 0.10 -0.34 7.96 -2.39 -0.02 -0.36 16 40 H 0.13 -1.45 7.96 -2.38 -0.02 -1.47 16 41 H 0.06 0.19 7.96 -2.38 -0.02 0.17 16 42 H 0.07 0.08 7.96 -2.39 -0.02 0.06 16 43 H 0.05 0.34 7.96 -2.38 -0.02 0.32 16 44 H 0.08 -0.79 7.96 -2.38 -0.02 -0.81 16 45 H 0.07 -0.46 7.96 -2.39 -0.02 -0.48 16 46 H 0.07 -0.46 7.96 -2.39 -0.02 -0.48 16 47 H 0.06 -0.19 7.96 -2.38 -0.02 -0.20 16 48 H 0.07 -0.35 7.96 -2.38 -0.02 -0.37 16 49 H 0.09 -0.83 7.96 -2.39 -0.02 -0.85 16 50 H 0.18 3.08 5.91 -2.91 -0.02 3.07 16 51 H 0.16 -0.99 3.19 -2.91 -0.01 -0.99 16 52 H 0.11 -0.07 7.81 -2.39 -0.02 -0.09 16 53 H 0.39 -2.73 8.70 -74.06 -0.64 -3.37 16 Total: 0.00 -29.18 434.35 6.21 -22.97 By element: Atomic # 1 Polarization: -9.44 SS G_CDS: 0.40 Total: -9.03 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: 9.30 Total: 20.53 kcal Atomic # 7 Polarization: -7.12 SS G_CDS: -2.93 Total: -10.05 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: -3.19 Total: -15.66 kcal Atomic # 14 Polarization: -11.38 SS G_CDS: 2.63 Total: -8.76 kcal Total: -29.18 6.21 -22.97 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_12297780.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.511 kcal (2) G-P(sol) polarization free energy of solvation -29.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds