Wall clock time and date at job start Sun Mar 7 2021 10:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86304 * 109.47205 * 2 1 4 4 C 1.86303 * 109.46948 * 239.99943 * 2 1 3 5 5 C 1.86301 * 109.47334 * 120.00082 * 2 1 3 6 6 N 1.46503 * 109.46868 * 60.00075 * 5 2 1 7 7 C 1.35815 * 126.05303 * 90.00200 * 6 5 2 8 8 C 1.35774 * 107.55896 * 180.02562 * 7 6 5 9 9 N 1.40707 * 126.08474 * 180.02562 * 8 7 6 10 10 C 1.34777 * 119.99858 * 180.02562 * 9 8 7 11 11 O 1.21583 * 120.00271 * 359.97438 * 10 9 8 12 12 C 1.47826 * 119.99635 * 179.72210 * 10 9 8 13 13 C 1.39570 * 120.14120 * 180.26890 * 12 10 9 14 14 C 1.37978 * 119.87526 * 179.97438 * 13 12 10 15 15 C 1.50694 * 119.92139 * 179.97438 * 14 13 12 16 16 O 1.42899 * 109.47246 * 300.00164 * 15 14 13 17 17 Si 1.86305 * 109.47146 * 180.02562 * 15 14 13 18 18 H 1.48499 * 109.47094 * 59.99860 * 17 15 14 19 19 H 1.48496 * 109.47290 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47052 * 299.99905 * 17 15 14 21 21 C 1.38319 * 120.15343 * 0.02562 * 14 13 12 22 22 C 1.38465 * 120.28781 * 0.02562 * 21 14 13 23 23 Br 1.89101 * 119.93684 * 179.97438 * 22 21 14 24 24 C 1.38032 * 120.12565 * 359.69935 * 22 21 14 25 25 C 1.40267 * 107.83434 * 0.26319 * 8 7 6 26 26 N 1.30836 * 108.33538 * 359.55155 * 25 8 7 27 27 H 1.09003 * 109.46869 * 300.00223 * 1 2 3 28 28 H 1.08993 * 109.47575 * 59.99793 * 1 2 3 29 29 H 1.09000 * 109.47206 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47054 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46884 * 299.99992 * 3 2 1 32 32 H 1.08999 * 109.46907 * 60.00120 * 3 2 1 33 33 H 1.09000 * 109.47347 * 300.00458 * 4 2 1 34 34 H 1.09006 * 109.47005 * 60.00349 * 4 2 1 35 35 H 1.08998 * 109.47212 * 179.97438 * 4 2 1 36 36 H 1.08999 * 109.47154 * 300.00110 * 5 2 1 37 37 H 1.08995 * 109.46951 * 179.97438 * 5 2 1 38 38 H 1.07994 * 126.22209 * 0.02562 * 7 6 5 39 39 H 0.97000 * 119.99659 * 359.97438 * 9 8 7 40 40 H 1.07997 * 120.05674 * 359.96451 * 13 12 10 41 41 H 1.08998 * 109.47605 * 60.00517 * 15 14 13 42 42 H 0.96697 * 113.99853 * 300.00099 * 16 15 14 43 43 H 1.08005 * 119.85539 * 179.97438 * 21 14 13 44 44 H 1.07998 * 120.08278 * 180.27415 * 24 22 21 45 45 H 1.08002 * 125.83793 * 179.74059 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4839 -0.8783 -1.5212 5 6 2.4841 -0.8782 1.5211 6 7 1.9957 -2.2595 1.5210 7 6 2.6258 -3.3300 0.9720 8 6 1.8447 -4.4196 1.1868 9 7 2.1285 -5.7361 0.7792 10 6 1.2617 -6.7296 1.0585 11 8 0.2347 -6.4884 1.6629 12 6 1.5570 -8.1117 0.6249 13 6 0.6587 -9.1419 0.9076 14 6 0.9396 -10.4298 0.4998 15 6 -0.0292 -11.5430 0.8050 16 8 -0.1946 -11.6560 2.2198 17 14 0.6344 -13.1468 0.1278 18 1 1.9456 -13.4452 0.7577 19 1 -0.3206 -14.2436 0.4279 20 1 0.8067 -13.0297 -1.3425 21 6 2.1088 -10.7016 -0.1874 22 6 3.0051 -9.6848 -0.4703 23 35 4.6009 -10.0677 -1.4098 24 6 2.7331 -8.3912 -0.0729 25 6 0.7018 -3.9984 1.8824 26 7 0.7960 -2.7096 2.0868 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.5740 1.7565 -0.0005 31 1 2.1207 2.2703 -0.8900 32 1 2.1207 2.2703 0.8900 33 1 2.1205 -1.9059 -1.5212 34 1 2.1206 -0.3644 -2.4112 35 1 3.5739 -0.8779 -1.5214 36 1 2.1207 -0.3645 2.4111 37 1 3.5740 -0.8786 1.5208 38 1 3.5755 -3.3170 0.4580 39 1 2.9477 -5.9284 0.2967 40 1 -0.2543 -8.9313 1.4445 41 1 -0.9918 -11.3238 0.3429 42 1 0.6234 -11.8509 2.6971 43 1 2.3241 -11.7116 -0.5039 44 1 3.4306 -7.5978 -0.2979 45 1 -0.1149 -4.6306 2.1984 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_12335870.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:12:39 Heat of formation + Delta-G solvation = 12.543516 kcal Electronic energy + Delta-G solvation = -27487.037425 eV Core-core repulsion = 23483.597714 eV Total energy + Delta-G solvation = -4003.439712 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 411.053 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.41978 -41.36167 -39.90952 -37.67728 -36.07314 -33.88831 -33.61152 -33.01217 -30.48797 -30.38304 -29.51357 -28.37185 -28.33189 -27.23725 -26.94071 -25.33581 -22.88654 -22.75786 -22.05106 -20.96386 -19.13305 -18.56214 -17.78891 -17.53711 -17.15502 -16.68094 -16.44573 -16.29732 -15.92952 -15.79995 -15.30915 -15.08775 -14.95148 -14.71011 -14.23885 -14.18626 -14.14712 -13.95910 -13.84159 -13.81826 -13.41824 -13.27624 -13.20348 -13.13433 -13.01781 -13.00941 -12.27956 -12.23876 -12.13372 -11.95765 -11.77060 -11.76407 -11.46716 -11.39071 -11.15214 -10.84301 -10.79855 -10.55774 -10.26158 -10.03657 -9.91680 -8.64940 -0.56081 -0.15927 0.40900 0.77237 1.09684 1.32214 1.36194 1.43509 1.48350 1.67359 1.87364 1.89020 1.94503 1.97824 2.17538 2.52567 2.58347 3.27234 3.32868 3.55426 3.73852 3.77683 3.86395 3.95109 3.98698 4.20446 4.24652 4.32099 4.57797 4.59910 4.68933 4.70749 4.72753 4.74493 4.75796 4.83567 4.84755 4.87686 4.89101 4.93365 5.04494 5.07979 5.37577 5.52042 5.61199 5.66184 5.74633 6.06447 6.33475 6.66299 6.67814 7.03694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.476 4.476 2 Si 1.096 2.904 3 C -0.455 4.455 4 C -0.459 4.459 5 C -0.190 4.190 6 N -0.339 5.339 7 C 0.036 3.964 8 C -0.026 4.026 9 N -0.621 5.621 10 C 0.558 3.442 11 O -0.556 6.556 12 C -0.128 4.128 13 C -0.022 4.022 14 C -0.115 4.115 15 C -0.080 4.080 16 O -0.550 6.550 17 Si 0.968 3.032 18 H -0.244 1.244 19 H -0.270 1.270 20 H -0.249 1.249 21 C -0.073 4.073 22 C -0.099 4.099 23 Br -0.031 7.031 24 C -0.044 4.044 25 C 0.024 3.976 26 N -0.317 5.317 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.046 0.954 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.133 0.867 38 H 0.222 0.778 39 H 0.426 0.574 40 H 0.139 0.861 41 H 0.131 0.869 42 H 0.391 0.609 43 H 0.145 0.855 44 H 0.165 0.835 45 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.807 1.204 -4.133 8.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.580 4.580 2 Si 1.285 2.715 3 C -0.564 4.564 4 C -0.566 4.566 5 C -0.353 4.353 6 N -0.121 5.121 7 C -0.114 4.114 8 C -0.131 4.131 9 N -0.267 5.267 10 C 0.347 3.653 11 O -0.434 6.434 12 C -0.133 4.133 13 C -0.042 4.042 14 C -0.116 4.116 15 C -0.190 4.190 16 O -0.357 6.357 17 Si 0.791 3.209 18 H -0.167 1.167 19 H -0.195 1.195 20 H -0.172 1.172 21 C -0.093 4.093 22 C -0.178 4.178 23 Br 0.055 6.945 24 C -0.064 4.064 25 C -0.161 4.161 26 N -0.142 5.142 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.065 0.935 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.121 0.879 37 H 0.151 0.849 38 H 0.239 0.761 39 H 0.265 0.735 40 H 0.157 0.843 41 H 0.148 0.852 42 H 0.240 0.760 43 H 0.162 0.838 44 H 0.182 0.818 45 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 6.900 1.701 -3.985 8.148 hybrid contribution 0.219 -0.552 0.217 0.632 sum 7.119 1.149 -3.768 8.137 Atomic orbital electron populations 1.26516 1.24437 1.03048 1.03954 0.78239 0.63962 0.65816 0.63482 1.26146 1.07322 1.17930 1.04995 1.26224 1.07455 1.07681 1.15282 1.27410 1.06685 0.81718 1.19534 1.48297 1.14644 1.07702 1.41456 1.22557 1.00776 0.85118 1.02901 1.17750 0.98566 0.85687 1.11081 1.42460 1.24030 1.03914 1.56301 1.18321 0.82924 0.84981 0.79114 1.90706 1.27233 1.83618 1.41889 1.19703 0.97126 0.92656 1.03771 1.21274 0.98326 0.90764 0.93824 1.20351 0.95910 0.95746 0.99634 1.25087 1.03295 1.03866 0.86766 1.86532 1.38244 1.94085 1.16822 0.85412 0.79821 0.75355 0.80292 1.16701 1.19493 1.17230 1.21406 0.92462 0.99516 0.95910 1.21702 0.95671 0.95964 1.04489 1.96853 1.28619 1.95279 1.73767 1.21467 0.95415 0.95927 0.93627 1.24324 0.99695 0.92064 1.00043 1.77403 1.03206 1.12396 1.21158 0.91910 0.91290 0.93498 0.89619 0.90763 0.90957 0.92052 0.91020 0.89247 0.87868 0.84884 0.76149 0.73478 0.84338 0.85160 0.76006 0.83786 0.81757 0.79912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 -0.54 8.65 113.37 0.98 0.44 16 2 Si 1.10 -8.01 12.79 68.60 0.88 -7.13 16 3 C -0.46 3.49 8.65 113.37 0.98 4.47 16 4 C -0.46 3.08 8.65 113.37 0.98 4.06 16 5 C -0.19 1.06 5.59 127.77 0.71 1.77 16 6 N -0.34 -0.53 3.01 -182.92 -0.55 -1.08 16 7 C 0.04 -0.07 11.44 83.50 0.96 0.89 16 8 C -0.03 -0.10 6.90 37.64 0.26 0.16 16 9 N -0.62 0.19 5.42 -306.64 -1.66 -1.47 16 10 C 0.56 2.68 7.74 86.78 0.67 3.35 16 11 O -0.56 -7.02 13.50 -3.98 -0.05 -7.07 16 12 C -0.13 -0.09 5.87 -20.09 -0.12 -0.21 16 13 C -0.02 -0.04 9.15 22.53 0.21 0.17 16 14 C -0.12 0.14 5.38 -19.91 -0.11 0.04 16 15 C -0.08 0.20 2.82 71.23 0.20 0.40 16 16 O -0.55 0.25 12.76 -148.98 -1.90 -1.65 16 17 Si 0.97 -3.01 25.06 68.60 1.72 -1.29 16 18 H -0.24 0.89 7.11 99.48 0.71 1.60 16 19 H -0.27 -0.22 7.11 99.48 0.71 0.49 16 20 H -0.25 0.67 7.11 99.48 0.71 1.38 16 21 C -0.07 0.15 8.41 22.34 0.19 0.34 16 22 C -0.10 0.23 6.22 22.28 0.14 0.37 16 23 Br -0.03 0.08 33.69 -20.37 -0.69 -0.61 16 24 C -0.04 0.17 9.28 22.55 0.21 0.38 16 25 C 0.02 0.25 10.84 85.33 0.92 1.18 16 26 N -0.32 -3.19 12.56 -56.76 -0.71 -3.90 16 27 H 0.06 0.14 7.96 -2.39 -0.02 0.12 16 28 H 0.07 0.03 7.96 -2.39 -0.02 0.01 16 29 H 0.05 0.29 7.96 -2.39 -0.02 0.27 16 30 H 0.08 -0.84 7.96 -2.39 -0.02 -0.86 16 31 H 0.07 -0.49 7.96 -2.39 -0.02 -0.51 16 32 H 0.07 -0.50 7.96 -2.39 -0.02 -0.52 16 33 H 0.06 -0.26 7.96 -2.39 -0.02 -0.28 16 34 H 0.07 -0.40 7.96 -2.38 -0.02 -0.42 16 35 H 0.09 -0.90 7.96 -2.39 -0.02 -0.92 16 36 H 0.10 -0.46 7.96 -2.39 -0.02 -0.48 16 37 H 0.13 -1.61 7.96 -2.39 -0.02 -1.63 16 38 H 0.22 -2.64 8.06 -2.91 -0.02 -2.66 16 39 H 0.43 -3.57 6.86 -92.71 -0.64 -4.20 16 40 H 0.14 0.60 7.65 -2.91 -0.02 0.57 16 41 H 0.13 -0.51 7.96 -2.39 -0.02 -0.53 16 42 H 0.39 -2.78 8.70 -74.06 -0.64 -3.43 16 43 H 0.14 -0.59 4.86 -2.91 -0.01 -0.61 16 44 H 0.17 -1.63 6.41 -2.91 -0.02 -1.65 16 45 H 0.18 2.57 5.91 -2.91 -0.02 2.55 16 Total: 0.00 -22.83 399.72 4.73 -18.09 By element: Atomic # 1 Polarization: -12.20 SS G_CDS: 0.52 Total: -11.68 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: 7.19 Total: 17.80 kcal Atomic # 7 Polarization: -3.53 SS G_CDS: -2.93 Total: -6.46 kcal Atomic # 8 Polarization: -6.77 SS G_CDS: -1.96 Total: -8.72 kcal Atomic # 14 Polarization: -11.02 SS G_CDS: 2.60 Total: -8.42 kcal Atomic # 35 Polarization: 0.08 SS G_CDS: -0.69 Total: -0.61 kcal Total: -22.83 4.73 -18.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_12335870.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.638 kcal (2) G-P(sol) polarization free energy of solvation -22.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds