Wall clock time and date at job start Sun Mar 7 2021 09:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86305 * 109.47022 * 2 1 4 4 C 1.86296 * 109.47187 * 240.00114 * 2 1 3 5 5 C 1.86298 * 109.47113 * 119.99645 * 2 1 3 6 6 N 1.46503 * 109.46967 * 60.00531 * 5 2 1 7 7 C 1.35822 * 126.05581 * 89.99712 * 6 5 2 8 8 C 1.35765 * 107.56025 * 179.97438 * 7 6 5 9 9 N 1.40715 * 126.08516 * 179.97438 * 8 7 6 10 10 C 1.34773 * 120.00437 * 180.02562 * 9 8 7 11 11 O 1.21623 * 119.99874 * 359.97438 * 10 9 8 12 12 C 1.47557 * 120.00104 * 179.72590 * 10 9 8 13 13 C 1.40211 * 119.83709 * 0.26864 * 12 10 9 14 14 C 1.36227 * 120.38098 * 179.97438 * 13 12 10 15 15 C 1.39870 * 119.96118 * 0.02562 * 14 13 12 16 16 C 1.46262 * 133.83896 * 179.97438 * 15 14 13 17 17 C 1.50707 * 126.48574 * 0.04324 * 16 15 14 18 18 O 1.42901 * 109.46672 * 285.00152 * 17 16 15 19 19 Si 1.86294 * 109.47114 * 165.00309 * 17 16 15 20 20 H 1.48497 * 109.47447 * 60.00151 * 19 17 16 21 21 H 1.48503 * 109.46740 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47118 * 299.99456 * 19 17 16 23 23 C 1.34454 * 107.03530 * 180.02562 * 16 15 14 24 24 N 1.36569 * 109.98165 * 359.97438 * 23 16 15 25 25 C 1.37825 * 109.86061 * 0.02562 * 24 23 16 26 26 C 1.38651 * 133.37239 * 180.32411 * 25 24 23 27 27 C 1.40267 * 107.83600 * 0.22777 * 8 7 6 28 28 N 1.30825 * 108.33712 * 359.61610 * 27 8 7 29 29 H 1.08996 * 109.47459 * 300.00271 * 1 2 3 30 30 H 1.09005 * 109.46875 * 60.00568 * 1 2 3 31 31 H 1.08999 * 109.46721 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47406 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.46792 * 300.00014 * 3 2 1 34 34 H 1.08996 * 109.47225 * 59.99585 * 3 2 1 35 35 H 1.08999 * 109.47261 * 299.99308 * 4 2 1 36 36 H 1.08995 * 109.47684 * 60.00031 * 4 2 1 37 37 H 1.09006 * 109.46830 * 179.97438 * 4 2 1 38 38 H 1.08996 * 109.47027 * 300.00349 * 5 2 1 39 39 H 1.09002 * 109.46847 * 180.02562 * 5 2 1 40 40 H 1.08005 * 126.22015 * 0.02562 * 7 6 5 41 41 H 0.97000 * 119.99450 * 359.97438 * 9 8 7 42 42 H 1.08001 * 119.80383 * 0.02562 * 13 12 10 43 43 H 1.08000 * 120.01564 * 180.02562 * 14 13 12 44 44 H 1.09000 * 109.46408 * 44.99876 * 17 16 15 45 45 H 0.96699 * 114.00399 * 299.99883 * 18 17 16 46 46 H 1.07999 * 125.00650 * 180.02562 * 23 16 15 47 47 H 0.97007 * 125.06675 * 180.02562 * 24 23 16 48 48 H 1.08000 * 120.17619 * 359.93942 * 26 25 24 49 49 H 1.08002 * 125.83039 * 179.76675 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4840 -0.8781 1.5212 6 7 1.9957 -2.2594 1.5212 7 6 2.6259 -3.3300 0.9721 8 6 1.8454 -4.4197 1.1880 9 7 2.1290 -5.7362 0.7799 10 6 1.2629 -6.7300 1.0603 11 8 0.2363 -6.4891 1.6664 12 6 1.5574 -8.1095 0.6271 13 6 2.7420 -8.3835 -0.0711 14 6 3.0253 -9.6531 -0.4758 15 6 2.1312 -10.6915 -0.1954 16 6 2.1254 -12.1269 -0.4764 17 6 3.1914 -12.9011 -1.2081 18 8 3.1010 -12.6295 -2.6081 19 14 2.9482 -14.7243 -0.9122 20 1 1.6101 -15.1325 -1.4103 21 1 3.9990 -15.4871 -1.6327 22 1 3.0422 -15.0065 0.5427 23 6 0.9892 -12.6251 0.0420 24 7 0.2681 -11.6264 0.6318 25 6 0.9374 -10.4282 0.5055 26 6 0.6599 -9.1343 0.9193 27 6 0.7032 -3.9989 1.8850 28 7 0.7966 -2.7098 2.0879 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 3.5739 1.7566 0.0005 33 1 2.1206 2.2703 -0.8900 34 1 2.1206 2.2704 0.8899 35 1 2.1208 -1.9059 -1.5211 36 1 2.1208 -0.3644 -2.4111 37 1 3.5741 -0.8777 -1.5213 38 1 2.1206 -0.3643 2.4111 39 1 3.5740 -0.8777 1.5214 40 1 3.5757 -3.3170 0.4581 41 1 2.9475 -5.9283 0.2962 42 1 3.4343 -7.5835 -0.2885 43 1 3.9397 -9.8575 -1.0129 44 1 4.1735 -12.6014 -0.8424 45 1 2.2515 -12.8717 -3.0017 46 1 0.6912 -13.6622 -0.0011 47 1 -0.5874 -11.7431 1.0739 48 1 -0.2495 -8.9211 1.4616 49 1 -0.1126 -4.6314 2.2023 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_12335838.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:50:58 Heat of formation + Delta-G solvation = 38.617531 kcal Electronic energy + Delta-G solvation = -30111.021412 eV Core-core repulsion = 25971.114547 eV Total energy + Delta-G solvation = -4139.906866 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 372.153 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.52254 -42.24412 -40.61149 -37.89045 -37.42965 -35.97220 -33.70060 -33.21811 -31.21211 -30.69827 -29.94364 -29.47960 -28.37234 -28.32243 -27.04313 -26.39466 -24.85474 -23.63856 -22.71926 -22.00328 -21.02016 -20.71835 -19.29675 -18.63801 -18.22744 -17.43400 -16.95326 -16.85381 -16.61023 -16.13425 -15.90906 -15.82944 -15.69322 -15.12178 -15.08972 -14.92889 -14.75010 -14.51933 -14.20485 -14.18178 -14.14327 -14.01077 -13.82412 -13.81067 -13.40957 -13.20412 -13.13907 -13.05357 -13.01499 -12.67701 -12.38791 -12.21781 -12.16187 -12.00986 -11.75636 -11.67763 -11.36505 -11.05024 -10.84127 -10.79649 -10.75944 -10.24512 -10.02076 -9.38969 -8.81810 -8.56768 -0.34261 0.39470 0.80404 1.28387 1.33319 1.37288 1.52645 1.59029 1.66635 1.68158 1.87855 1.92120 2.02054 2.11079 2.18943 2.31326 2.58543 2.91298 3.58102 3.66564 3.75468 3.77691 3.88105 3.93037 4.00486 4.14551 4.27309 4.33937 4.47706 4.52060 4.63199 4.66250 4.69682 4.71579 4.73640 4.75778 4.83982 4.85019 4.85126 4.88129 4.89648 5.00993 5.09819 5.24125 5.44283 5.51710 5.52550 5.61407 5.64256 5.66667 5.78152 6.00102 6.09064 6.43759 6.51792 6.70380 6.85984 7.14377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.476 4.476 2 Si 1.094 2.906 3 C -0.454 4.454 4 C -0.459 4.459 5 C -0.190 4.190 6 N -0.340 5.340 7 C 0.034 3.966 8 C -0.025 4.025 9 N -0.621 5.621 10 C 0.559 3.441 11 O -0.568 6.568 12 C -0.130 4.130 13 C -0.108 4.108 14 C -0.079 4.079 15 C -0.078 4.078 16 C -0.226 4.226 17 C -0.044 4.044 18 O -0.557 6.557 19 Si 0.985 3.015 20 H -0.241 1.241 21 H -0.277 1.277 22 H -0.260 1.260 23 C 0.077 3.923 24 N -0.579 5.579 25 C 0.066 3.934 26 C -0.067 4.067 27 C 0.022 3.978 28 N -0.318 5.318 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.045 0.955 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.133 0.867 40 H 0.222 0.778 41 H 0.427 0.573 42 H 0.157 0.843 43 H 0.146 0.854 44 H 0.114 0.886 45 H 0.386 0.614 46 H 0.201 0.799 47 H 0.433 0.567 48 H 0.128 0.872 49 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.565 -1.430 -3.504 6.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.580 4.580 2 Si 1.283 2.717 3 C -0.563 4.563 4 C -0.567 4.567 5 C -0.353 4.353 6 N -0.122 5.122 7 C -0.115 4.115 8 C -0.130 4.130 9 N -0.268 5.268 10 C 0.349 3.651 11 O -0.448 6.448 12 C -0.134 4.134 13 C -0.127 4.127 14 C -0.098 4.098 15 C -0.083 4.083 16 C -0.234 4.234 17 C -0.155 4.155 18 O -0.364 6.364 19 Si 0.808 3.192 20 H -0.164 1.164 21 H -0.202 1.202 22 H -0.184 1.184 23 C -0.052 4.052 24 N -0.182 5.182 25 C -0.040 4.040 26 C -0.088 4.088 27 C -0.163 4.163 28 N -0.142 5.142 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.121 0.879 39 H 0.151 0.849 40 H 0.239 0.761 41 H 0.266 0.734 42 H 0.174 0.826 43 H 0.164 0.836 44 H 0.132 0.868 45 H 0.235 0.765 46 H 0.218 0.782 47 H 0.273 0.727 48 H 0.146 0.854 49 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 4.685 -0.850 -2.218 5.253 hybrid contribution -0.771 -0.671 -0.063 1.024 sum 3.914 -1.521 -2.282 4.779 Atomic orbital electron populations 1.26515 1.24455 1.03012 1.03973 0.78273 0.63993 0.65924 0.63505 1.26128 1.07343 1.17765 1.05031 1.26227 1.07480 1.07658 1.15306 1.27405 1.06689 0.81719 1.19516 1.48289 1.14673 1.07689 1.41543 1.22548 1.00818 0.85094 1.03068 1.17806 0.98516 0.85885 1.10763 1.42471 1.24229 1.03739 1.56335 1.18401 0.82642 0.85309 0.78714 1.90666 1.27621 1.84008 1.42533 1.19283 0.97824 0.91250 1.05041 1.20945 0.95691 0.97898 0.98196 1.20445 0.99353 0.90910 0.99043 1.19533 0.94580 0.94271 0.99890 1.20900 0.99570 0.92569 1.10316 1.24365 0.99527 1.09340 0.82265 1.86481 1.41237 1.88158 1.20504 0.85240 0.80814 0.73152 0.79974 1.16397 1.20235 1.18437 1.22260 0.91913 0.94743 0.96265 1.41791 1.21574 1.04953 1.49881 1.18131 0.94802 0.87696 1.03419 1.20107 0.99902 0.89078 0.99708 1.24305 0.99753 0.92047 1.00190 1.77377 1.03300 1.12347 1.21209 0.91878 0.91250 0.93575 0.89569 0.90707 0.90921 0.92131 0.90990 0.89219 0.87893 0.84892 0.76131 0.73355 0.82602 0.83636 0.86770 0.76482 0.78195 0.72710 0.85382 0.80045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 -0.97 8.65 113.37 0.98 0.01 16 2 Si 1.09 -6.96 12.79 68.60 0.88 -6.09 16 3 C -0.45 3.21 8.65 113.37 0.98 4.19 16 4 C -0.46 2.60 8.65 113.37 0.98 3.58 16 5 C -0.19 0.85 5.59 127.77 0.71 1.56 16 6 N -0.34 -1.01 3.01 -182.91 -0.55 -1.56 16 7 C 0.03 -0.01 11.44 83.50 0.96 0.95 16 8 C -0.03 -0.15 6.90 37.63 0.26 0.11 16 9 N -0.62 -1.45 5.42 -306.86 -1.66 -3.12 16 10 C 0.56 4.46 7.73 86.70 0.67 5.14 16 11 O -0.57 -8.77 13.46 -4.10 -0.06 -8.83 16 12 C -0.13 -0.60 5.87 -20.08 -0.12 -0.72 16 13 C -0.11 0.06 9.46 22.28 0.21 0.27 16 14 C -0.08 -0.06 10.03 22.20 0.22 0.16 16 15 C -0.08 -0.23 6.35 -20.14 -0.13 -0.36 16 16 C -0.23 0.11 5.57 -18.64 -0.10 0.01 16 17 C -0.04 0.11 3.06 71.24 0.22 0.33 16 18 O -0.56 0.40 12.88 -148.98 -1.92 -1.52 16 19 Si 0.99 -4.25 26.08 68.60 1.79 -2.46 16 20 H -0.24 1.55 7.03 99.48 0.70 2.25 16 21 H -0.28 -0.05 7.11 99.48 0.71 0.66 16 22 H -0.26 0.71 7.11 99.48 0.71 1.42 16 23 C 0.08 -0.29 10.43 83.09 0.87 0.58 16 24 N -0.58 1.26 6.07 -187.72 -1.14 0.12 16 25 C 0.07 0.22 7.26 38.96 0.28 0.50 16 26 C -0.07 -0.37 9.61 22.63 0.22 -0.15 16 27 C 0.02 0.28 10.84 85.34 0.92 1.20 16 28 N -0.32 -3.67 12.56 -56.76 -0.71 -4.38 16 29 H 0.06 0.19 7.96 -2.39 -0.02 0.17 16 30 H 0.07 0.08 7.96 -2.38 -0.02 0.06 16 31 H 0.04 0.33 7.96 -2.39 -0.02 0.31 16 32 H 0.09 -0.80 7.96 -2.39 -0.02 -0.82 16 33 H 0.07 -0.46 7.96 -2.38 -0.02 -0.48 16 34 H 0.07 -0.47 7.96 -2.39 -0.02 -0.49 16 35 H 0.06 -0.17 7.96 -2.39 -0.02 -0.19 16 36 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 37 H 0.09 -0.82 7.96 -2.38 -0.02 -0.84 16 38 H 0.10 -0.36 7.96 -2.39 -0.02 -0.38 16 39 H 0.13 -1.47 7.96 -2.39 -0.02 -1.49 16 40 H 0.22 -2.29 8.06 -2.91 -0.02 -2.31 16 41 H 0.43 -2.47 6.81 -92.71 -0.63 -3.10 16 42 H 0.16 -1.22 6.36 -2.91 -0.02 -1.24 16 43 H 0.15 -0.36 8.06 -2.91 -0.02 -0.38 16 44 H 0.11 -0.35 7.96 -2.39 -0.02 -0.37 16 45 H 0.39 -2.75 8.70 -74.06 -0.64 -3.39 16 46 H 0.20 -2.06 6.29 -2.91 -0.02 -2.08 16 47 H 0.43 -3.21 8.96 -92.70 -0.83 -4.04 16 48 H 0.13 0.80 7.62 -2.91 -0.02 0.78 16 49 H 0.18 2.92 5.91 -2.91 -0.02 2.90 16 Total: 0.00 -28.30 411.95 4.42 -23.88 By element: Atomic # 1 Polarization: -13.06 SS G_CDS: -0.34 Total: -13.40 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: 8.14 Total: 17.36 kcal Atomic # 7 Polarization: -4.87 SS G_CDS: -4.07 Total: -8.94 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: -1.97 Total: -10.35 kcal Atomic # 14 Polarization: -11.22 SS G_CDS: 2.67 Total: -8.55 kcal Total: -28.30 4.42 -23.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_12335838.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.499 kcal (2) G-P(sol) polarization free energy of solvation -28.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds