Wall clock time and date at job start Sun Mar 7 2021 10:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86296 * 1 3 3 C 1.86300 * 109.47099 * 2 1 4 4 C 1.86302 * 109.47310 * 239.99782 * 2 1 3 5 5 C 1.86301 * 109.46950 * 119.99796 * 2 1 3 6 6 N 1.46496 * 109.47207 * 60.00380 * 5 2 1 7 7 C 1.35821 * 126.05725 * 89.99467 * 6 5 2 8 8 C 1.35774 * 107.56249 * 180.02562 * 7 6 5 9 9 N 1.40706 * 126.08402 * 179.97438 * 8 7 6 10 10 C 1.34770 * 120.00066 * 180.02562 * 9 8 7 11 11 O 1.21598 * 120.00068 * 359.97438 * 10 9 8 12 12 C 1.47684 * 120.00395 * 179.97438 * 10 9 8 13 13 C 1.39625 * 120.14865 * 359.97438 * 12 10 9 14 14 C 1.38114 * 119.84879 * 180.02562 * 13 12 10 15 15 F 1.35092 * 119.92020 * 179.97438 * 14 13 12 16 16 C 1.38618 * 120.16603 * 0.02562 * 14 13 12 17 17 C 1.50695 * 119.84307 * 179.97438 * 16 14 13 18 18 O 1.42901 * 109.46998 * 74.97975 * 17 16 14 19 19 Si 1.86294 * 109.47125 * 314.98020 * 17 16 14 20 20 H 1.48500 * 109.47358 * 60.00360 * 19 17 16 21 21 H 1.48501 * 109.47141 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47351 * 299.99987 * 19 17 16 23 23 C 1.38238 * 120.31200 * 359.95859 * 16 14 13 24 24 C 1.38261 * 120.14778 * 0.04450 * 23 16 14 25 25 F 1.35101 * 120.08351 * 179.97438 * 24 23 16 26 26 C 1.40273 * 107.83262 * 0.24416 * 8 7 6 27 27 N 1.30830 * 108.33496 * 359.58991 * 26 8 7 28 28 H 1.09002 * 109.47616 * 300.00481 * 1 2 3 29 29 H 1.09003 * 109.47106 * 59.99970 * 1 2 3 30 30 H 1.08999 * 109.47089 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47185 * 179.97438 * 3 2 1 32 32 H 1.09004 * 109.47203 * 299.99437 * 3 2 1 33 33 H 1.08999 * 109.47388 * 60.00072 * 3 2 1 34 34 H 1.09000 * 109.46786 * 300.00423 * 4 2 1 35 35 H 1.09003 * 109.46834 * 60.00081 * 4 2 1 36 36 H 1.08999 * 109.46981 * 179.97438 * 4 2 1 37 37 H 1.08999 * 109.47301 * 299.99783 * 5 2 1 38 38 H 1.09007 * 109.46908 * 180.02562 * 5 2 1 39 39 H 1.08001 * 126.22072 * 0.02729 * 7 6 5 40 40 H 0.97004 * 119.99840 * 359.97438 * 9 8 7 41 41 H 1.07993 * 120.07566 * 359.74455 * 13 12 10 42 42 H 1.09004 * 109.46904 * 194.97899 * 17 16 14 43 43 H 0.96696 * 114.00451 * 300.00063 * 18 17 16 44 44 H 1.07998 * 119.92305 * 180.02562 * 23 16 14 45 45 H 1.07992 * 125.82767 * 179.75853 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4839 -0.8782 1.5212 6 7 1.9957 -2.2594 1.5212 7 6 2.6257 -3.3300 0.9722 8 6 1.8447 -4.4196 1.1870 9 7 2.1280 -5.7360 0.7786 10 6 1.2614 -6.7295 1.0580 11 8 0.2347 -6.4885 1.6635 12 6 1.5584 -8.1111 0.6289 13 6 2.7360 -8.3913 -0.0669 14 6 3.0074 -9.6855 -0.4657 15 9 4.1461 -9.9582 -1.1395 16 6 2.1137 -10.7052 -0.1773 17 6 2.4168 -12.1145 -0.6164 18 8 3.4259 -12.6702 0.2292 19 14 3.0221 -12.0994 -2.3782 20 1 4.2545 -11.2762 -2.4712 21 1 3.3202 -13.4883 -2.8111 22 1 1.9735 -11.5219 -3.2569 23 6 0.9460 -10.4353 0.5115 24 6 0.6613 -9.1445 0.9169 25 9 -0.4806 -8.8821 1.5895 26 6 0.7020 -3.9985 1.8831 27 7 0.7959 -2.7096 2.0869 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.5740 1.7565 0.0005 32 1 2.1207 2.2703 -0.8901 33 1 2.1207 2.2703 0.8900 34 1 2.1206 -1.9059 -1.5211 35 1 2.1207 -0.3644 -2.4111 36 1 3.5740 -0.8779 -1.5213 37 1 2.1206 -0.3643 2.4112 38 1 3.5740 -0.8778 1.5214 39 1 3.5755 -3.3171 0.4581 40 1 2.9468 -5.9282 0.2953 41 1 3.4309 -7.5973 -0.2967 42 1 1.5122 -12.7188 -0.5481 43 1 4.2607 -12.1823 0.2185 44 1 0.2543 -11.2346 0.7333 45 1 -0.1144 -4.6308 2.1994 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_12360598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:13:21 Heat of formation + Delta-G solvation = -68.186613 kcal Electronic energy + Delta-G solvation = -30651.142576 eV Core-core repulsion = 26045.112194 eV Total energy + Delta-G solvation = -4606.030381 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 369.123 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -50.45116 -50.09008 -42.41535 -41.08703 -39.78735 -37.65253 -36.09128 -33.92280 -33.13801 -31.35578 -30.47349 -29.52636 -28.37860 -28.35155 -27.98202 -26.74307 -24.53075 -24.05442 -22.77325 -22.13715 -21.32755 -19.45587 -19.17742 -18.62727 -18.24051 -17.75943 -17.56800 -17.17770 -16.78430 -16.63594 -16.49708 -16.09056 -15.95280 -15.79838 -15.60409 -15.16316 -15.05497 -14.59634 -14.54982 -14.19123 -14.15183 -14.03792 -13.99273 -13.84473 -13.82680 -13.42344 -13.35209 -13.21206 -13.14022 -13.02216 -13.01595 -12.47396 -12.23719 -12.16147 -11.77782 -11.40670 -11.37883 -11.09916 -10.84874 -10.80318 -10.76624 -10.32111 -10.05114 -9.81905 -8.66745 -0.82411 -0.27743 0.74939 1.06980 1.26915 1.32342 1.48956 1.53154 1.66241 1.85217 1.85791 1.89771 1.97145 2.14681 2.35880 2.57846 2.79912 2.86091 3.13130 3.31523 3.48032 3.55830 3.73510 3.83043 3.97980 4.20196 4.27006 4.33747 4.37542 4.52508 4.66786 4.68203 4.70612 4.72393 4.74557 4.75338 4.83363 4.84636 4.84747 4.87221 4.88852 5.01187 5.40230 5.51317 5.60919 5.65754 5.72116 6.05339 6.29118 6.55791 6.65838 6.99724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.476 4.476 2 Si 1.096 2.904 3 C -0.456 4.456 4 C -0.458 4.458 5 C -0.190 4.190 6 N -0.339 5.339 7 C 0.039 3.961 8 C -0.027 4.027 9 N -0.616 5.616 10 C 0.554 3.446 11 O -0.549 6.549 12 C -0.148 4.148 13 C -0.072 4.072 14 C 0.076 3.924 15 F -0.117 7.117 16 C -0.092 4.092 17 C -0.082 4.082 18 O -0.542 6.542 19 Si 0.966 3.034 20 H -0.227 1.227 21 H -0.272 1.272 22 H -0.262 1.262 23 C -0.109 4.109 24 C 0.136 3.864 25 F -0.127 7.127 26 C 0.023 3.977 27 N -0.318 5.318 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.045 0.955 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.134 0.866 39 H 0.225 0.775 40 H 0.428 0.572 41 H 0.187 0.813 42 H 0.143 0.857 43 H 0.389 0.611 44 H 0.176 0.824 45 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.600 1.818 -5.151 10.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.580 4.580 2 Si 1.285 2.715 3 C -0.564 4.564 4 C -0.566 4.566 5 C -0.354 4.354 6 N -0.121 5.121 7 C -0.110 4.110 8 C -0.132 4.132 9 N -0.263 5.263 10 C 0.342 3.658 11 O -0.427 6.427 12 C -0.153 4.153 13 C -0.091 4.091 14 C 0.056 3.944 15 F -0.095 7.095 16 C -0.094 4.094 17 C -0.192 4.192 18 O -0.349 6.349 19 Si 0.788 3.212 20 H -0.149 1.149 21 H -0.197 1.197 22 H -0.186 1.186 23 C -0.127 4.127 24 C 0.115 3.885 25 F -0.105 7.105 26 C -0.162 4.162 27 N -0.142 5.142 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.104 0.896 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.121 0.879 38 H 0.153 0.847 39 H 0.241 0.759 40 H 0.268 0.732 41 H 0.204 0.796 42 H 0.160 0.840 43 H 0.239 0.761 44 H 0.193 0.807 45 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 7.202 2.699 -4.887 9.112 hybrid contribution 0.199 -0.550 0.215 0.623 sum 7.401 2.149 -4.672 9.012 Atomic orbital electron populations 1.26531 1.24558 1.03014 1.03927 0.78247 0.63881 0.65847 0.63563 1.26151 1.07349 1.17939 1.04975 1.26211 1.07508 1.07682 1.15172 1.27411 1.06757 0.81674 1.19508 1.48313 1.14606 1.07751 1.41408 1.22581 1.00758 0.84970 1.02728 1.17730 0.98596 0.85650 1.11199 1.42360 1.23933 1.03771 1.56221 1.18093 0.83262 0.84788 0.79625 1.90771 1.27096 1.83496 1.41369 1.19644 0.97309 0.92487 1.05845 1.21355 0.95705 0.96751 0.95276 1.17407 0.84914 0.93608 0.98464 1.91626 1.47394 1.93736 1.76775 1.20536 0.94017 0.97023 0.97780 1.25112 0.97303 0.90680 1.06092 1.86572 1.25477 1.55304 1.67548 0.85713 0.82088 0.80203 0.73203 1.14937 1.19746 1.18639 1.21095 0.98312 0.95161 0.98179 1.17988 0.82931 0.93661 0.93920 1.91600 1.47152 1.94706 1.77039 1.24304 0.99727 0.92082 1.00077 1.77409 1.03260 1.12356 1.21189 0.91962 0.91306 0.93537 0.89572 0.90770 0.91003 0.91994 0.91028 0.89142 0.87915 0.84748 0.75866 0.73190 0.79628 0.83967 0.76141 0.80674 0.80160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 -0.55 8.65 113.37 0.98 0.43 16 2 Si 1.10 -8.26 12.79 68.60 0.88 -7.38 16 3 C -0.46 3.57 8.65 113.37 0.98 4.55 16 4 C -0.46 3.31 8.65 113.37 0.98 4.29 16 5 C -0.19 1.11 5.59 127.77 0.71 1.83 16 6 N -0.34 -0.44 3.01 -182.91 -0.55 -0.99 16 7 C 0.04 -0.10 11.44 83.50 0.96 0.86 16 8 C -0.03 -0.10 6.90 37.64 0.26 0.16 16 9 N -0.62 0.62 5.42 -306.76 -1.66 -1.04 16 10 C 0.55 2.90 7.74 86.74 0.67 3.57 16 11 O -0.55 -7.81 12.49 -4.02 -0.05 -7.86 16 12 C -0.15 -0.08 5.88 -20.06 -0.12 -0.20 16 13 C -0.07 0.45 9.52 22.58 0.21 0.66 16 14 C 0.08 -0.37 6.60 22.33 0.15 -0.23 16 15 F -0.12 0.60 12.55 44.97 0.56 1.17 16 16 C -0.09 0.36 4.79 -19.78 -0.09 0.26 16 17 C -0.08 0.41 2.80 71.23 0.20 0.61 16 18 O -0.54 1.55 12.88 -148.98 -1.92 -0.37 16 19 Si 0.97 -3.41 26.08 68.60 1.79 -1.62 16 20 H -0.23 0.82 5.28 99.48 0.53 1.35 16 21 H -0.27 -0.07 7.11 99.48 0.71 0.64 16 22 H -0.26 0.36 7.11 99.48 0.71 1.07 16 23 C -0.11 0.24 9.63 22.28 0.21 0.46 16 24 C 0.14 0.42 7.28 22.66 0.17 0.58 16 25 F -0.13 -1.23 15.55 44.97 0.70 -0.53 16 26 C 0.02 0.25 10.84 85.34 0.92 1.18 16 27 N -0.32 -3.23 12.56 -56.76 -0.71 -3.94 16 28 H 0.06 0.15 7.96 -2.39 -0.02 0.13 16 29 H 0.07 0.03 7.96 -2.39 -0.02 0.01 16 30 H 0.05 0.29 7.96 -2.39 -0.02 0.27 16 31 H 0.09 -0.87 7.96 -2.38 -0.02 -0.88 16 32 H 0.07 -0.50 7.96 -2.39 -0.02 -0.52 16 33 H 0.07 -0.50 7.96 -2.39 -0.02 -0.52 16 34 H 0.06 -0.30 7.96 -2.39 -0.02 -0.32 16 35 H 0.07 -0.43 7.96 -2.39 -0.02 -0.45 16 36 H 0.09 -0.97 7.96 -2.39 -0.02 -0.99 16 37 H 0.10 -0.47 7.96 -2.39 -0.02 -0.49 16 38 H 0.13 -1.69 7.96 -2.38 -0.02 -1.71 16 39 H 0.22 -2.92 8.06 -2.91 -0.02 -2.95 16 40 H 0.43 -4.39 6.86 -92.71 -0.64 -5.02 16 41 H 0.19 -2.62 6.40 -2.91 -0.02 -2.64 16 42 H 0.14 -1.14 7.76 -2.39 -0.02 -1.16 16 43 H 0.39 -3.37 8.39 -74.06 -0.62 -3.99 16 44 H 0.18 -1.08 7.99 -2.91 -0.02 -1.10 16 45 H 0.18 2.70 5.91 -2.91 -0.02 2.68 16 Total: 0.00 -26.76 386.76 6.60 -20.15 By element: Atomic # 1 Polarization: -16.98 SS G_CDS: 0.37 Total: -16.60 kcal Atomic # 6 Polarization: 11.81 SS G_CDS: 7.20 Total: 19.01 kcal Atomic # 7 Polarization: -3.04 SS G_CDS: -2.93 Total: -5.97 kcal Atomic # 8 Polarization: -6.25 SS G_CDS: -1.97 Total: -8.22 kcal Atomic # 9 Polarization: -0.62 SS G_CDS: 1.26 Total: 0.64 kcal Atomic # 14 Polarization: -11.67 SS G_CDS: 2.67 Total: -9.01 kcal Total: -26.76 6.60 -20.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_12360598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.033 kcal (2) G-P(sol) polarization free energy of solvation -26.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds