Wall clock time and date at job start Sun Mar 7 2021 10:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86303 * 109.47161 * 2 1 4 4 C 1.86299 * 109.47217 * 119.99499 * 2 1 3 5 5 C 1.86293 * 109.47364 * 239.99588 * 2 1 3 6 6 N 1.46505 * 109.46974 * 60.00146 * 5 2 1 7 7 C 1.35834 * 126.05371 * 90.00220 * 6 5 2 8 8 C 1.35777 * 107.55604 * 179.97438 * 7 6 5 9 9 N 1.40685 * 126.08141 * 179.97438 * 8 7 6 10 10 C 1.34775 * 119.99982 * 179.97438 * 9 8 7 11 11 O 1.21725 * 119.99722 * 0.02562 * 10 9 8 12 12 C 1.46409 * 120.00072 * 180.02562 * 10 9 8 13 13 C 1.34813 * 120.00187 * 180.02562 * 12 10 9 14 14 C 1.47212 * 120.00087 * 180.02562 * 13 12 10 15 15 C 1.39825 * 120.16741 * 359.72283 * 14 13 12 16 16 C 1.37899 * 119.82305 * 179.74434 * 15 14 13 17 17 C 1.38399 * 120.16897 * 0.52800 * 16 15 14 18 18 C 1.50702 * 119.82509 * 179.69674 * 17 16 15 19 19 O 1.42898 * 109.47226 * 245.02322 * 18 17 16 20 20 Si 1.86295 * 109.47238 * 5.02852 * 18 17 16 21 21 H 1.48498 * 109.46998 * 299.99627 * 20 18 17 22 22 H 1.48502 * 109.47205 * 59.99751 * 20 18 17 23 23 H 1.48494 * 109.47063 * 179.97438 * 20 18 17 24 24 C 1.38405 * 120.34735 * 359.72709 * 17 16 15 25 25 C 1.37892 * 120.16546 * 0.02562 * 24 17 16 26 26 C 1.40267 * 107.83348 * 0.02562 * 8 7 6 27 27 N 1.30832 * 108.33854 * 359.75391 * 26 8 7 28 28 H 1.09001 * 109.46570 * 60.00396 * 1 2 3 29 29 H 1.09001 * 109.47076 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47204 * 300.00331 * 1 2 3 31 31 H 1.09000 * 109.47332 * 59.99747 * 3 2 1 32 32 H 1.09002 * 109.47176 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.46801 * 299.99758 * 3 2 1 34 34 H 1.09001 * 109.47058 * 60.00032 * 4 2 1 35 35 H 1.09002 * 109.47782 * 180.02562 * 4 2 1 36 36 H 1.09000 * 109.47172 * 300.00189 * 4 2 1 37 37 H 1.09002 * 109.47236 * 180.02562 * 5 2 1 38 38 H 1.08998 * 109.47688 * 299.99834 * 5 2 1 39 39 H 1.08004 * 126.21750 * 359.93709 * 7 6 5 40 40 H 0.96997 * 120.00071 * 0.02562 * 9 8 7 41 41 H 1.08001 * 120.00015 * 359.97438 * 12 10 9 42 42 H 1.08005 * 120.00215 * 359.97438 * 13 12 10 43 43 H 1.08006 * 120.09098 * 359.97438 * 15 14 13 44 44 H 1.07998 * 119.90978 * 180.23126 * 16 15 14 45 45 H 1.09002 * 109.46963 * 125.02640 * 18 17 16 46 46 H 0.96701 * 114.00195 * 179.97438 * 19 18 17 47 47 H 1.07995 * 119.91605 * 179.97438 * 24 17 16 48 48 H 1.08008 * 120.08379 * 179.97438 * 25 24 17 49 49 H 1.08009 * 125.83006 * 179.97438 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8781 1.5212 5 6 2.4841 -0.8783 -1.5210 6 7 1.9957 -0.1877 -2.7172 7 6 2.6260 0.8231 -3.3700 8 6 1.8453 1.1810 -4.4217 9 7 2.1288 2.1923 -5.3577 10 6 1.2631 2.4456 -6.3591 11 8 0.2358 1.7996 -6.4534 12 6 1.5584 3.4977 -7.3335 13 6 0.6923 3.7515 -8.3349 14 6 0.9894 4.8090 -9.3149 15 6 2.1663 5.5563 -9.2071 16 6 2.4401 6.5417 -10.1321 17 6 1.5484 6.7990 -11.1588 18 6 1.8522 7.8823 -12.1615 19 8 0.8835 8.9262 -12.0432 20 14 3.5516 8.5721 -11.8348 21 1 3.6003 9.1394 -10.4633 22 1 4.5583 7.4873 -11.9578 23 1 3.8512 9.6391 -12.8232 24 6 0.3789 6.0672 -11.2692 25 6 0.0934 5.0752 -10.3549 26 6 0.7054 0.3637 -4.4083 27 7 0.7988 -0.4563 -3.3931 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 2.1207 2.2704 0.8899 32 1 3.5740 1.7565 0.0005 33 1 2.1207 2.2703 -0.8901 34 1 2.1207 -1.9058 1.5213 35 1 3.5740 -0.8777 1.5215 36 1 2.1207 -0.3642 2.4111 37 1 3.5741 -0.8787 -1.5207 38 1 2.1208 -1.9060 -1.5210 39 1 3.5751 1.2627 -3.1010 40 1 2.9477 2.7068 -5.2827 41 1 2.4698 4.0712 -7.2495 42 1 -0.2193 3.1783 -8.4187 43 1 2.8608 5.3599 -8.4036 44 1 3.3505 7.1172 -10.0524 45 1 1.8165 7.4659 -13.1682 46 1 1.0177 9.6590 -12.6596 47 1 -0.3122 6.2741 -12.0728 48 1 -0.8198 4.5051 -10.4420 49 1 -0.1085 0.4022 -5.1172 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_12360594.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:13:08 Heat of formation + Delta-G solvation = 21.498407 kcal Electronic energy + Delta-G solvation = -27695.991531 eV Core-core repulsion = 23748.994376 eV Total energy + Delta-G solvation = -3946.997155 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 359.158 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.31500 -40.75825 -40.27617 -37.72512 -35.92478 -35.15858 -33.67163 -32.24178 -31.47956 -30.34143 -29.52391 -28.38334 -28.34444 -27.52434 -26.58514 -24.32893 -23.94995 -22.68770 -22.09925 -21.37231 -20.27278 -18.53835 -18.46858 -18.37074 -17.29591 -16.89425 -16.66625 -16.56213 -16.09149 -15.77242 -15.61940 -15.26899 -15.18213 -14.85073 -14.37954 -14.25465 -14.18959 -14.15791 -14.03342 -13.91465 -13.83105 -13.81798 -13.52880 -13.41269 -13.21228 -13.14456 -13.02756 -12.96451 -12.29017 -12.18508 -12.15901 -11.89998 -11.76079 -11.67829 -11.36024 -11.30894 -11.00688 -10.85241 -10.80888 -10.29593 -10.02404 -9.97583 -9.29028 -8.57120 -0.56630 0.39400 0.70381 0.94784 1.17634 1.37828 1.47535 1.52822 1.67131 1.71123 1.87148 1.91688 2.04429 2.27686 2.40782 2.57440 2.80611 3.45023 3.57830 3.74810 3.76606 3.89517 3.95109 3.99527 4.15780 4.22213 4.30313 4.34084 4.40774 4.57909 4.58565 4.68266 4.70364 4.73486 4.74670 4.82650 4.83562 4.83896 4.87114 4.88439 4.98263 5.09905 5.12090 5.19613 5.39381 5.49145 5.50649 5.59829 5.59937 5.65545 5.79560 5.90322 6.09465 6.49789 6.71298 6.81066 7.21477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.476 4.476 2 Si 1.093 2.907 3 C -0.458 4.458 4 C -0.454 4.454 5 C -0.190 4.190 6 N -0.340 5.340 7 C 0.032 3.968 8 C -0.025 4.025 9 N -0.622 5.622 10 C 0.540 3.460 11 O -0.577 6.577 12 C -0.205 4.205 13 C -0.015 4.015 14 C -0.083 4.083 15 C -0.095 4.095 16 C -0.139 4.139 17 C -0.077 4.077 18 C -0.088 4.088 19 O -0.563 6.563 20 Si 0.979 3.021 21 H -0.267 1.267 22 H -0.255 1.255 23 H -0.258 1.258 24 C -0.104 4.104 25 C -0.101 4.101 26 C 0.021 3.979 27 N -0.320 5.320 28 H 0.045 0.955 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.132 0.868 38 H 0.102 0.898 39 H 0.221 0.779 40 H 0.430 0.570 41 H 0.166 0.834 42 H 0.126 0.874 43 H 0.158 0.842 44 H 0.134 0.866 45 H 0.095 0.905 46 H 0.398 0.602 47 H 0.137 0.863 48 H 0.141 0.859 49 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.561 3.753 0.862 9.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.580 4.580 2 Si 1.283 2.717 3 C -0.566 4.566 4 C -0.563 4.563 5 C -0.353 4.353 6 N -0.123 5.123 7 C -0.117 4.117 8 C -0.130 4.130 9 N -0.268 5.268 10 C 0.332 3.668 11 O -0.458 6.458 12 C -0.225 4.225 13 C -0.035 4.035 14 C -0.083 4.083 15 C -0.112 4.112 16 C -0.156 4.156 17 C -0.078 4.078 18 C -0.198 4.198 19 O -0.372 6.372 20 Si 0.803 3.197 21 H -0.192 1.192 22 H -0.179 1.179 23 H -0.183 1.183 24 C -0.122 4.122 25 C -0.119 4.119 26 C -0.164 4.164 27 N -0.144 5.144 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.151 0.849 38 H 0.121 0.879 39 H 0.238 0.762 40 H 0.269 0.731 41 H 0.184 0.816 42 H 0.144 0.856 43 H 0.175 0.825 44 H 0.152 0.848 45 H 0.113 0.887 46 H 0.249 0.751 47 H 0.155 0.845 48 H 0.159 0.841 49 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 7.947 2.213 2.098 8.512 hybrid contribution -0.156 0.871 -1.214 1.502 sum 7.791 3.084 0.884 8.426 Atomic orbital electron populations 1.26516 1.24461 1.03821 1.03160 0.78279 0.63996 0.66286 0.63175 1.26221 1.07455 1.18641 1.04297 1.26128 1.07342 1.08220 1.14577 1.27401 1.06648 1.05120 0.96160 1.48291 1.14781 1.26915 1.22300 1.22556 1.00812 0.94458 0.93903 1.17829 0.98375 0.99510 0.97289 1.42503 1.24321 1.34512 1.25449 1.18772 0.82671 0.83904 0.81484 1.90714 1.27884 1.51996 1.75223 1.22850 1.03405 0.99943 0.96322 1.22363 0.97887 0.92405 0.90878 1.19102 0.96001 0.97077 0.96164 1.21611 0.96396 0.94230 0.99003 1.21171 1.00124 0.99377 0.94968 1.19765 0.95568 0.96364 0.96063 1.24859 1.03940 0.90215 1.00741 1.86462 1.53158 1.33104 1.64511 0.85269 0.74419 0.79912 0.80059 1.19213 1.17941 1.18256 1.21126 0.96518 0.94921 0.99680 1.21664 0.99358 0.97249 0.93601 1.24325 0.99864 0.94762 0.97476 1.77374 1.03452 1.24211 1.09368 0.93602 0.91889 0.91225 0.90975 0.89234 0.92143 0.90915 0.89566 0.90695 0.84940 0.87946 0.76218 0.73146 0.81644 0.85579 0.82501 0.84843 0.88700 0.75143 0.84528 0.84101 0.80061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 -0.98 8.65 113.37 0.98 0.00 16 2 Si 1.09 -7.00 12.79 68.60 0.88 -6.12 16 3 C -0.46 2.66 8.65 113.37 0.98 3.64 16 4 C -0.45 3.23 8.65 113.37 0.98 4.22 16 5 C -0.19 0.85 5.59 127.77 0.71 1.56 16 6 N -0.34 -1.00 3.01 -182.89 -0.55 -1.55 16 7 C 0.03 -0.02 11.44 83.50 0.96 0.94 16 8 C -0.03 -0.14 6.90 37.64 0.26 0.12 16 9 N -0.62 -0.33 5.47 -307.86 -1.68 -2.01 16 10 C 0.54 2.92 7.71 86.37 0.67 3.59 16 11 O -0.58 -8.15 13.38 -4.43 -0.06 -8.21 16 12 C -0.20 0.14 9.41 23.61 0.22 0.36 16 13 C -0.02 -0.03 9.46 23.84 0.23 0.20 16 14 C -0.08 -0.11 5.87 -20.15 -0.12 -0.22 16 15 C -0.09 0.09 9.41 22.57 0.21 0.31 16 16 C -0.14 -0.06 8.65 22.23 0.19 0.13 16 17 C -0.08 -0.13 5.39 -19.79 -0.11 -0.24 16 18 C -0.09 0.18 2.79 71.24 0.20 0.38 16 19 O -0.56 0.37 12.81 -148.98 -1.91 -1.53 16 20 Si 0.98 -2.73 25.12 68.60 1.72 -1.01 16 21 H -0.27 -0.09 7.04 99.48 0.70 0.61 16 22 H -0.26 0.49 7.11 99.48 0.71 1.19 16 23 H -0.26 0.68 7.11 99.48 0.71 1.39 16 24 C -0.10 -0.20 9.66 22.23 0.21 0.02 16 25 C -0.10 -0.16 9.80 22.57 0.22 0.06 16 26 C 0.02 0.25 10.83 85.34 0.92 1.18 16 27 N -0.32 -3.69 12.56 -56.76 -0.71 -4.41 16 28 H 0.04 0.33 7.96 -2.39 -0.02 0.31 16 29 H 0.06 0.19 7.96 -2.39 -0.02 0.17 16 30 H 0.07 0.08 7.96 -2.39 -0.02 0.06 16 31 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 32 H 0.09 -0.83 7.96 -2.39 -0.02 -0.85 16 33 H 0.06 -0.19 7.96 -2.38 -0.02 -0.20 16 34 H 0.07 -0.47 7.96 -2.39 -0.02 -0.49 16 35 H 0.09 -0.80 7.96 -2.39 -0.02 -0.82 16 36 H 0.07 -0.46 7.96 -2.39 -0.02 -0.48 16 37 H 0.13 -1.46 7.96 -2.39 -0.02 -1.48 16 38 H 0.10 -0.35 7.96 -2.39 -0.02 -0.37 16 39 H 0.22 -2.34 8.06 -2.91 -0.02 -2.36 16 40 H 0.43 -3.58 8.80 -92.71 -0.82 -4.39 16 41 H 0.17 -1.39 6.07 -2.91 -0.02 -1.41 16 42 H 0.13 0.51 7.52 -2.91 -0.02 0.49 16 43 H 0.16 -1.14 6.17 -2.91 -0.02 -1.15 16 44 H 0.13 -0.32 4.84 -2.91 -0.01 -0.34 16 45 H 0.10 -0.56 7.96 -2.39 -0.02 -0.58 16 46 H 0.40 -3.82 8.74 -74.06 -0.65 -4.47 16 47 H 0.14 -0.04 8.06 -2.91 -0.02 -0.06 16 48 H 0.14 -0.17 8.06 -2.91 -0.02 -0.20 16 49 H 0.18 2.90 5.91 -2.91 -0.02 2.88 16 Total: 0.00 -27.17 413.05 5.67 -21.49 By element: Atomic # 1 Polarization: -13.17 SS G_CDS: 0.26 Total: -12.91 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: 7.72 Total: 16.25 kcal Atomic # 7 Polarization: -5.02 SS G_CDS: -2.95 Total: -7.96 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: -1.97 Total: -9.74 kcal Atomic # 14 Polarization: -9.72 SS G_CDS: 2.60 Total: -7.12 kcal Total: -27.17 5.67 -21.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_12360594.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.992 kcal (2) G-P(sol) polarization free energy of solvation -27.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds