Wall clock time and date at job start Sun Mar 7 2021 09:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86305 * 109.47240 * 2 1 4 4 C 1.86301 * 109.46837 * 240.00018 * 2 1 3 5 5 C 1.86295 * 109.47085 * 120.00096 * 2 1 3 6 6 N 1.46507 * 109.47039 * 59.99847 * 5 2 1 7 7 C 1.35821 * 126.05053 * 90.00033 * 6 5 2 8 8 C 1.35774 * 107.55785 * 179.97438 * 7 6 5 9 9 N 1.40711 * 126.08232 * 179.97438 * 8 7 6 10 10 C 1.34777 * 120.00208 * 180.02562 * 9 8 7 11 11 O 1.21599 * 119.99721 * 359.97438 * 10 9 8 12 12 C 1.47676 * 120.00325 * 180.02562 * 10 9 8 13 13 C 1.39629 * 120.16474 * 359.71681 * 12 10 9 14 14 C 1.37898 * 119.87285 * 179.77299 * 13 12 10 15 15 C 1.50697 * 119.88762 * 180.25443 * 14 13 12 16 16 O 1.42898 * 109.47525 * 65.25175 * 15 14 13 17 17 Si 1.86301 * 109.47292 * 185.25625 * 15 14 13 18 18 H 1.48498 * 109.47187 * 59.99232 * 17 15 14 19 19 H 1.48502 * 109.47427 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.46636 * 299.99708 * 17 15 14 21 21 C 1.38414 * 120.22047 * 0.50941 * 14 13 12 22 22 C 1.38247 * 120.34061 * 359.74364 * 21 14 13 23 23 C 1.38277 * 120.11801 * 0.02562 * 22 21 14 24 24 F 1.35102 * 120.11369 * 179.97438 * 23 22 21 25 25 C 1.40258 * 107.83640 * 0.02562 * 8 7 6 26 26 N 1.30831 * 108.33761 * 359.97438 * 25 8 7 27 27 H 1.09006 * 109.46980 * 299.99841 * 1 2 3 28 28 H 1.09003 * 109.47063 * 59.99415 * 1 2 3 29 29 H 1.08997 * 109.47555 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46547 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.46948 * 299.99913 * 3 2 1 32 32 H 1.08997 * 109.46997 * 60.00444 * 3 2 1 33 33 H 1.09000 * 109.47343 * 299.99957 * 4 2 1 34 34 H 1.09001 * 109.47339 * 60.00553 * 4 2 1 35 35 H 1.09010 * 109.47016 * 180.02562 * 4 2 1 36 36 H 1.08997 * 109.47487 * 299.99761 * 5 2 1 37 37 H 1.09004 * 109.47454 * 179.97438 * 5 2 1 38 38 H 1.08001 * 126.22557 * 0.24516 * 7 6 5 39 39 H 0.97001 * 119.99731 * 359.97438 * 9 8 7 40 40 H 1.08000 * 120.05752 * 0.02562 * 13 12 10 41 41 H 1.09004 * 109.47424 * 305.25135 * 15 14 13 42 42 H 0.96702 * 114.00214 * 180.02562 * 16 15 14 43 43 H 1.08002 * 119.83041 * 179.72561 * 21 14 13 44 44 H 1.07994 * 119.94528 * 179.97438 * 22 21 14 45 45 H 1.08000 * 125.83562 * 179.97438 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4839 -0.8782 -1.5212 5 6 2.4840 -0.8782 1.5211 6 7 1.9956 -2.2595 1.5211 7 6 2.6257 -3.3301 0.9720 8 6 1.8451 -4.4198 1.1878 9 7 2.1286 -5.7363 0.7797 10 6 1.2625 -6.7301 1.0600 11 8 0.2362 -6.4891 1.6660 12 6 1.5603 -8.1118 0.6322 13 6 2.7354 -8.3916 -0.0681 14 6 3.0098 -9.6847 -0.4605 15 6 4.2807 -9.9880 -1.2113 16 8 5.4050 -9.7379 -0.3654 17 14 4.2820 -11.7763 -1.7334 18 1 3.1137 -12.0362 -2.6124 19 1 5.5347 -12.0754 -2.4727 20 1 4.1989 -12.6432 -0.5305 21 6 2.1192 -10.7042 -0.1718 22 6 0.9505 -10.4365 0.5165 23 6 0.6636 -9.1457 0.9209 24 9 -0.4787 -8.8840 1.5930 25 6 0.7052 -3.9998 1.8888 26 7 0.7962 -2.7098 2.0874 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.5741 1.7564 0.0005 31 1 2.1207 2.2703 -0.8900 32 1 2.1208 2.2703 0.8900 33 1 2.1206 -1.9059 -1.5212 34 1 2.1206 -0.3644 -2.4112 35 1 3.5740 -0.8787 -1.5210 36 1 2.1207 -0.3644 2.4111 37 1 3.5740 -0.8787 1.5209 38 1 3.5770 -3.3177 0.4608 39 1 2.9472 -5.9284 0.2959 40 1 3.4301 -7.5973 -0.2983 41 1 4.3418 -9.3518 -2.0943 42 1 6.2590 -9.9120 -0.7845 43 1 2.3383 -11.7140 -0.4860 44 1 0.2600 -11.2367 0.7380 45 1 -0.1087 -4.6329 2.2099 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_12335834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:50:34 Heat of formation + Delta-G solvation = -34.167606 kcal Electronic energy + Delta-G solvation = -28174.814717 eV Core-core repulsion = 24039.713487 eV Total energy + Delta-G solvation = -4135.101231 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 351.133 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.02355 -42.39889 -41.10785 -39.80315 -37.42684 -36.04580 -33.85408 -32.79712 -32.39406 -30.32277 -29.50723 -28.37464 -28.32339 -27.12255 -26.56380 -25.45671 -23.53185 -22.61728 -21.82747 -21.05171 -19.20938 -18.54888 -18.37236 -18.11646 -17.60239 -16.97678 -16.69134 -16.50395 -16.35906 -15.94404 -15.75807 -15.64154 -15.11774 -14.74710 -14.71769 -14.27834 -14.18427 -14.14959 -14.02739 -13.88822 -13.82730 -13.80650 -13.41778 -13.34518 -13.20754 -13.13314 -13.01260 -12.71910 -12.40018 -12.22211 -11.98637 -11.78204 -11.73544 -11.39426 -11.11484 -10.84310 -10.79599 -10.36732 -10.30796 -10.04000 -9.81468 -8.64851 -0.55273 -0.03641 0.77126 1.20577 1.33029 1.37609 1.51609 1.58087 1.66929 1.87854 1.93038 1.98017 1.99488 2.17248 2.50313 2.58466 3.02555 3.33060 3.37722 3.55147 3.74779 3.79272 3.95212 4.04842 4.14526 4.25401 4.36844 4.52483 4.61940 4.68368 4.70167 4.72282 4.75432 4.77582 4.82655 4.84375 4.85584 4.88024 4.89782 4.90599 5.04042 5.14684 5.51581 5.56467 5.61650 5.66539 5.73466 6.06600 6.33531 6.66662 6.88238 7.04834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.477 4.477 2 Si 1.094 2.906 3 C -0.454 4.454 4 C -0.457 4.457 5 C -0.191 4.191 6 N -0.338 5.338 7 C 0.038 3.962 8 C -0.027 4.027 9 N -0.617 5.617 10 C 0.553 3.447 11 O -0.556 6.556 12 C -0.181 4.181 13 C -0.020 4.020 14 C -0.097 4.097 15 C -0.074 4.074 16 O -0.560 6.560 17 Si 0.964 3.036 18 H -0.255 1.255 19 H -0.255 1.255 20 H -0.269 1.269 21 C -0.067 4.067 22 C -0.153 4.153 23 C 0.135 3.865 24 F -0.135 7.135 25 C 0.021 3.979 26 N -0.318 5.318 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.044 0.956 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.135 0.865 38 H 0.225 0.775 39 H 0.427 0.573 40 H 0.170 0.830 41 H 0.112 0.888 42 H 0.402 0.598 43 H 0.152 0.848 44 H 0.165 0.835 45 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.848 0.157 -7.671 13.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.580 4.580 2 Si 1.283 2.717 3 C -0.563 4.563 4 C -0.565 4.565 5 C -0.354 4.354 6 N -0.121 5.121 7 C -0.111 4.111 8 C -0.131 4.131 9 N -0.264 5.264 10 C 0.342 3.658 11 O -0.435 6.435 12 C -0.185 4.185 13 C -0.038 4.038 14 C -0.097 4.097 15 C -0.185 4.185 16 O -0.369 6.369 17 Si 0.789 3.211 18 H -0.179 1.179 19 H -0.179 1.179 20 H -0.194 1.194 21 C -0.085 4.085 22 C -0.172 4.172 23 C 0.115 3.885 24 F -0.113 7.113 25 C -0.164 4.164 26 N -0.142 5.142 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.064 0.936 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.121 0.879 37 H 0.153 0.847 38 H 0.242 0.758 39 H 0.267 0.733 40 H 0.187 0.813 41 H 0.130 0.870 42 H 0.253 0.747 43 H 0.169 0.831 44 H 0.182 0.818 45 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 9.107 0.748 -6.504 11.216 hybrid contribution 0.102 -0.750 -0.115 0.766 sum 9.209 -0.003 -6.620 11.341 Atomic orbital electron populations 1.26535 1.24609 1.02967 1.03931 0.78272 0.63872 0.65932 0.63582 1.26133 1.07369 1.17801 1.04996 1.26202 1.07543 1.07641 1.15131 1.27434 1.06765 0.81639 1.19564 1.48313 1.14558 1.07764 1.41426 1.22565 1.00732 0.84940 1.02861 1.17766 0.98677 0.85727 1.10922 1.42382 1.23985 1.03738 1.56326 1.18265 0.83091 0.85089 0.79374 1.90743 1.27347 1.83729 1.41706 1.19900 0.98783 0.92032 1.07828 1.21269 0.92784 0.97932 0.91847 1.19557 0.96266 0.93112 1.00754 1.24630 0.85113 1.12658 0.96049 1.86457 1.16815 1.91310 1.42359 0.85468 0.81241 0.75160 0.79197 1.17948 1.17944 1.19383 1.21369 0.92527 1.00045 0.94553 1.21300 0.99969 0.94810 1.01108 1.18118 0.82616 0.94159 0.93638 1.91564 1.47568 1.94850 1.77322 1.24277 0.99814 0.92088 1.00191 1.77394 1.03362 1.12223 1.21219 0.91988 0.91245 0.93628 0.89521 0.90708 0.91009 0.92059 0.90952 0.89076 0.87949 0.84725 0.75830 0.73263 0.81258 0.87006 0.74711 0.83095 0.81788 0.80367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 -0.93 8.65 113.37 0.98 0.05 16 2 Si 1.09 -7.46 12.79 68.60 0.88 -6.58 16 3 C -0.45 3.37 8.65 113.37 0.98 4.35 16 4 C -0.46 3.04 8.65 113.37 0.98 4.02 16 5 C -0.19 0.93 5.59 127.77 0.71 1.64 16 6 N -0.34 -0.92 3.01 -182.90 -0.55 -1.47 16 7 C 0.04 -0.03 11.44 83.50 0.96 0.92 16 8 C -0.03 -0.15 6.90 37.63 0.26 0.10 16 9 N -0.62 -1.27 5.42 -306.77 -1.66 -2.93 16 10 C 0.55 4.91 7.74 86.74 0.67 5.59 16 11 O -0.56 -9.89 12.49 -4.03 -0.05 -9.94 16 12 C -0.18 -0.83 5.88 -20.05 -0.12 -0.95 16 13 C -0.02 0.06 9.17 22.53 0.21 0.26 16 14 C -0.10 0.33 5.38 -19.90 -0.11 0.22 16 15 C -0.07 0.63 2.79 71.24 0.20 0.82 16 16 O -0.56 4.21 12.81 -148.98 -1.91 2.30 16 17 Si 0.96 -6.56 25.13 68.60 1.72 -4.84 16 18 H -0.26 1.36 7.11 99.48 0.71 2.07 16 19 H -0.26 1.60 7.11 99.48 0.71 2.31 16 20 H -0.27 0.78 7.04 99.48 0.70 1.48 16 21 C -0.07 0.15 8.66 22.31 0.19 0.34 16 22 C -0.15 -0.15 10.01 22.28 0.22 0.07 16 23 C 0.14 0.96 7.29 22.67 0.17 1.13 16 24 F -0.13 -1.85 15.55 44.97 0.70 -1.15 16 25 C 0.02 0.28 10.83 85.33 0.92 1.20 16 26 N -0.32 -3.76 12.56 -56.77 -0.71 -4.47 16 27 H 0.06 0.19 7.96 -2.38 -0.02 0.17 16 28 H 0.07 0.07 7.96 -2.39 -0.02 0.05 16 29 H 0.04 0.33 7.96 -2.39 -0.02 0.31 16 30 H 0.09 -0.84 7.96 -2.39 -0.02 -0.86 16 31 H 0.07 -0.48 7.96 -2.39 -0.02 -0.50 16 32 H 0.07 -0.47 7.96 -2.39 -0.02 -0.49 16 33 H 0.06 -0.25 7.96 -2.39 -0.02 -0.26 16 34 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 35 H 0.09 -0.94 7.96 -2.38 -0.02 -0.96 16 36 H 0.10 -0.37 7.96 -2.39 -0.02 -0.39 16 37 H 0.13 -1.57 7.96 -2.39 -0.02 -1.59 16 38 H 0.23 -2.58 8.06 -2.91 -0.02 -2.60 16 39 H 0.43 -2.97 6.86 -92.71 -0.64 -3.61 16 40 H 0.17 -1.68 6.40 -2.91 -0.02 -1.70 16 41 H 0.11 -1.57 7.96 -2.39 -0.02 -1.59 16 42 H 0.40 -6.42 8.74 -74.06 -0.65 -7.06 16 43 H 0.15 -0.88 4.84 -2.91 -0.01 -0.90 16 44 H 0.16 -0.49 8.06 -2.91 -0.02 -0.51 16 45 H 0.18 3.13 5.91 -2.91 -0.02 3.12 16 Total: 0.00 -29.38 383.09 6.15 -23.23 By element: Atomic # 1 Polarization: -14.45 SS G_CDS: 0.51 Total: -13.94 kcal Atomic # 6 Polarization: 12.56 SS G_CDS: 7.23 Total: 19.79 kcal Atomic # 7 Polarization: -5.94 SS G_CDS: -2.93 Total: -8.87 kcal Atomic # 8 Polarization: -5.68 SS G_CDS: -1.96 Total: -7.64 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.70 Total: -1.15 kcal Atomic # 14 Polarization: -14.02 SS G_CDS: 2.60 Total: -11.42 kcal Total: -29.38 6.15 -23.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_12335834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.935 kcal (2) G-P(sol) polarization free energy of solvation -29.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds