Wall clock time and date at job start Sun Mar 7 2021 10:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86303 * 109.47161 * 2 1 4 4 C 1.86299 * 109.47217 * 119.99499 * 2 1 3 5 5 C 1.86293 * 109.47364 * 239.99588 * 2 1 3 6 6 N 1.46505 * 109.46974 * 60.00146 * 5 2 1 7 7 C 1.35834 * 126.05371 * 90.00220 * 6 5 2 8 8 C 1.35777 * 107.55604 * 179.97438 * 7 6 5 9 9 N 1.40685 * 126.08141 * 179.97438 * 8 7 6 10 10 C 1.34775 * 119.99982 * 179.97438 * 9 8 7 11 11 O 1.21725 * 119.99722 * 0.02562 * 10 9 8 12 12 C 1.46409 * 120.00072 * 180.02562 * 10 9 8 13 13 C 1.34813 * 120.00187 * 180.02562 * 12 10 9 14 14 C 1.47212 * 120.00087 * 180.02562 * 13 12 10 15 15 C 1.39825 * 120.16741 * 359.72283 * 14 13 12 16 16 C 1.37899 * 119.82305 * 179.74434 * 15 14 13 17 17 C 1.38399 * 120.16897 * 0.52800 * 16 15 14 18 18 C 1.50702 * 119.82509 * 179.69674 * 17 16 15 19 19 O 1.42898 * 109.47226 * 245.02322 * 18 17 16 20 20 Si 1.86295 * 109.47238 * 5.02852 * 18 17 16 21 21 H 1.48498 * 109.46998 * 299.99627 * 20 18 17 22 22 H 1.48502 * 109.47205 * 59.99751 * 20 18 17 23 23 H 1.48494 * 109.47063 * 179.97438 * 20 18 17 24 24 C 1.38405 * 120.34735 * 359.72709 * 17 16 15 25 25 C 1.37892 * 120.16546 * 0.02562 * 24 17 16 26 26 C 1.40267 * 107.83348 * 0.02562 * 8 7 6 27 27 N 1.30832 * 108.33854 * 359.75391 * 26 8 7 28 28 H 1.09001 * 109.46570 * 60.00396 * 1 2 3 29 29 H 1.09001 * 109.47076 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47204 * 300.00331 * 1 2 3 31 31 H 1.09000 * 109.47332 * 59.99747 * 3 2 1 32 32 H 1.09002 * 109.47176 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.46801 * 299.99758 * 3 2 1 34 34 H 1.09001 * 109.47058 * 60.00032 * 4 2 1 35 35 H 1.09002 * 109.47782 * 180.02562 * 4 2 1 36 36 H 1.09000 * 109.47172 * 300.00189 * 4 2 1 37 37 H 1.09002 * 109.47236 * 180.02562 * 5 2 1 38 38 H 1.08998 * 109.47688 * 299.99834 * 5 2 1 39 39 H 1.08004 * 126.21750 * 359.93709 * 7 6 5 40 40 H 0.96997 * 120.00071 * 0.02562 * 9 8 7 41 41 H 1.08001 * 120.00015 * 359.97438 * 12 10 9 42 42 H 1.08005 * 120.00215 * 359.97438 * 13 12 10 43 43 H 1.08006 * 120.09098 * 359.97438 * 15 14 13 44 44 H 1.07998 * 119.90978 * 180.23126 * 16 15 14 45 45 H 1.09002 * 109.46963 * 125.02640 * 18 17 16 46 46 H 0.96701 * 114.00195 * 179.97438 * 19 18 17 47 47 H 1.07995 * 119.91605 * 179.97438 * 24 17 16 48 48 H 1.08008 * 120.08379 * 179.97438 * 25 24 17 49 49 H 1.08009 * 125.83006 * 179.97438 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8781 1.5212 5 6 2.4841 -0.8783 -1.5210 6 7 1.9957 -0.1877 -2.7172 7 6 2.6260 0.8231 -3.3700 8 6 1.8453 1.1810 -4.4217 9 7 2.1288 2.1923 -5.3577 10 6 1.2631 2.4456 -6.3591 11 8 0.2358 1.7996 -6.4534 12 6 1.5584 3.4977 -7.3335 13 6 0.6923 3.7515 -8.3349 14 6 0.9894 4.8090 -9.3149 15 6 2.1663 5.5563 -9.2071 16 6 2.4401 6.5417 -10.1321 17 6 1.5484 6.7990 -11.1588 18 6 1.8522 7.8823 -12.1615 19 8 0.8835 8.9262 -12.0432 20 14 3.5516 8.5721 -11.8348 21 1 3.6003 9.1394 -10.4633 22 1 4.5583 7.4873 -11.9578 23 1 3.8512 9.6391 -12.8232 24 6 0.3789 6.0672 -11.2692 25 6 0.0934 5.0752 -10.3549 26 6 0.7054 0.3637 -4.4083 27 7 0.7988 -0.4563 -3.3931 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 2.1207 2.2704 0.8899 32 1 3.5740 1.7565 0.0005 33 1 2.1207 2.2703 -0.8901 34 1 2.1207 -1.9058 1.5213 35 1 3.5740 -0.8777 1.5215 36 1 2.1207 -0.3642 2.4111 37 1 3.5741 -0.8787 -1.5207 38 1 2.1208 -1.9060 -1.5210 39 1 3.5751 1.2627 -3.1010 40 1 2.9477 2.7068 -5.2827 41 1 2.4698 4.0712 -7.2495 42 1 -0.2193 3.1783 -8.4187 43 1 2.8608 5.3599 -8.4036 44 1 3.3505 7.1172 -10.0524 45 1 1.8165 7.4659 -13.1682 46 1 1.0177 9.6590 -12.6596 47 1 -0.3122 6.2741 -12.0728 48 1 -0.8198 4.5051 -10.4420 49 1 -0.1085 0.4022 -5.1172 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608520_12360594.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:13:09 Heat of formation + Delta-G solvation = 18.312987 kcal Electronic energy + Delta-G solvation = -27696.129661 eV Core-core repulsion = 23748.994376 eV Total energy + Delta-G solvation = -3947.135285 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 359.158 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.18342 -40.73975 -40.19737 -37.81052 -35.81555 -35.13262 -33.58591 -32.27747 -31.47952 -30.27511 -29.66533 -28.56496 -28.42651 -27.54985 -26.59305 -24.31546 -23.96141 -22.60929 -22.06908 -21.26299 -20.22896 -18.59483 -18.47575 -18.33684 -17.31040 -16.86846 -16.68356 -16.47119 -16.12580 -15.65934 -15.62551 -15.29677 -15.08754 -14.83646 -14.44883 -14.35013 -14.29647 -14.27823 -14.07877 -13.96114 -13.89977 -13.74768 -13.59429 -13.49681 -13.39679 -13.23150 -13.14813 -12.97047 -12.34245 -12.24675 -12.13773 -11.97480 -11.74012 -11.59445 -11.32233 -11.26858 -11.02144 -10.91553 -10.81568 -10.41204 -10.00384 -9.95677 -9.29906 -8.47787 -0.56678 0.36454 0.74034 0.99075 1.06777 1.34671 1.36661 1.42956 1.53076 1.69817 1.82872 1.89552 1.90693 2.31251 2.43518 2.49800 2.78769 3.31925 3.54901 3.68912 3.73030 3.79997 3.85660 3.92779 4.11718 4.13865 4.24588 4.31799 4.37322 4.50176 4.51134 4.57784 4.59999 4.62976 4.64796 4.71134 4.79007 4.79367 4.80000 4.82767 4.93402 5.06763 5.11063 5.27574 5.34320 5.37724 5.41636 5.46228 5.58417 5.59517 5.85736 5.99799 6.10019 6.49471 6.49636 6.88360 7.26862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.446 4.446 2 Si 1.019 2.981 3 C -0.450 4.450 4 C -0.449 4.449 5 C -0.168 4.168 6 N -0.345 5.345 7 C 0.013 3.987 8 C -0.004 4.004 9 N -0.638 5.638 10 C 0.550 3.450 11 O -0.533 6.533 12 C -0.215 4.215 13 C -0.009 4.009 14 C -0.075 4.075 15 C -0.094 4.094 16 C -0.126 4.126 17 C -0.062 4.062 18 C -0.085 4.085 19 O -0.544 6.544 20 Si 0.946 3.054 21 H -0.247 1.247 22 H -0.249 1.249 23 H -0.256 1.256 24 C -0.092 4.092 25 C -0.091 4.091 26 C 0.047 3.953 27 N -0.283 5.283 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.175 0.825 40 H 0.410 0.590 41 H 0.132 0.868 42 H 0.140 0.860 43 H 0.132 0.868 44 H 0.124 0.876 45 H 0.078 0.922 46 H 0.381 0.619 47 H 0.131 0.869 48 H 0.133 0.867 49 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.490 3.023 -0.028 6.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.554 4.554 2 Si 1.213 2.787 3 C -0.558 4.558 4 C -0.558 4.558 5 C -0.334 4.334 6 N -0.128 5.128 7 C -0.136 4.136 8 C -0.108 4.108 9 N -0.282 5.282 10 C 0.340 3.660 11 O -0.411 6.411 12 C -0.236 4.236 13 C -0.029 4.029 14 C -0.075 4.075 15 C -0.111 4.111 16 C -0.144 4.144 17 C -0.062 4.062 18 C -0.196 4.196 19 O -0.350 6.350 20 Si 0.768 3.232 21 H -0.171 1.171 22 H -0.173 1.173 23 H -0.180 1.180 24 C -0.110 4.110 25 C -0.109 4.109 26 C -0.139 4.139 27 N -0.106 5.106 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.116 0.884 38 H 0.123 0.877 39 H 0.193 0.807 40 H 0.245 0.755 41 H 0.150 0.850 42 H 0.158 0.842 43 H 0.150 0.850 44 H 0.141 0.859 45 H 0.096 0.904 46 H 0.229 0.771 47 H 0.149 0.851 48 H 0.151 0.849 49 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 4.890 1.469 1.223 5.250 hybrid contribution 0.834 1.127 -1.013 1.730 sum 5.724 2.596 0.209 6.289 Atomic orbital electron populations 1.26069 1.20046 1.04820 1.04510 0.79385 0.68135 0.67104 0.64093 1.26127 1.06107 1.18640 1.04891 1.26096 1.06368 1.08330 1.14992 1.26944 1.04404 1.05127 0.96950 1.47973 1.15786 1.26877 1.22120 1.21872 1.00209 0.95872 0.95608 1.17665 0.98527 0.98750 0.95871 1.42635 1.23986 1.35103 1.26507 1.18298 0.83031 0.83756 0.80892 1.90719 1.25945 1.50319 1.74102 1.22742 1.02457 1.00748 0.97604 1.22415 0.97949 0.92196 0.90294 1.19041 0.95493 0.96868 0.96133 1.21309 0.96384 0.94882 0.98561 1.20938 0.99653 0.98943 0.94819 1.19442 0.95439 0.95874 0.95479 1.24778 1.03998 0.90533 1.00242 1.86511 1.52718 1.32247 1.63490 0.85745 0.75106 0.80742 0.81577 1.17082 1.17252 1.18009 1.20972 0.96102 0.94634 0.99261 1.21457 0.98844 0.97078 0.93472 1.24495 0.98992 0.93244 0.97182 1.77452 1.01348 1.23197 1.08564 0.90980 0.91029 0.91232 0.90756 0.91137 0.91095 0.90855 0.90981 0.90579 0.88355 0.87724 0.80741 0.75453 0.85047 0.84246 0.85030 0.85863 0.90373 0.77121 0.85091 0.84897 0.77865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 -0.07 8.65 101.05 0.87 0.80 16 2 Si 1.02 -2.77 12.79 -169.99 -2.17 -4.94 16 3 C -0.45 0.90 8.65 101.05 0.87 1.77 16 4 C -0.45 1.19 8.65 101.05 0.87 2.07 16 5 C -0.17 0.25 5.59 59.85 0.33 0.59 16 6 N -0.34 -0.56 3.01 -9.16 -0.03 -0.59 16 7 C 0.01 0.01 11.44 -16.66 -0.19 -0.18 16 8 C 0.00 -0.01 6.90 -83.91 -0.58 -0.59 16 9 N -0.64 -0.23 5.47 -11.30 -0.06 -0.29 16 10 C 0.55 1.20 7.71 -12.97 -0.10 1.10 16 11 O -0.53 -2.97 13.38 5.17 0.07 -2.90 16 12 C -0.21 0.06 9.41 -37.51 -0.35 -0.29 16 13 C -0.01 0.00 9.46 -37.15 -0.35 -0.35 16 14 C -0.08 -0.03 5.87 -105.06 -0.62 -0.65 16 15 C -0.09 0.02 9.41 -39.11 -0.37 -0.35 16 16 C -0.13 -0.04 8.65 -39.65 -0.34 -0.39 16 17 C -0.06 -0.05 5.39 -104.50 -0.56 -0.61 16 18 C -0.09 0.08 2.79 36.01 0.10 0.18 16 19 O -0.54 0.16 12.81 -35.23 -0.45 -0.29 16 20 Si 0.95 -1.15 25.12 -169.99 -4.27 -5.42 16 21 H -0.25 -0.02 7.04 56.52 0.40 0.38 16 22 H -0.25 0.17 7.11 56.52 0.40 0.57 16 23 H -0.26 0.25 7.11 56.52 0.40 0.66 16 24 C -0.09 -0.05 9.66 -39.65 -0.38 -0.44 16 25 C -0.09 -0.02 9.80 -39.11 -0.38 -0.41 16 26 C 0.05 0.23 10.83 -17.22 -0.19 0.04 16 27 N -0.28 -1.34 12.56 30.71 0.39 -0.96 16 28 H 0.07 0.16 7.96 -51.93 -0.41 -0.26 16 29 H 0.07 0.03 7.96 -51.93 -0.41 -0.39 16 30 H 0.07 -0.02 7.96 -51.93 -0.41 -0.43 16 31 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 32 H 0.07 -0.20 7.96 -51.93 -0.41 -0.62 16 33 H 0.07 -0.06 7.96 -51.93 -0.41 -0.48 16 34 H 0.07 -0.19 7.96 -51.93 -0.41 -0.60 16 35 H 0.07 -0.23 7.96 -51.93 -0.41 -0.64 16 36 H 0.08 -0.18 7.96 -51.93 -0.41 -0.59 16 37 H 0.10 -0.37 7.96 -51.93 -0.41 -0.78 16 38 H 0.10 -0.15 7.96 -51.93 -0.41 -0.56 16 39 H 0.18 -0.57 8.06 -52.48 -0.42 -0.99 16 40 H 0.41 -1.35 8.80 -40.82 -0.36 -1.71 16 41 H 0.13 -0.42 6.07 -52.49 -0.32 -0.74 16 42 H 0.14 0.10 7.52 -52.48 -0.39 -0.29 16 43 H 0.13 -0.35 6.17 -52.48 -0.32 -0.67 16 44 H 0.12 -0.12 4.84 -52.49 -0.25 -0.37 16 45 H 0.08 -0.21 7.96 -51.93 -0.41 -0.62 16 46 H 0.38 -1.77 8.74 45.56 0.40 -1.38 16 47 H 0.13 -0.07 8.06 -52.49 -0.42 -0.50 16 48 H 0.13 -0.19 8.06 -52.48 -0.42 -0.61 16 49 H 0.21 1.15 5.91 -52.48 -0.31 0.84 16 LS Contribution 413.05 15.07 6.22 6.22 Total: 0.00 -9.94 413.05 -8.26 -18.20 By element: Atomic # 1 Polarization: -4.73 SS G_CDS: -6.59 Total: -11.33 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -1.36 Total: 2.29 kcal Atomic # 7 Polarization: -2.13 SS G_CDS: 0.30 Total: -1.83 kcal Atomic # 8 Polarization: -2.81 SS G_CDS: -0.38 Total: -3.19 kcal Atomic # 14 Polarization: -3.92 SS G_CDS: -6.44 Total: -10.37 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -9.94 -8.26 -18.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_12360594.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.513 kcal (2) G-P(sol) polarization free energy of solvation -9.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds