Wall clock time and date at job start Sun Mar 7 2021 10:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86304 * 109.47205 * 2 1 4 4 C 1.86303 * 109.46948 * 239.99943 * 2 1 3 5 5 C 1.86301 * 109.47334 * 120.00082 * 2 1 3 6 6 N 1.46503 * 109.46868 * 60.00075 * 5 2 1 7 7 C 1.35815 * 126.05303 * 90.00200 * 6 5 2 8 8 C 1.35774 * 107.55896 * 180.02562 * 7 6 5 9 9 N 1.40707 * 126.08474 * 180.02562 * 8 7 6 10 10 C 1.34777 * 119.99858 * 180.02562 * 9 8 7 11 11 O 1.21583 * 120.00271 * 359.97438 * 10 9 8 12 12 C 1.47826 * 119.99635 * 179.72210 * 10 9 8 13 13 C 1.39570 * 120.14120 * 180.26890 * 12 10 9 14 14 C 1.37978 * 119.87526 * 179.97438 * 13 12 10 15 15 C 1.50694 * 119.92139 * 179.97438 * 14 13 12 16 16 O 1.42899 * 109.47246 * 300.00164 * 15 14 13 17 17 Si 1.86305 * 109.47146 * 180.02562 * 15 14 13 18 18 H 1.48499 * 109.47094 * 59.99860 * 17 15 14 19 19 H 1.48496 * 109.47290 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47052 * 299.99905 * 17 15 14 21 21 C 1.38319 * 120.15343 * 0.02562 * 14 13 12 22 22 C 1.38465 * 120.28781 * 0.02562 * 21 14 13 23 23 Br 1.89101 * 119.93684 * 179.97438 * 22 21 14 24 24 C 1.38032 * 120.12565 * 359.69935 * 22 21 14 25 25 C 1.40267 * 107.83434 * 0.26319 * 8 7 6 26 26 N 1.30836 * 108.33538 * 359.55155 * 25 8 7 27 27 H 1.09003 * 109.46869 * 300.00223 * 1 2 3 28 28 H 1.08993 * 109.47575 * 59.99793 * 1 2 3 29 29 H 1.09000 * 109.47206 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47054 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46884 * 299.99992 * 3 2 1 32 32 H 1.08999 * 109.46907 * 60.00120 * 3 2 1 33 33 H 1.09000 * 109.47347 * 300.00458 * 4 2 1 34 34 H 1.09006 * 109.47005 * 60.00349 * 4 2 1 35 35 H 1.08998 * 109.47212 * 179.97438 * 4 2 1 36 36 H 1.08999 * 109.47154 * 300.00110 * 5 2 1 37 37 H 1.08995 * 109.46951 * 179.97438 * 5 2 1 38 38 H 1.07994 * 126.22209 * 0.02562 * 7 6 5 39 39 H 0.97000 * 119.99659 * 359.97438 * 9 8 7 40 40 H 1.07997 * 120.05674 * 359.96451 * 13 12 10 41 41 H 1.08998 * 109.47605 * 60.00517 * 15 14 13 42 42 H 0.96697 * 113.99853 * 300.00099 * 16 15 14 43 43 H 1.08005 * 119.85539 * 179.97438 * 21 14 13 44 44 H 1.07998 * 120.08278 * 180.27415 * 24 22 21 45 45 H 1.08002 * 125.83793 * 179.74059 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4839 -0.8783 -1.5212 5 6 2.4841 -0.8782 1.5211 6 7 1.9957 -2.2595 1.5210 7 6 2.6258 -3.3300 0.9720 8 6 1.8447 -4.4196 1.1868 9 7 2.1285 -5.7361 0.7792 10 6 1.2617 -6.7296 1.0585 11 8 0.2347 -6.4884 1.6629 12 6 1.5570 -8.1117 0.6249 13 6 0.6587 -9.1419 0.9076 14 6 0.9396 -10.4298 0.4998 15 6 -0.0292 -11.5430 0.8050 16 8 -0.1946 -11.6560 2.2198 17 14 0.6344 -13.1468 0.1278 18 1 1.9456 -13.4452 0.7577 19 1 -0.3206 -14.2436 0.4279 20 1 0.8067 -13.0297 -1.3425 21 6 2.1088 -10.7016 -0.1874 22 6 3.0051 -9.6848 -0.4703 23 35 4.6009 -10.0677 -1.4098 24 6 2.7331 -8.3912 -0.0729 25 6 0.7018 -3.9984 1.8824 26 7 0.7960 -2.7096 2.0868 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.5740 1.7565 -0.0005 31 1 2.1207 2.2703 -0.8900 32 1 2.1207 2.2703 0.8900 33 1 2.1205 -1.9059 -1.5212 34 1 2.1206 -0.3644 -2.4112 35 1 3.5739 -0.8779 -1.5214 36 1 2.1207 -0.3645 2.4111 37 1 3.5740 -0.8786 1.5208 38 1 3.5755 -3.3170 0.4580 39 1 2.9477 -5.9284 0.2967 40 1 -0.2543 -8.9313 1.4445 41 1 -0.9918 -11.3238 0.3429 42 1 0.6234 -11.8509 2.6971 43 1 2.3241 -11.7116 -0.5039 44 1 3.4306 -7.5978 -0.2979 45 1 -0.1149 -4.6306 2.1984 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608520_12335870.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:12:41 Heat of formation + Delta-G solvation = 8.168350 kcal Electronic energy + Delta-G solvation = -27487.227147 eV Core-core repulsion = 23483.597714 eV Total energy + Delta-G solvation = -4003.629433 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 411.053 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.34533 -41.35488 -39.86993 -37.75306 -35.97900 -33.87052 -33.67039 -33.02722 -30.54339 -30.35807 -29.68901 -28.58657 -28.44953 -27.29395 -27.01770 -25.31612 -22.90576 -22.72430 -22.03845 -20.88825 -19.15936 -18.56563 -17.81307 -17.60349 -17.17149 -16.63757 -16.47033 -16.37526 -15.90074 -15.80462 -15.28251 -15.09043 -14.95653 -14.78574 -14.36845 -14.32037 -14.31607 -14.03236 -13.93856 -13.80875 -13.55987 -13.41910 -13.36436 -13.25575 -13.17190 -13.04928 -12.38253 -12.24463 -12.21475 -11.99641 -11.83607 -11.65658 -11.51979 -11.36927 -11.04826 -11.03615 -10.93659 -10.63855 -10.32239 -10.02212 -9.97862 -8.59694 -0.58965 -0.22977 0.34199 0.76987 0.98186 1.26102 1.31341 1.37216 1.41375 1.54490 1.67423 1.78786 1.82832 2.03958 2.11582 2.40759 2.54525 3.16560 3.25245 3.38778 3.66624 3.68714 3.77517 3.86259 3.90988 4.13993 4.17297 4.29498 4.47360 4.47823 4.55716 4.57951 4.60624 4.62109 4.64463 4.66397 4.73590 4.76725 4.80121 4.88208 5.01924 5.12087 5.32320 5.33716 5.39440 5.57235 5.90945 6.01454 6.30126 6.41255 6.80041 7.06154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.446 4.446 2 Si 1.020 2.980 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.169 4.169 6 N -0.343 5.343 7 C 0.017 3.983 8 C -0.006 4.006 9 N -0.636 5.636 10 C 0.563 3.437 11 O -0.515 6.515 12 C -0.124 4.124 13 C -0.012 4.012 14 C -0.119 4.119 15 C -0.079 4.079 16 O -0.533 6.533 17 Si 0.938 3.062 18 H -0.247 1.247 19 H -0.246 1.246 20 H -0.246 1.246 21 C -0.072 4.072 22 C -0.093 4.093 23 Br -0.033 7.033 24 C -0.054 4.054 25 C 0.048 3.952 26 N -0.281 5.281 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.176 0.824 39 H 0.409 0.591 40 H 0.153 0.847 41 H 0.126 0.874 42 H 0.378 0.622 43 H 0.136 0.864 44 H 0.139 0.861 45 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.757 0.625 -2.994 5.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.555 4.555 2 Si 1.214 2.786 3 C -0.558 4.558 4 C -0.558 4.558 5 C -0.335 4.335 6 N -0.125 5.125 7 C -0.132 4.132 8 C -0.111 4.111 9 N -0.281 5.281 10 C 0.350 3.650 11 O -0.391 6.391 12 C -0.128 4.128 13 C -0.032 4.032 14 C -0.120 4.120 15 C -0.190 4.190 16 O -0.338 6.338 17 Si 0.760 3.240 18 H -0.170 1.170 19 H -0.170 1.170 20 H -0.169 1.169 21 C -0.091 4.091 22 C -0.173 4.173 23 Br 0.052 6.948 24 C -0.075 4.075 25 C -0.138 4.138 26 N -0.103 5.103 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.124 0.876 37 H 0.117 0.883 38 H 0.194 0.806 39 H 0.245 0.755 40 H 0.170 0.830 41 H 0.144 0.856 42 H 0.226 0.774 43 H 0.154 0.846 44 H 0.156 0.844 45 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 3.850 1.114 -2.844 4.915 hybrid contribution 1.190 -0.433 -0.135 1.274 sum 5.040 0.680 -2.979 5.894 Atomic orbital electron populations 1.26070 1.20032 1.04929 1.04424 0.79371 0.68113 0.66376 0.64744 1.26097 1.06376 1.18242 1.05097 1.26130 1.06127 1.08293 1.15235 1.26971 1.04460 0.83187 1.18882 1.47994 1.15621 1.06388 1.42534 1.21876 1.00164 0.86506 1.04609 1.17612 0.98699 0.84457 1.10297 1.42608 1.23810 1.04839 1.56887 1.18025 0.83232 0.84134 0.79562 1.90714 1.25466 1.82982 1.39934 1.19823 0.96344 0.93689 1.02920 1.21299 0.98472 0.90026 0.93368 1.20364 0.95719 0.96135 0.99779 1.25004 1.03034 1.03892 0.87069 1.86564 1.36944 1.94025 1.16247 0.85831 0.80613 0.76776 0.80793 1.17006 1.16961 1.16942 1.21265 0.92647 0.98980 0.96236 1.21615 0.95564 0.95724 1.04351 1.96846 1.28843 1.95261 1.73821 1.21276 0.95900 0.95381 0.94945 1.24484 0.98861 0.91797 0.98632 1.77477 1.01130 1.12238 1.19494 0.91020 0.91220 0.90982 0.90979 0.90570 0.90851 0.91115 0.90731 0.91120 0.87639 0.88276 0.80646 0.75508 0.82951 0.85607 0.77448 0.84629 0.84364 0.77832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.13 8.65 101.05 0.87 1.00 16 2 Si 1.02 -3.24 12.79 -169.99 -2.17 -5.42 16 3 C -0.45 1.34 8.65 101.05 0.87 2.21 16 4 C -0.45 1.10 8.65 101.05 0.87 1.98 16 5 C -0.17 0.35 5.59 59.85 0.33 0.68 16 6 N -0.34 -0.33 3.01 -9.17 -0.03 -0.36 16 7 C 0.02 0.00 11.44 -16.67 -0.19 -0.19 16 8 C -0.01 -0.01 6.90 -83.90 -0.58 -0.59 16 9 N -0.64 0.11 5.42 -10.89 -0.06 0.05 16 10 C 0.56 0.95 7.74 -12.34 -0.10 0.86 16 11 O -0.52 -2.45 13.50 5.29 0.07 -2.38 16 12 C -0.12 0.00 5.87 -104.97 -0.62 -0.62 16 13 C -0.01 0.00 9.15 -39.18 -0.36 -0.36 16 14 C -0.12 0.11 5.38 -104.69 -0.56 -0.46 16 15 C -0.08 0.13 2.82 36.00 0.10 0.23 16 16 O -0.53 0.37 12.76 -35.23 -0.45 -0.08 16 17 Si 0.94 -1.53 25.06 -169.99 -4.26 -5.79 16 18 H -0.25 0.38 7.11 56.52 0.40 0.78 16 19 H -0.25 0.02 7.11 56.52 0.40 0.42 16 20 H -0.25 0.29 7.11 56.52 0.40 0.70 16 21 C -0.07 0.06 8.41 -39.47 -0.33 -0.27 16 22 C -0.09 0.07 6.22 -39.57 -0.25 -0.17 16 23 Br -0.03 0.02 33.69 -68.01 -2.29 -2.27 16 24 C -0.05 0.08 9.28 -39.15 -0.36 -0.28 16 25 C 0.05 0.19 10.84 -17.21 -0.19 0.01 16 26 N -0.28 -1.13 12.56 30.71 0.39 -0.75 16 27 H 0.07 0.00 7.96 -51.93 -0.41 -0.41 16 28 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 29 H 0.07 0.12 7.96 -51.93 -0.41 -0.29 16 30 H 0.07 -0.25 7.96 -51.93 -0.41 -0.66 16 31 H 0.08 -0.20 7.96 -51.93 -0.41 -0.61 16 32 H 0.07 -0.21 7.96 -51.93 -0.41 -0.62 16 33 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 34 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 35 H 0.07 -0.23 7.96 -51.93 -0.41 -0.65 16 36 H 0.11 -0.20 7.96 -51.93 -0.41 -0.61 16 37 H 0.10 -0.42 7.96 -51.93 -0.41 -0.83 16 38 H 0.18 -0.69 8.06 -52.49 -0.42 -1.11 16 39 H 0.41 -1.41 6.86 -40.82 -0.28 -1.69 16 40 H 0.15 0.12 7.65 -52.49 -0.40 -0.28 16 41 H 0.13 -0.31 7.96 -51.93 -0.41 -0.72 16 42 H 0.38 -1.48 8.70 45.56 0.40 -1.08 16 43 H 0.14 -0.23 4.86 -52.48 -0.26 -0.49 16 44 H 0.14 -0.55 6.41 -52.49 -0.34 -0.88 16 45 H 0.21 0.97 5.91 -52.49 -0.31 0.66 16 LS Contribution 399.72 15.07 6.02 6.02 Total: 0.00 -8.28 399.72 -8.62 -16.91 By element: Atomic # 1 Polarization: -4.58 SS G_CDS: -5.37 Total: -9.95 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -0.47 Total: 4.02 kcal Atomic # 7 Polarization: -1.36 SS G_CDS: 0.30 Total: -1.06 kcal Atomic # 8 Polarization: -2.08 SS G_CDS: -0.38 Total: -2.46 kcal Atomic # 14 Polarization: -4.78 SS G_CDS: -6.43 Total: -11.21 kcal Atomic # 35 Polarization: 0.02 SS G_CDS: -2.29 Total: -2.27 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -8.28 -8.62 -16.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_12335870.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.074 kcal (2) G-P(sol) polarization free energy of solvation -8.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds