Wall clock time and date at job start Sun Mar 7 2021 09:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86303 * 109.47161 * 2 1 4 4 C 1.86299 * 109.47217 * 119.99499 * 2 1 3 5 5 C 1.86293 * 109.47364 * 239.99588 * 2 1 3 6 6 N 1.46505 * 109.46974 * 60.00146 * 5 2 1 7 7 C 1.35809 * 126.05363 * 90.00371 * 6 5 2 8 8 C 1.35753 * 107.56243 * 179.97438 * 7 6 5 9 9 N 1.40770 * 126.08077 * 179.97438 * 8 7 6 10 10 C 1.34779 * 119.99880 * 179.97438 * 9 8 7 11 11 O 1.21308 * 119.99988 * 359.97438 * 10 9 8 12 12 C 1.50700 * 119.99724 * 180.02562 * 10 9 8 13 13 C 1.50697 * 109.46896 * 180.02562 * 12 10 9 14 14 C 1.38242 * 119.99733 * 269.72688 * 13 12 10 15 15 C 1.38237 * 119.99943 * 179.76986 * 14 13 12 16 16 C 1.38230 * 119.99907 * 0.50035 * 15 14 13 17 17 C 1.50698 * 120.00038 * 179.72626 * 16 15 14 18 18 O 1.42894 * 109.47395 * 245.02173 * 17 16 15 19 19 Si 1.86298 * 109.47146 * 5.02307 * 17 16 15 20 20 H 1.48504 * 109.47430 * 59.99685 * 19 17 16 21 21 H 1.48496 * 109.47368 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47296 * 300.00134 * 19 17 16 23 23 C 1.38236 * 120.00212 * 359.75155 * 16 15 14 24 24 C 1.38229 * 119.99859 * 359.97438 * 23 16 15 25 25 C 1.40255 * 107.84084 * 359.97438 * 8 7 6 26 26 N 1.30830 * 108.33140 * 359.75546 * 25 8 7 27 27 H 1.09001 * 109.46570 * 60.00396 * 1 2 3 28 28 H 1.09001 * 109.47076 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47204 * 300.00331 * 1 2 3 30 30 H 1.09000 * 109.47332 * 59.99747 * 3 2 1 31 31 H 1.09002 * 109.47176 * 179.97438 * 3 2 1 32 32 H 1.09004 * 109.46801 * 299.99758 * 3 2 1 33 33 H 1.09001 * 109.47058 * 60.00032 * 4 2 1 34 34 H 1.09002 * 109.47782 * 180.02562 * 4 2 1 35 35 H 1.09000 * 109.47172 * 300.00189 * 4 2 1 36 36 H 1.09002 * 109.47236 * 180.02562 * 5 2 1 37 37 H 1.08998 * 109.47688 * 299.99834 * 5 2 1 38 38 H 1.08002 * 126.22167 * 359.93915 * 7 6 5 39 39 H 0.96996 * 120.00001 * 0.02562 * 9 8 7 40 40 H 1.09003 * 109.47022 * 299.99777 * 12 10 9 41 41 H 1.08999 * 109.47369 * 60.00024 * 12 10 9 42 42 H 1.07995 * 119.99855 * 359.97438 * 14 13 12 43 43 H 1.08004 * 119.99789 * 180.22796 * 15 14 13 44 44 H 1.09006 * 109.47246 * 125.01878 * 17 16 15 45 45 H 0.96705 * 114.00160 * 59.99841 * 18 17 16 46 46 H 1.07999 * 120.00176 * 179.97438 * 23 16 15 47 47 H 1.08005 * 120.00185 * 179.97438 * 24 23 16 48 48 H 1.08000 * 125.83430 * 179.97438 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8781 1.5212 5 6 2.4841 -0.8783 -1.5210 6 7 1.9957 -0.1877 -2.7172 7 6 2.6259 0.8229 -3.3699 8 6 1.8455 1.1808 -4.4215 9 7 2.1293 2.1928 -5.3579 10 6 1.2637 2.4462 -6.3594 11 8 0.2402 1.8019 -6.4541 12 6 1.5678 3.5292 -7.3623 13 6 0.4497 3.6096 -8.3694 14 6 0.5044 2.8525 -9.5247 15 6 -0.5236 2.9226 -10.4463 16 6 -1.6012 3.7576 -10.2175 17 6 -2.7188 3.8387 -11.2251 18 8 -2.7585 5.1515 -11.7879 19 14 -2.4269 2.5917 -12.5781 20 1 -2.3856 1.2272 -11.9933 21 1 -3.5285 2.6711 -13.5707 22 1 -1.1340 2.8821 -13.2484 23 6 -1.6534 4.5186 -9.0647 24 6 -0.6282 4.4443 -8.1405 25 6 0.7061 0.3630 -4.4090 26 7 0.7996 -0.4574 -3.3942 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 2.1207 2.2704 0.8899 31 1 3.5740 1.7565 0.0005 32 1 2.1207 2.2703 -0.8901 33 1 2.1207 -1.9058 1.5213 34 1 3.5740 -0.8777 1.5215 35 1 2.1207 -0.3642 2.4111 36 1 3.5741 -0.8787 -1.5207 37 1 2.1208 -1.9060 -1.5210 38 1 3.5750 1.2625 -3.1010 39 1 2.9482 2.7072 -5.2829 40 1 1.6619 4.4853 -6.8472 41 1 2.5022 3.2987 -7.8739 42 1 1.3485 2.2037 -9.7057 43 1 -0.4826 2.3283 -11.3472 44 1 -3.6679 3.6254 -10.7331 45 1 -1.9450 5.4093 -12.2428 46 1 -2.4951 5.1713 -8.8862 47 1 -0.6688 5.0392 -7.2399 48 1 -0.1076 0.4015 -5.1181 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_12335836.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:50:46 Heat of formation + Delta-G solvation = -0.301326 kcal Electronic energy + Delta-G solvation = -27191.654614 eV Core-core repulsion = 23371.938292 eV Total energy + Delta-G solvation = -3819.716322 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.158 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.30260 -40.99157 -39.99089 -37.64521 -35.81198 -34.15091 -33.54422 -31.93266 -30.77636 -29.62742 -29.33457 -28.38283 -28.32564 -26.95744 -25.64389 -23.83737 -23.10771 -22.24370 -21.68087 -20.89056 -18.58407 -18.36917 -17.82396 -17.16538 -16.92962 -16.60553 -16.36211 -16.25949 -16.03863 -15.50454 -15.13295 -15.05846 -14.95143 -14.52355 -14.22755 -14.18651 -14.15520 -14.02666 -13.83272 -13.78769 -13.41477 -13.24780 -13.21287 -13.14091 -13.08431 -13.02593 -12.84475 -12.24528 -12.20086 -12.09681 -11.96442 -11.73897 -11.54483 -11.33655 -10.90181 -10.85093 -10.80368 -10.40791 -10.01062 -9.86270 -9.61151 -8.57621 0.24510 0.46234 0.78289 1.15910 1.36459 1.41404 1.42047 1.50444 1.68098 1.87666 1.88287 2.05081 2.17173 2.28039 2.57760 2.81285 3.52329 3.64686 3.76429 3.80641 3.90702 3.94839 4.05746 4.10984 4.30746 4.38201 4.46743 4.58978 4.62955 4.65503 4.69291 4.70572 4.73948 4.74618 4.75642 4.83077 4.84221 4.87001 4.88572 5.03883 5.09942 5.19022 5.38660 5.50592 5.55060 5.60194 5.60379 5.65616 5.82101 6.03302 6.12141 6.53846 6.70027 6.73871 7.29409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.476 4.476 2 Si 1.096 2.904 3 C -0.457 4.457 4 C -0.455 4.455 5 C -0.190 4.190 6 N -0.341 5.341 7 C 0.029 3.971 8 C -0.022 4.022 9 N -0.630 5.630 10 C 0.509 3.491 11 O -0.565 6.565 12 C -0.091 4.091 13 C -0.071 4.071 14 C -0.110 4.110 15 C -0.138 4.138 16 C -0.127 4.127 17 C -0.079 4.079 18 O -0.551 6.551 19 Si 0.983 3.017 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.246 1.246 23 C -0.104 4.104 24 C -0.113 4.113 25 C 0.020 3.980 26 N -0.322 5.322 27 H 0.045 0.955 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.132 0.868 37 H 0.100 0.900 38 H 0.221 0.779 39 H 0.430 0.570 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.127 0.873 44 H 0.118 0.882 45 H 0.389 0.611 46 H 0.129 0.871 47 H 0.135 0.865 48 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.892 3.213 3.488 10.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.580 4.580 2 Si 1.285 2.715 3 C -0.565 4.565 4 C -0.564 4.564 5 C -0.353 4.353 6 N -0.124 5.124 7 C -0.120 4.120 8 C -0.126 4.126 9 N -0.277 5.277 10 C 0.298 3.702 11 O -0.443 6.443 12 C -0.130 4.130 13 C -0.072 4.072 14 C -0.128 4.128 15 C -0.156 4.156 16 C -0.128 4.128 17 C -0.190 4.190 18 O -0.359 6.359 19 Si 0.807 3.193 20 H -0.191 1.191 21 H -0.199 1.199 22 H -0.169 1.169 23 C -0.122 4.122 24 C -0.131 4.131 25 C -0.165 4.165 26 N -0.147 5.147 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.150 0.850 37 H 0.119 0.881 38 H 0.237 0.763 39 H 0.268 0.732 40 H 0.153 0.847 41 H 0.154 0.846 42 H 0.156 0.844 43 H 0.144 0.856 44 H 0.136 0.864 45 H 0.238 0.762 46 H 0.147 0.853 47 H 0.153 0.847 48 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 8.208 1.122 3.679 9.065 hybrid contribution 0.485 0.833 -0.487 1.080 sum 8.693 1.955 3.193 9.465 Atomic orbital electron populations 1.26523 1.24553 1.03749 1.03135 0.78236 0.63881 0.66314 0.63054 1.26207 1.07443 1.18536 1.04320 1.26144 1.07335 1.08202 1.14686 1.27392 1.06595 1.05068 0.96273 1.48269 1.14842 1.26978 1.22280 1.22552 1.00856 0.94538 0.94054 1.17824 0.98065 0.99485 0.97256 1.42703 1.24623 1.34699 1.25693 1.21176 0.82652 0.84727 0.81649 1.90647 1.27828 1.51343 1.74462 1.20709 0.99129 0.99016 0.94127 1.19547 0.96040 0.96628 0.94941 1.21191 0.99170 0.98597 0.93841 1.21179 0.94629 0.99438 1.00331 1.20401 0.96587 0.98442 0.97352 1.24989 1.00325 0.92901 1.00774 1.86480 1.42962 1.31403 1.75014 0.85215 0.80052 0.76970 0.77014 1.19126 1.19944 1.16944 1.21119 0.99017 0.98719 0.93312 1.21283 0.93496 0.98994 0.99313 1.24285 0.99906 0.94867 0.97455 1.77377 1.03572 1.24296 1.09445 0.93609 0.92000 0.91247 0.90990 0.89233 0.92061 0.91006 0.89586 0.90722 0.85002 0.88114 0.76301 0.73154 0.84659 0.84598 0.84422 0.85591 0.86442 0.76205 0.85332 0.84697 0.80319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 -0.77 8.65 113.37 0.98 0.21 16 2 Si 1.10 -7.63 12.79 68.60 0.88 -6.76 16 3 C -0.46 3.03 8.65 113.37 0.98 4.01 16 4 C -0.45 3.39 8.65 113.37 0.98 4.37 16 5 C -0.19 0.94 5.59 127.77 0.71 1.66 16 6 N -0.34 -0.73 3.01 -182.93 -0.55 -1.28 16 7 C 0.03 -0.05 11.44 83.50 0.96 0.91 16 8 C -0.02 -0.08 6.90 37.62 0.26 0.18 16 9 N -0.63 1.58 5.47 -304.03 -1.66 -0.08 16 10 C 0.51 0.87 7.79 87.66 0.68 1.55 16 11 O -0.56 -6.68 13.19 -3.12 -0.04 -6.72 16 12 C -0.09 0.51 5.83 29.10 0.17 0.68 16 13 C -0.07 -0.09 4.37 -19.86 -0.09 -0.18 16 14 C -0.11 -0.27 9.70 22.27 0.22 -0.05 16 15 C -0.14 -0.50 8.67 22.27 0.19 -0.31 16 16 C -0.13 -0.52 5.35 -19.87 -0.11 -0.63 16 17 C -0.08 -0.18 2.80 71.24 0.20 0.02 16 18 O -0.55 -1.41 12.83 -148.98 -1.91 -3.33 16 19 Si 0.98 1.61 25.14 68.60 1.72 3.34 16 20 H -0.27 -1.12 7.11 99.48 0.71 -0.41 16 21 H -0.27 -1.27 7.11 99.48 0.71 -0.56 16 22 H -0.25 -0.10 7.04 99.48 0.70 0.60 16 23 C -0.10 -0.45 9.69 22.27 0.22 -0.23 16 24 C -0.11 -0.31 9.70 22.27 0.22 -0.09 16 25 C 0.02 0.22 10.84 85.33 0.92 1.15 16 26 N -0.32 -3.51 12.56 -56.77 -0.71 -4.23 16 27 H 0.04 0.31 7.96 -2.39 -0.02 0.29 16 28 H 0.06 0.17 7.96 -2.39 -0.02 0.16 16 29 H 0.07 0.05 7.96 -2.39 -0.02 0.03 16 30 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 31 H 0.09 -0.90 7.96 -2.39 -0.02 -0.92 16 32 H 0.06 -0.25 7.96 -2.38 -0.02 -0.27 16 33 H 0.07 -0.48 7.96 -2.39 -0.02 -0.49 16 34 H 0.09 -0.83 7.96 -2.39 -0.02 -0.85 16 35 H 0.07 -0.48 7.96 -2.39 -0.02 -0.50 16 36 H 0.13 -1.52 7.96 -2.39 -0.02 -1.54 16 37 H 0.10 -0.37 7.96 -2.39 -0.02 -0.39 16 38 H 0.22 -2.58 8.06 -2.91 -0.02 -2.60 16 39 H 0.43 -4.93 8.83 -92.71 -0.82 -5.74 16 40 H 0.14 -1.51 8.09 -2.39 -0.02 -1.53 16 41 H 0.14 -1.54 8.08 -2.39 -0.02 -1.56 16 42 H 0.14 -0.20 8.06 -2.91 -0.02 -0.22 16 43 H 0.13 0.16 4.87 -2.91 -0.01 0.14 16 44 H 0.12 0.19 7.96 -2.38 -0.02 0.17 16 45 H 0.39 -1.66 8.70 -74.05 -0.64 -2.31 16 46 H 0.13 0.39 8.06 -2.91 -0.02 0.37 16 47 H 0.14 -0.10 8.06 -2.91 -0.02 -0.12 16 48 H 0.18 2.73 5.92 -2.91 -0.02 2.72 16 Total: 0.00 -27.25 403.16 5.48 -21.77 By element: Atomic # 1 Polarization: -16.22 SS G_CDS: 0.26 Total: -15.96 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: 7.50 Total: 13.24 kcal Atomic # 7 Polarization: -2.66 SS G_CDS: -2.93 Total: -5.59 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: -1.95 Total: -10.05 kcal Atomic # 14 Polarization: -6.02 SS G_CDS: 2.60 Total: -3.42 kcal Total: -27.25 5.48 -21.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_12335836.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.472 kcal (2) G-P(sol) polarization free energy of solvation -27.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds