Wall clock time and date at job start Sun Mar 7 2021 09:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86303 * 109.47161 * 2 1 4 4 C 1.86299 * 109.47217 * 119.99499 * 2 1 3 5 5 C 1.86293 * 109.47364 * 239.99588 * 2 1 3 6 6 N 1.46505 * 109.46974 * 60.00146 * 5 2 1 7 7 C 1.35809 * 126.05363 * 90.00371 * 6 5 2 8 8 C 1.35753 * 107.56243 * 179.97438 * 7 6 5 9 9 N 1.40770 * 126.08077 * 179.97438 * 8 7 6 10 10 C 1.34779 * 119.99880 * 179.97438 * 9 8 7 11 11 O 1.21308 * 119.99988 * 359.97438 * 10 9 8 12 12 C 1.50700 * 119.99724 * 180.02562 * 10 9 8 13 13 C 1.50697 * 109.46896 * 180.02562 * 12 10 9 14 14 C 1.38242 * 119.99733 * 269.72688 * 13 12 10 15 15 C 1.38237 * 119.99943 * 179.76986 * 14 13 12 16 16 C 1.38230 * 119.99907 * 0.50035 * 15 14 13 17 17 C 1.50698 * 120.00038 * 179.72626 * 16 15 14 18 18 O 1.42894 * 109.47395 * 245.02173 * 17 16 15 19 19 Si 1.86298 * 109.47146 * 5.02307 * 17 16 15 20 20 H 1.48504 * 109.47430 * 59.99685 * 19 17 16 21 21 H 1.48496 * 109.47368 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47296 * 300.00134 * 19 17 16 23 23 C 1.38236 * 120.00212 * 359.75155 * 16 15 14 24 24 C 1.38229 * 119.99859 * 359.97438 * 23 16 15 25 25 C 1.40255 * 107.84084 * 359.97438 * 8 7 6 26 26 N 1.30830 * 108.33140 * 359.75546 * 25 8 7 27 27 H 1.09001 * 109.46570 * 60.00396 * 1 2 3 28 28 H 1.09001 * 109.47076 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47204 * 300.00331 * 1 2 3 30 30 H 1.09000 * 109.47332 * 59.99747 * 3 2 1 31 31 H 1.09002 * 109.47176 * 179.97438 * 3 2 1 32 32 H 1.09004 * 109.46801 * 299.99758 * 3 2 1 33 33 H 1.09001 * 109.47058 * 60.00032 * 4 2 1 34 34 H 1.09002 * 109.47782 * 180.02562 * 4 2 1 35 35 H 1.09000 * 109.47172 * 300.00189 * 4 2 1 36 36 H 1.09002 * 109.47236 * 180.02562 * 5 2 1 37 37 H 1.08998 * 109.47688 * 299.99834 * 5 2 1 38 38 H 1.08002 * 126.22167 * 359.93915 * 7 6 5 39 39 H 0.96996 * 120.00001 * 0.02562 * 9 8 7 40 40 H 1.09003 * 109.47022 * 299.99777 * 12 10 9 41 41 H 1.08999 * 109.47369 * 60.00024 * 12 10 9 42 42 H 1.07995 * 119.99855 * 359.97438 * 14 13 12 43 43 H 1.08004 * 119.99789 * 180.22796 * 15 14 13 44 44 H 1.09006 * 109.47246 * 125.01878 * 17 16 15 45 45 H 0.96705 * 114.00160 * 59.99841 * 18 17 16 46 46 H 1.07999 * 120.00176 * 179.97438 * 23 16 15 47 47 H 1.08005 * 120.00185 * 179.97438 * 24 23 16 48 48 H 1.08000 * 125.83430 * 179.97438 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8781 1.5212 5 6 2.4841 -0.8783 -1.5210 6 7 1.9957 -0.1877 -2.7172 7 6 2.6259 0.8229 -3.3699 8 6 1.8455 1.1808 -4.4215 9 7 2.1293 2.1928 -5.3579 10 6 1.2637 2.4462 -6.3594 11 8 0.2402 1.8019 -6.4541 12 6 1.5678 3.5292 -7.3623 13 6 0.4497 3.6096 -8.3694 14 6 0.5044 2.8525 -9.5247 15 6 -0.5236 2.9226 -10.4463 16 6 -1.6012 3.7576 -10.2175 17 6 -2.7188 3.8387 -11.2251 18 8 -2.7585 5.1515 -11.7879 19 14 -2.4269 2.5917 -12.5781 20 1 -2.3856 1.2272 -11.9933 21 1 -3.5285 2.6711 -13.5707 22 1 -1.1340 2.8821 -13.2484 23 6 -1.6534 4.5186 -9.0647 24 6 -0.6282 4.4443 -8.1405 25 6 0.7061 0.3630 -4.4090 26 7 0.7996 -0.4574 -3.3942 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 2.1207 2.2704 0.8899 31 1 3.5740 1.7565 0.0005 32 1 2.1207 2.2703 -0.8901 33 1 2.1207 -1.9058 1.5213 34 1 3.5740 -0.8777 1.5215 35 1 2.1207 -0.3642 2.4111 36 1 3.5741 -0.8787 -1.5207 37 1 2.1208 -1.9060 -1.5210 38 1 3.5750 1.2625 -3.1010 39 1 2.9482 2.7072 -5.2829 40 1 1.6619 4.4853 -6.8472 41 1 2.5022 3.2987 -7.8739 42 1 1.3485 2.2037 -9.7057 43 1 -0.4826 2.3283 -11.3472 44 1 -3.6679 3.6254 -10.7331 45 1 -1.9450 5.4093 -12.2428 46 1 -2.4951 5.1713 -8.8862 47 1 -0.6688 5.0392 -7.2399 48 1 -0.1076 0.4015 -5.1181 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608520_12335836.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:50:47 Heat of formation + Delta-G solvation = -3.016823 kcal Electronic energy + Delta-G solvation = -27191.772367 eV Core-core repulsion = 23371.938292 eV Total energy + Delta-G solvation = -3819.834075 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.158 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.23583 -40.96795 -39.94392 -37.61208 -35.76593 -34.15385 -33.51124 -31.89891 -30.73473 -29.75668 -29.41694 -28.57570 -28.44277 -26.97912 -25.62860 -23.79936 -23.04215 -22.22774 -21.64250 -20.84685 -18.56355 -18.35020 -17.84866 -17.14777 -16.92653 -16.57450 -16.35766 -16.23713 -16.01558 -15.46378 -15.07068 -14.99858 -14.93042 -14.51466 -14.35944 -14.31485 -14.19796 -14.11301 -13.94567 -13.76839 -13.53497 -13.41824 -13.26552 -13.22032 -13.20253 -13.16993 -12.87321 -12.23427 -12.11732 -12.09696 -11.92322 -11.62266 -11.49929 -11.31397 -11.04307 -10.93653 -10.80790 -10.36289 -9.98872 -9.80655 -9.58129 -8.54090 0.28079 0.51936 0.77623 1.20464 1.29657 1.43097 1.47046 1.57445 1.57895 1.68226 1.86998 1.96210 2.23018 2.24069 2.41371 2.83184 3.48887 3.59105 3.70299 3.77583 3.81800 3.88762 3.96569 4.05663 4.24338 4.32154 4.37541 4.48729 4.49793 4.55759 4.58056 4.60821 4.62404 4.63030 4.71877 4.73694 4.76929 4.77605 4.80654 5.03884 5.12127 5.22086 5.32298 5.39383 5.42728 5.57392 5.59775 5.62641 5.96039 6.05085 6.07152 6.43134 6.58716 6.85062 7.22397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.447 4.447 2 Si 1.020 2.980 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.169 4.169 6 N -0.344 5.344 7 C 0.012 3.988 8 C -0.004 4.004 9 N -0.645 5.645 10 C 0.514 3.486 11 O -0.516 6.516 12 C -0.099 4.099 13 C -0.064 4.064 14 C -0.098 4.098 15 C -0.124 4.124 16 C -0.118 4.118 17 C -0.081 4.081 18 O -0.538 6.538 19 Si 0.949 3.051 20 H -0.250 1.250 21 H -0.255 1.255 22 H -0.252 1.252 23 C -0.088 4.088 24 C -0.102 4.102 25 C 0.046 3.954 26 N -0.283 5.283 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.175 0.825 39 H 0.410 0.590 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.123 0.877 43 H 0.120 0.880 44 H 0.118 0.882 45 H 0.376 0.624 46 H 0.128 0.872 47 H 0.123 0.877 48 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.588 2.397 2.441 7.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.555 4.555 2 Si 1.214 2.786 3 C -0.557 4.557 4 C -0.558 4.558 5 C -0.335 4.335 6 N -0.127 5.127 7 C -0.136 4.136 8 C -0.108 4.108 9 N -0.291 5.291 10 C 0.302 3.698 11 O -0.390 6.390 12 C -0.139 4.139 13 C -0.065 4.065 14 C -0.116 4.116 15 C -0.142 4.142 16 C -0.118 4.118 17 C -0.191 4.191 18 O -0.343 6.343 19 Si 0.772 3.228 20 H -0.173 1.173 21 H -0.179 1.179 22 H -0.176 1.176 23 C -0.106 4.106 24 C -0.120 4.120 25 C -0.140 4.140 26 N -0.105 5.105 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.116 0.884 37 H 0.123 0.877 38 H 0.192 0.808 39 H 0.245 0.755 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.141 0.859 43 H 0.138 0.862 44 H 0.136 0.864 45 H 0.223 0.777 46 H 0.146 0.854 47 H 0.141 0.859 48 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 4.897 0.284 2.635 5.568 hybrid contribution 1.539 1.125 -0.240 1.921 sum 6.435 1.409 2.395 7.010 Atomic orbital electron populations 1.26072 1.20075 1.04817 1.04492 0.79363 0.68087 0.67074 0.64054 1.26126 1.06107 1.18638 1.04871 1.26099 1.06369 1.08337 1.15008 1.26952 1.04400 1.05142 0.96961 1.47974 1.15818 1.26851 1.22085 1.21865 1.00204 0.95899 0.95630 1.17679 0.98476 0.98786 0.95904 1.42820 1.24158 1.35381 1.26749 1.20616 0.83262 0.84720 0.81251 1.90646 1.25677 1.49444 1.73219 1.20642 0.99150 0.98866 0.95224 1.19228 0.95375 0.97333 0.94535 1.20888 0.98739 0.98357 0.93636 1.20984 0.94313 0.99150 0.99703 1.20284 0.96253 0.98217 0.97083 1.24974 1.00460 0.92914 1.00788 1.86520 1.41769 1.31270 1.74787 0.85686 0.80719 0.78267 0.78085 1.17343 1.17891 1.17619 1.20959 0.98525 0.98264 0.92847 1.21027 0.93406 0.98576 0.99020 1.24473 0.98994 0.93289 0.97222 1.77460 1.01401 1.23155 1.08532 0.91010 0.91038 0.91230 0.90753 0.91135 0.91123 0.90862 0.90982 0.90576 0.88360 0.87738 0.80768 0.75542 0.87448 0.87487 0.85859 0.86247 0.86442 0.77734 0.85445 0.85890 0.77972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.05 8.65 101.05 0.87 0.92 16 2 Si 1.02 -3.10 12.79 -169.99 -2.17 -5.27 16 3 C -0.45 1.07 8.65 101.05 0.87 1.94 16 4 C -0.45 1.30 8.65 101.05 0.87 2.17 16 5 C -0.17 0.31 5.59 59.85 0.33 0.64 16 6 N -0.34 -0.42 3.01 -9.17 -0.03 -0.45 16 7 C 0.01 0.00 11.44 -16.68 -0.19 -0.19 16 8 C 0.00 -0.01 6.90 -83.88 -0.58 -0.59 16 9 N -0.65 0.55 5.47 -10.03 -0.05 0.49 16 10 C 0.51 0.41 7.79 -10.98 -0.09 0.33 16 11 O -0.52 -2.50 13.19 5.53 0.07 -2.43 16 12 C -0.10 0.21 5.83 -29.04 -0.17 0.04 16 13 C -0.06 -0.04 4.37 -104.62 -0.46 -0.50 16 14 C -0.10 -0.10 9.70 -39.58 -0.38 -0.48 16 15 C -0.12 -0.17 8.67 -39.58 -0.34 -0.51 16 16 C -0.12 -0.17 5.35 -104.63 -0.56 -0.73 16 17 C -0.08 -0.04 2.80 36.00 0.10 0.06 16 18 O -0.54 -0.48 12.83 -35.23 -0.45 -0.93 16 19 Si 0.95 0.29 25.14 -169.99 -4.27 -3.98 16 20 H -0.25 -0.33 7.11 56.52 0.40 0.07 16 21 H -0.25 -0.42 7.11 56.52 0.40 -0.02 16 22 H -0.25 -0.04 7.04 56.52 0.40 0.36 16 23 C -0.09 -0.13 9.69 -39.59 -0.38 -0.52 16 24 C -0.10 -0.10 9.70 -39.59 -0.38 -0.49 16 25 C 0.05 0.20 10.84 -17.22 -0.19 0.02 16 26 N -0.28 -1.25 12.56 30.70 0.39 -0.86 16 27 H 0.07 0.14 7.96 -51.93 -0.41 -0.28 16 28 H 0.07 0.01 7.96 -51.93 -0.41 -0.40 16 29 H 0.07 -0.04 7.96 -51.93 -0.41 -0.45 16 30 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 31 H 0.07 -0.23 7.96 -51.93 -0.41 -0.64 16 32 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 33 H 0.07 -0.20 7.96 -51.93 -0.41 -0.61 16 34 H 0.07 -0.24 7.96 -51.93 -0.41 -0.66 16 35 H 0.08 -0.19 7.96 -51.93 -0.41 -0.61 16 36 H 0.10 -0.39 7.96 -51.93 -0.41 -0.81 16 37 H 0.10 -0.17 7.96 -51.93 -0.41 -0.58 16 38 H 0.18 -0.66 8.06 -52.49 -0.42 -1.08 16 39 H 0.41 -1.87 8.83 -40.82 -0.36 -2.23 16 40 H 0.11 -0.47 8.09 -51.93 -0.42 -0.89 16 41 H 0.11 -0.47 8.08 -51.93 -0.42 -0.89 16 42 H 0.12 -0.08 8.06 -52.49 -0.42 -0.50 16 43 H 0.12 0.02 4.87 -52.48 -0.26 -0.23 16 44 H 0.12 0.00 7.96 -51.93 -0.41 -0.42 16 45 H 0.38 -0.90 8.70 45.56 0.40 -0.50 16 46 H 0.13 0.09 8.06 -52.49 -0.42 -0.33 16 47 H 0.12 -0.07 8.06 -52.48 -0.42 -0.49 16 48 H 0.20 1.09 5.92 -52.49 -0.31 0.78 16 LS Contribution 403.16 15.07 6.08 6.08 Total: 0.00 -9.80 403.16 -7.93 -17.73 By element: Atomic # 1 Polarization: -5.66 SS G_CDS: -6.82 Total: -12.49 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -0.66 Total: 2.11 kcal Atomic # 7 Polarization: -1.12 SS G_CDS: 0.30 Total: -0.82 kcal Atomic # 8 Polarization: -2.98 SS G_CDS: -0.38 Total: -3.36 kcal Atomic # 14 Polarization: -2.80 SS G_CDS: -6.45 Total: -9.25 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -9.80 -7.93 -17.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_12335836.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.714 kcal (2) G-P(sol) polarization free energy of solvation -9.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds