Wall clock time and date at job start Sun Mar 7 2021 09:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86305 * 109.47240 * 2 1 4 4 C 1.86301 * 109.46837 * 240.00018 * 2 1 3 5 5 C 1.86295 * 109.47085 * 120.00096 * 2 1 3 6 6 N 1.46507 * 109.47039 * 59.99847 * 5 2 1 7 7 C 1.35821 * 126.05053 * 90.00033 * 6 5 2 8 8 C 1.35774 * 107.55785 * 179.97438 * 7 6 5 9 9 N 1.40711 * 126.08232 * 179.97438 * 8 7 6 10 10 C 1.34777 * 120.00208 * 180.02562 * 9 8 7 11 11 O 1.21599 * 119.99721 * 359.97438 * 10 9 8 12 12 C 1.47676 * 120.00325 * 180.02562 * 10 9 8 13 13 C 1.39629 * 120.16474 * 359.71681 * 12 10 9 14 14 C 1.37898 * 119.87285 * 179.77299 * 13 12 10 15 15 C 1.50697 * 119.88762 * 180.25443 * 14 13 12 16 16 O 1.42898 * 109.47525 * 65.25175 * 15 14 13 17 17 Si 1.86301 * 109.47292 * 185.25625 * 15 14 13 18 18 H 1.48498 * 109.47187 * 59.99232 * 17 15 14 19 19 H 1.48502 * 109.47427 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.46636 * 299.99708 * 17 15 14 21 21 C 1.38414 * 120.22047 * 0.50941 * 14 13 12 22 22 C 1.38247 * 120.34061 * 359.74364 * 21 14 13 23 23 C 1.38277 * 120.11801 * 0.02562 * 22 21 14 24 24 F 1.35102 * 120.11369 * 179.97438 * 23 22 21 25 25 C 1.40258 * 107.83640 * 0.02562 * 8 7 6 26 26 N 1.30831 * 108.33761 * 359.97438 * 25 8 7 27 27 H 1.09006 * 109.46980 * 299.99841 * 1 2 3 28 28 H 1.09003 * 109.47063 * 59.99415 * 1 2 3 29 29 H 1.08997 * 109.47555 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46547 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.46948 * 299.99913 * 3 2 1 32 32 H 1.08997 * 109.46997 * 60.00444 * 3 2 1 33 33 H 1.09000 * 109.47343 * 299.99957 * 4 2 1 34 34 H 1.09001 * 109.47339 * 60.00553 * 4 2 1 35 35 H 1.09010 * 109.47016 * 180.02562 * 4 2 1 36 36 H 1.08997 * 109.47487 * 299.99761 * 5 2 1 37 37 H 1.09004 * 109.47454 * 179.97438 * 5 2 1 38 38 H 1.08001 * 126.22557 * 0.24516 * 7 6 5 39 39 H 0.97001 * 119.99731 * 359.97438 * 9 8 7 40 40 H 1.08000 * 120.05752 * 0.02562 * 13 12 10 41 41 H 1.09004 * 109.47424 * 305.25135 * 15 14 13 42 42 H 0.96702 * 114.00214 * 180.02562 * 16 15 14 43 43 H 1.08002 * 119.83041 * 179.72561 * 21 14 13 44 44 H 1.07994 * 119.94528 * 179.97438 * 22 21 14 45 45 H 1.08000 * 125.83562 * 179.97438 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4839 -0.8782 -1.5212 5 6 2.4840 -0.8782 1.5211 6 7 1.9956 -2.2595 1.5211 7 6 2.6257 -3.3301 0.9720 8 6 1.8451 -4.4198 1.1878 9 7 2.1286 -5.7363 0.7797 10 6 1.2625 -6.7301 1.0600 11 8 0.2362 -6.4891 1.6660 12 6 1.5603 -8.1118 0.6322 13 6 2.7354 -8.3916 -0.0681 14 6 3.0098 -9.6847 -0.4605 15 6 4.2807 -9.9880 -1.2113 16 8 5.4050 -9.7379 -0.3654 17 14 4.2820 -11.7763 -1.7334 18 1 3.1137 -12.0362 -2.6124 19 1 5.5347 -12.0754 -2.4727 20 1 4.1989 -12.6432 -0.5305 21 6 2.1192 -10.7042 -0.1718 22 6 0.9505 -10.4365 0.5165 23 6 0.6636 -9.1457 0.9209 24 9 -0.4787 -8.8840 1.5930 25 6 0.7052 -3.9998 1.8888 26 7 0.7962 -2.7098 2.0874 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.5741 1.7564 0.0005 31 1 2.1207 2.2703 -0.8900 32 1 2.1208 2.2703 0.8900 33 1 2.1206 -1.9059 -1.5212 34 1 2.1206 -0.3644 -2.4112 35 1 3.5740 -0.8787 -1.5210 36 1 2.1207 -0.3644 2.4111 37 1 3.5740 -0.8787 1.5209 38 1 3.5770 -3.3177 0.4608 39 1 2.9472 -5.9284 0.2959 40 1 3.4301 -7.5973 -0.2983 41 1 4.3418 -9.3518 -2.0943 42 1 6.2590 -9.9120 -0.7845 43 1 2.3383 -11.7140 -0.4860 44 1 0.2600 -11.2367 0.7380 45 1 -0.1087 -4.6329 2.2099 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608520_12335834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:50:35 Heat of formation + Delta-G solvation = -35.787682 kcal Electronic energy + Delta-G solvation = -28174.884969 eV Core-core repulsion = 24039.713487 eV Total energy + Delta-G solvation = -4135.171482 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 351.133 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.81807 -42.25446 -41.04313 -39.74247 -37.65449 -35.85887 -33.77495 -32.77942 -32.45278 -30.23925 -29.66267 -28.56722 -28.42621 -27.11099 -26.71483 -25.41292 -23.48590 -22.53584 -21.77183 -20.90702 -19.14209 -18.74838 -18.31998 -18.12367 -17.58222 -16.80445 -16.61407 -16.45181 -16.37078 -15.97615 -15.72299 -15.57668 -14.99440 -14.88285 -14.71984 -14.36445 -14.32309 -14.29893 -14.07449 -13.92600 -13.91922 -13.74870 -13.52645 -13.40344 -13.35986 -13.23598 -13.15030 -12.76871 -12.54890 -12.20182 -12.14392 -11.90501 -11.60474 -11.31460 -11.02670 -10.92673 -10.89948 -10.54122 -10.37709 -9.97369 -9.82506 -8.53131 -0.51854 -0.07713 0.82082 0.95138 1.28114 1.30547 1.34754 1.47155 1.60976 1.69809 1.74839 1.85130 2.10246 2.16558 2.43048 2.57571 3.03671 3.11696 3.36887 3.47574 3.60805 3.72622 3.87036 3.93495 4.01645 4.13981 4.29953 4.46458 4.50671 4.57346 4.59504 4.61755 4.62819 4.64343 4.69914 4.77930 4.78893 4.82227 4.84500 4.86420 5.07405 5.20043 5.33794 5.40993 5.54522 5.59576 5.97084 6.06913 6.37319 6.37812 6.85577 7.15412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.447 4.447 2 Si 1.019 2.981 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.169 4.169 6 N -0.344 5.344 7 C 0.016 3.984 8 C -0.004 4.004 9 N -0.636 5.636 10 C 0.561 3.439 11 O -0.509 6.509 12 C -0.171 4.171 13 C -0.028 4.028 14 C -0.095 4.095 15 C -0.081 4.081 16 O -0.544 6.544 17 Si 0.941 3.059 18 H -0.246 1.246 19 H -0.253 1.253 20 H -0.245 1.245 21 C -0.065 4.065 22 C -0.155 4.155 23 C 0.170 3.830 24 F -0.109 7.109 25 C 0.048 3.952 26 N -0.281 5.281 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.176 0.824 39 H 0.409 0.591 40 H 0.140 0.860 41 H 0.082 0.918 42 H 0.383 0.617 43 H 0.136 0.864 44 H 0.151 0.849 45 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.999 -0.505 -5.838 9.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.555 4.555 2 Si 1.213 2.787 3 C -0.558 4.558 4 C -0.557 4.557 5 C -0.335 4.335 6 N -0.127 5.127 7 C -0.133 4.133 8 C -0.108 4.108 9 N -0.282 5.282 10 C 0.349 3.651 11 O -0.385 6.385 12 C -0.176 4.176 13 C -0.047 4.047 14 C -0.095 4.095 15 C -0.191 4.191 16 O -0.350 6.350 17 Si 0.763 3.237 18 H -0.170 1.170 19 H -0.177 1.177 20 H -0.168 1.168 21 C -0.083 4.083 22 C -0.173 4.173 23 C 0.149 3.851 24 F -0.087 7.087 25 C -0.138 4.138 26 N -0.104 5.104 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.123 0.877 37 H 0.117 0.883 38 H 0.193 0.807 39 H 0.245 0.755 40 H 0.157 0.843 41 H 0.099 0.901 42 H 0.231 0.769 43 H 0.154 0.846 44 H 0.168 0.832 45 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 5.250 0.086 -4.651 7.014 hybrid contribution 1.259 -0.571 -0.656 1.530 sum 6.509 -0.485 -5.307 8.412 Atomic orbital electron populations 1.26071 1.20042 1.04942 1.04401 0.79383 0.68130 0.66368 0.64811 1.26097 1.06367 1.18250 1.05082 1.26124 1.06112 1.08306 1.15201 1.26958 1.04428 0.83241 1.18824 1.47983 1.15634 1.06365 1.42672 1.21856 1.00146 0.86504 1.04780 1.17613 0.98743 0.84472 1.09982 1.42568 1.23854 1.04723 1.57026 1.17887 0.83368 0.84036 0.79809 1.90757 1.25304 1.82978 1.39455 1.19896 0.97696 0.93220 1.06740 1.20991 0.93655 0.96874 0.93181 1.19196 0.95491 0.93359 1.01456 1.24690 0.86096 1.12654 0.95685 1.86503 1.15753 1.91271 1.41511 0.85797 0.81920 0.75268 0.80708 1.16987 1.17664 1.16836 1.21092 0.92972 0.99040 0.95207 1.21121 0.99287 0.95451 1.01471 1.17688 0.82625 0.92695 0.92102 1.91636 1.46099 1.94571 1.76414 1.24493 0.98954 0.91760 0.98595 1.77469 1.01192 1.12203 1.19522 0.91029 0.91239 0.90969 0.90981 0.90581 0.90860 0.91098 0.90749 0.91121 0.87682 0.88299 0.80657 0.75483 0.84280 0.90055 0.76869 0.84636 0.83158 0.77847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 -0.03 8.65 101.05 0.87 0.85 16 2 Si 1.02 -2.93 12.79 -169.99 -2.17 -5.10 16 3 C -0.45 1.24 8.65 101.05 0.87 2.11 16 4 C -0.45 1.01 8.65 101.05 0.87 1.89 16 5 C -0.17 0.27 5.59 59.85 0.33 0.61 16 6 N -0.34 -0.53 3.01 -9.16 -0.03 -0.56 16 7 C 0.02 0.01 11.44 -16.67 -0.19 -0.18 16 8 C 0.00 -0.01 6.90 -83.90 -0.58 -0.59 16 9 N -0.64 -0.56 5.42 -10.94 -0.06 -0.62 16 10 C 0.56 1.90 7.74 -12.41 -0.10 1.80 16 11 O -0.51 -3.46 12.49 5.28 0.07 -3.40 16 12 C -0.17 -0.28 5.88 -104.92 -0.62 -0.90 16 13 C -0.03 0.03 9.17 -39.19 -0.36 -0.33 16 14 C -0.09 0.10 5.38 -104.68 -0.56 -0.46 16 15 C -0.08 0.25 2.79 36.00 0.10 0.35 16 16 O -0.54 1.35 12.81 -35.23 -0.45 0.90 16 17 Si 0.94 -2.61 25.13 -169.99 -4.27 -6.88 16 18 H -0.25 0.54 7.11 56.52 0.40 0.94 16 19 H -0.25 0.60 7.11 56.52 0.40 1.00 16 20 H -0.24 0.33 7.04 56.52 0.40 0.73 16 21 C -0.07 0.06 8.66 -39.51 -0.34 -0.28 16 22 C -0.15 0.01 10.01 -39.56 -0.40 -0.39 16 23 C 0.17 0.41 7.29 -38.96 -0.28 0.12 16 24 F -0.11 -0.54 15.55 2.25 0.04 -0.50 16 25 C 0.05 0.24 10.83 -17.22 -0.19 0.05 16 26 N -0.28 -1.34 12.56 30.71 0.39 -0.95 16 27 H 0.07 0.02 7.96 -51.93 -0.41 -0.39 16 28 H 0.07 -0.03 7.96 -51.93 -0.41 -0.44 16 29 H 0.07 0.15 7.96 -51.93 -0.41 -0.26 16 30 H 0.07 -0.23 7.96 -51.93 -0.41 -0.65 16 31 H 0.08 -0.19 7.96 -51.93 -0.41 -0.60 16 32 H 0.07 -0.19 7.96 -51.93 -0.41 -0.60 16 33 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 34 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 35 H 0.07 -0.23 7.96 -51.92 -0.41 -0.64 16 36 H 0.10 -0.16 7.96 -51.93 -0.41 -0.57 16 37 H 0.10 -0.38 7.96 -51.93 -0.41 -0.80 16 38 H 0.18 -0.61 8.06 -52.49 -0.42 -1.03 16 39 H 0.41 -1.09 6.86 -40.82 -0.28 -1.37 16 40 H 0.14 -0.50 6.40 -52.49 -0.34 -0.84 16 41 H 0.08 -0.42 7.96 -51.93 -0.41 -0.83 16 42 H 0.38 -2.54 8.74 45.56 0.40 -2.14 16 43 H 0.14 -0.36 4.84 -52.49 -0.25 -0.61 16 44 H 0.15 -0.31 8.06 -52.49 -0.42 -0.74 16 45 H 0.21 1.22 5.91 -52.49 -0.31 0.91 16 LS Contribution 383.09 15.07 5.77 5.77 Total: 0.00 -10.02 383.09 -6.67 -16.68 By element: Atomic # 1 Polarization: -4.60 SS G_CDS: -5.39 Total: -9.99 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: -0.56 Total: 4.64 kcal Atomic # 7 Polarization: -2.43 SS G_CDS: 0.30 Total: -2.13 kcal Atomic # 8 Polarization: -2.11 SS G_CDS: -0.39 Total: -2.50 kcal Atomic # 9 Polarization: -0.54 SS G_CDS: 0.04 Total: -0.50 kcal Atomic # 14 Polarization: -5.53 SS G_CDS: -6.45 Total: -11.98 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -10.02 -6.67 -16.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_12335834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.104 kcal (2) G-P(sol) polarization free energy of solvation -10.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds