Wall clock time and date at job start Sun Mar 7 2021 09:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86305 * 109.47022 * 2 1 4 4 C 1.86296 * 109.47187 * 240.00114 * 2 1 3 5 5 C 1.86298 * 109.47113 * 119.99645 * 2 1 3 6 6 N 1.46503 * 109.46967 * 60.00531 * 5 2 1 7 7 C 1.35822 * 126.05581 * 89.99712 * 6 5 2 8 8 C 1.35765 * 107.56025 * 179.97438 * 7 6 5 9 9 N 1.40715 * 126.08516 * 179.97438 * 8 7 6 10 10 C 1.34773 * 120.00437 * 180.02562 * 9 8 7 11 11 O 1.21623 * 119.99874 * 359.97438 * 10 9 8 12 12 C 1.47557 * 120.00104 * 179.72590 * 10 9 8 13 13 C 1.40211 * 119.83709 * 0.26864 * 12 10 9 14 14 C 1.36227 * 120.38098 * 179.97438 * 13 12 10 15 15 C 1.39870 * 119.96118 * 0.02562 * 14 13 12 16 16 C 1.46262 * 133.83896 * 179.97438 * 15 14 13 17 17 C 1.50707 * 126.48574 * 0.04324 * 16 15 14 18 18 O 1.42901 * 109.46672 * 285.00152 * 17 16 15 19 19 Si 1.86294 * 109.47114 * 165.00309 * 17 16 15 20 20 H 1.48497 * 109.47447 * 60.00151 * 19 17 16 21 21 H 1.48503 * 109.46740 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47118 * 299.99456 * 19 17 16 23 23 C 1.34454 * 107.03530 * 180.02562 * 16 15 14 24 24 N 1.36569 * 109.98165 * 359.97438 * 23 16 15 25 25 C 1.37825 * 109.86061 * 0.02562 * 24 23 16 26 26 C 1.38651 * 133.37239 * 180.32411 * 25 24 23 27 27 C 1.40267 * 107.83600 * 0.22777 * 8 7 6 28 28 N 1.30825 * 108.33712 * 359.61610 * 27 8 7 29 29 H 1.08996 * 109.47459 * 300.00271 * 1 2 3 30 30 H 1.09005 * 109.46875 * 60.00568 * 1 2 3 31 31 H 1.08999 * 109.46721 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47406 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.46792 * 300.00014 * 3 2 1 34 34 H 1.08996 * 109.47225 * 59.99585 * 3 2 1 35 35 H 1.08999 * 109.47261 * 299.99308 * 4 2 1 36 36 H 1.08995 * 109.47684 * 60.00031 * 4 2 1 37 37 H 1.09006 * 109.46830 * 179.97438 * 4 2 1 38 38 H 1.08996 * 109.47027 * 300.00349 * 5 2 1 39 39 H 1.09002 * 109.46847 * 180.02562 * 5 2 1 40 40 H 1.08005 * 126.22015 * 0.02562 * 7 6 5 41 41 H 0.97000 * 119.99450 * 359.97438 * 9 8 7 42 42 H 1.08001 * 119.80383 * 0.02562 * 13 12 10 43 43 H 1.08000 * 120.01564 * 180.02562 * 14 13 12 44 44 H 1.09000 * 109.46408 * 44.99876 * 17 16 15 45 45 H 0.96699 * 114.00399 * 299.99883 * 18 17 16 46 46 H 1.07999 * 125.00650 * 180.02562 * 23 16 15 47 47 H 0.97007 * 125.06675 * 180.02562 * 24 23 16 48 48 H 1.08000 * 120.17619 * 359.93942 * 26 25 24 49 49 H 1.08002 * 125.83039 * 179.76675 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4840 -0.8781 1.5212 6 7 1.9957 -2.2594 1.5212 7 6 2.6259 -3.3300 0.9721 8 6 1.8454 -4.4197 1.1880 9 7 2.1290 -5.7362 0.7799 10 6 1.2629 -6.7300 1.0603 11 8 0.2363 -6.4891 1.6664 12 6 1.5574 -8.1095 0.6271 13 6 2.7420 -8.3835 -0.0711 14 6 3.0253 -9.6531 -0.4758 15 6 2.1312 -10.6915 -0.1954 16 6 2.1254 -12.1269 -0.4764 17 6 3.1914 -12.9011 -1.2081 18 8 3.1010 -12.6295 -2.6081 19 14 2.9482 -14.7243 -0.9122 20 1 1.6101 -15.1325 -1.4103 21 1 3.9990 -15.4871 -1.6327 22 1 3.0422 -15.0065 0.5427 23 6 0.9892 -12.6251 0.0420 24 7 0.2681 -11.6264 0.6318 25 6 0.9374 -10.4282 0.5055 26 6 0.6599 -9.1343 0.9193 27 6 0.7032 -3.9989 1.8850 28 7 0.7966 -2.7098 2.0879 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 3.5739 1.7566 0.0005 33 1 2.1206 2.2703 -0.8900 34 1 2.1206 2.2704 0.8899 35 1 2.1208 -1.9059 -1.5211 36 1 2.1208 -0.3644 -2.4111 37 1 3.5741 -0.8777 -1.5213 38 1 2.1206 -0.3643 2.4111 39 1 3.5740 -0.8777 1.5214 40 1 3.5757 -3.3170 0.4581 41 1 2.9475 -5.9283 0.2962 42 1 3.4343 -7.5835 -0.2885 43 1 3.9397 -9.8575 -1.0129 44 1 4.1735 -12.6014 -0.8424 45 1 2.2515 -12.8717 -3.0017 46 1 0.6912 -13.6622 -0.0011 47 1 -0.5874 -11.7431 1.0739 48 1 -0.2495 -8.9211 1.4616 49 1 -0.1126 -4.6314 2.2023 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608520_12335838.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:51:00 Heat of formation + Delta-G solvation = 36.868727 kcal Electronic energy + Delta-G solvation = -30111.097246 eV Core-core repulsion = 25971.114547 eV Total energy + Delta-G solvation = -4139.982699 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 372.153 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.51879 -42.14127 -40.45525 -37.91919 -37.47113 -35.80132 -33.60600 -33.24569 -31.13687 -30.72065 -29.92384 -29.60363 -28.54434 -28.41156 -27.03074 -26.48185 -24.78989 -23.64020 -22.58141 -21.92456 -20.93149 -20.73038 -19.32014 -18.55698 -18.23097 -17.47404 -16.97142 -16.76529 -16.49606 -16.18841 -15.94409 -15.76963 -15.66061 -15.12746 -15.02567 -14.86076 -14.75608 -14.60863 -14.32616 -14.28296 -14.21149 -14.04640 -13.90156 -13.73244 -13.49881 -13.38438 -13.22421 -13.13682 -13.12750 -12.68438 -12.49319 -12.24620 -12.09832 -12.07580 -11.79174 -11.58002 -11.27672 -11.00776 -10.90334 -10.81639 -10.75294 -10.35305 -9.94603 -9.38330 -8.84040 -8.46478 -0.28732 0.39005 0.86128 1.13741 1.31027 1.35263 1.39077 1.48534 1.54134 1.70882 1.80654 1.84373 1.89195 1.98175 2.32678 2.34342 2.44876 2.97277 3.53922 3.55886 3.70123 3.75018 3.75939 3.85989 3.94822 4.09447 4.29418 4.35888 4.42731 4.49660 4.52577 4.56415 4.59293 4.61189 4.64652 4.66590 4.74406 4.79031 4.79940 4.81213 4.83972 4.99356 5.22118 5.26828 5.35735 5.43333 5.43651 5.49416 5.60391 5.61266 5.97520 6.01207 6.10871 6.35332 6.48749 6.61656 6.89112 7.25751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.446 4.446 2 Si 1.019 2.981 3 C -0.449 4.449 4 C -0.450 4.450 5 C -0.168 4.168 6 N -0.344 5.344 7 C 0.014 3.986 8 C -0.003 4.003 9 N -0.637 5.637 10 C 0.565 3.435 11 O -0.528 6.528 12 C -0.118 4.118 13 C -0.115 4.115 14 C -0.070 4.070 15 C -0.061 4.061 16 C -0.209 4.209 17 C -0.043 4.043 18 O -0.540 6.540 19 Si 0.945 3.055 20 H -0.253 1.253 21 H -0.250 1.250 22 H -0.250 1.250 23 C 0.068 3.932 24 N -0.583 5.583 25 C 0.082 3.918 26 C -0.054 4.054 27 C 0.047 3.953 28 N -0.283 5.283 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.176 0.824 41 H 0.410 0.590 42 H 0.126 0.874 43 H 0.133 0.867 44 H 0.115 0.885 45 H 0.374 0.626 46 H 0.173 0.827 47 H 0.422 0.578 48 H 0.138 0.862 49 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.121 -1.541 -2.422 4.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.554 4.554 2 Si 1.213 2.787 3 C -0.558 4.558 4 C -0.558 4.558 5 C -0.334 4.334 6 N -0.127 5.127 7 C -0.134 4.134 8 C -0.107 4.107 9 N -0.282 5.282 10 C 0.354 3.646 11 O -0.405 6.405 12 C -0.122 4.122 13 C -0.134 4.134 14 C -0.089 4.089 15 C -0.066 4.066 16 C -0.217 4.217 17 C -0.155 4.155 18 O -0.345 6.345 19 Si 0.767 3.233 20 H -0.177 1.177 21 H -0.173 1.173 22 H -0.174 1.174 23 C -0.061 4.061 24 N -0.185 5.185 25 C -0.025 4.025 26 C -0.075 4.075 27 C -0.139 4.139 28 N -0.105 5.105 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.123 0.877 39 H 0.117 0.883 40 H 0.193 0.807 41 H 0.246 0.754 42 H 0.144 0.856 43 H 0.151 0.849 44 H 0.133 0.867 45 H 0.221 0.779 46 H 0.190 0.810 47 H 0.260 0.740 48 H 0.155 0.845 49 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 2.286 -0.970 -1.133 2.730 hybrid contribution 0.003 -0.688 -0.384 0.788 sum 2.289 -1.658 -1.517 3.208 Atomic orbital electron populations 1.26070 1.20070 1.04928 1.04377 0.79386 0.68114 0.66365 0.64850 1.26096 1.06375 1.18250 1.05065 1.26126 1.06133 1.08333 1.15183 1.26943 1.04427 0.83283 1.18764 1.47967 1.15691 1.06340 1.42732 1.21866 1.00228 0.86509 1.04839 1.17647 0.98538 0.84696 1.09841 1.42631 1.24060 1.04628 1.56922 1.18104 0.82899 0.84466 0.79114 1.90680 1.25865 1.83385 1.40566 1.19274 0.96815 0.92125 1.04010 1.20687 0.96183 0.97129 0.99440 1.20204 0.98925 0.90863 0.98862 1.19144 0.94383 0.93163 0.99880 1.20727 0.98610 0.93034 1.09308 1.24263 0.99715 1.08757 0.82747 1.86519 1.40080 1.87889 1.19979 0.85809 0.81310 0.74819 0.81341 1.17687 1.17324 1.17362 1.21791 0.92643 0.93801 0.97829 1.41706 1.21169 1.05535 1.50121 1.18071 0.94159 0.87343 1.02886 1.20061 0.99879 0.88334 0.99249 1.24479 0.98943 0.91742 0.98733 1.77452 1.01233 1.12279 1.19579 0.91047 0.91249 0.90973 0.90974 0.90586 0.90877 0.91067 0.90763 0.91113 0.87733 0.88322 0.80677 0.75360 0.85603 0.84950 0.86729 0.77874 0.81003 0.74004 0.84469 0.77893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 -0.06 8.65 101.05 0.87 0.81 16 2 Si 1.02 -2.77 12.79 -169.99 -2.17 -4.95 16 3 C -0.45 1.19 8.65 101.05 0.87 2.06 16 4 C -0.45 0.89 8.65 101.05 0.87 1.76 16 5 C -0.17 0.26 5.59 59.85 0.33 0.59 16 6 N -0.34 -0.56 3.01 -9.17 -0.03 -0.58 16 7 C 0.01 0.01 11.44 -16.67 -0.19 -0.18 16 8 C 0.00 -0.01 6.90 -83.90 -0.58 -0.59 16 9 N -0.64 -0.59 5.42 -10.97 -0.06 -0.64 16 10 C 0.57 1.69 7.73 -12.46 -0.10 1.59 16 11 O -0.53 -3.12 13.46 5.26 0.07 -3.05 16 12 C -0.12 -0.19 5.87 -104.95 -0.62 -0.81 16 13 C -0.11 0.02 9.46 -39.56 -0.37 -0.35 16 14 C -0.07 -0.03 10.03 -39.69 -0.40 -0.43 16 15 C -0.06 -0.08 6.35 -105.05 -0.67 -0.75 16 16 C -0.21 0.02 5.57 -102.73 -0.57 -0.55 16 17 C -0.04 0.05 3.06 36.01 0.11 0.16 16 18 O -0.54 0.10 12.88 -35.23 -0.45 -0.35 16 19 Si 0.95 -1.71 26.08 -169.99 -4.43 -6.14 16 20 H -0.25 0.56 7.03 56.52 0.40 0.96 16 21 H -0.25 0.01 7.11 56.52 0.40 0.42 16 22 H -0.25 0.25 7.11 56.52 0.40 0.65 16 23 C 0.07 -0.10 10.43 -16.78 -0.17 -0.28 16 24 N -0.58 0.70 6.07 -10.68 -0.06 0.64 16 25 C 0.08 0.09 7.26 -84.00 -0.61 -0.52 16 26 C -0.05 -0.09 9.61 -39.02 -0.37 -0.47 16 27 C 0.05 0.23 10.84 -17.22 -0.19 0.04 16 28 N -0.28 -1.33 12.56 30.71 0.39 -0.94 16 29 H 0.07 0.03 7.96 -51.93 -0.41 -0.39 16 30 H 0.07 -0.02 7.96 -51.93 -0.41 -0.43 16 31 H 0.07 0.15 7.96 -51.93 -0.41 -0.26 16 32 H 0.07 -0.23 7.96 -51.93 -0.41 -0.64 16 33 H 0.08 -0.18 7.96 -51.93 -0.41 -0.59 16 34 H 0.07 -0.18 7.96 -51.93 -0.41 -0.60 16 35 H 0.07 -0.06 7.96 -51.93 -0.41 -0.48 16 36 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 37 H 0.07 -0.20 7.96 -51.93 -0.41 -0.62 16 38 H 0.10 -0.15 7.96 -51.93 -0.41 -0.56 16 39 H 0.10 -0.37 7.96 -51.93 -0.41 -0.78 16 40 H 0.18 -0.56 8.06 -52.48 -0.42 -0.99 16 41 H 0.41 -0.98 6.81 -40.82 -0.28 -1.26 16 42 H 0.13 -0.40 6.36 -52.49 -0.33 -0.73 16 43 H 0.13 -0.12 8.06 -52.49 -0.42 -0.55 16 44 H 0.11 -0.18 7.96 -51.93 -0.41 -0.59 16 45 H 0.37 -1.24 8.70 45.56 0.40 -0.85 16 46 H 0.17 -0.73 6.29 -52.49 -0.33 -1.06 16 47 H 0.42 -1.63 8.96 -40.82 -0.37 -2.00 16 48 H 0.14 0.20 7.62 -52.49 -0.40 -0.20 16 49 H 0.20 1.14 5.91 -52.49 -0.31 0.83 16 LS Contribution 411.95 15.07 6.21 6.21 Total: 0.00 -10.40 411.95 -8.55 -18.96 By element: Atomic # 1 Polarization: -5.02 SS G_CDS: -6.23 Total: -11.25 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -1.77 Total: 2.10 kcal Atomic # 7 Polarization: -1.77 SS G_CDS: 0.23 Total: -1.53 kcal Atomic # 8 Polarization: -3.01 SS G_CDS: -0.38 Total: -3.40 kcal Atomic # 14 Polarization: -4.48 SS G_CDS: -6.61 Total: -11.08 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -10.40 -8.55 -18.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_12335838.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.824 kcal (2) G-P(sol) polarization free energy of solvation -10.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds