Wall clock time and date at job start Sun Mar 7 2021 10:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86304 * 1 3 3 C 1.86295 * 109.47135 * 2 1 4 4 C 1.86305 * 109.46987 * 239.99714 * 2 1 3 5 5 C 1.86304 * 109.47057 * 120.00190 * 2 1 3 6 6 N 1.46500 * 109.47119 * 60.00013 * 5 2 1 7 7 C 1.35824 * 126.05723 * 89.99891 * 6 5 2 8 8 C 1.35770 * 107.56270 * 179.97438 * 7 6 5 9 9 N 1.40707 * 126.08301 * 179.97438 * 8 7 6 10 10 C 1.34770 * 119.99797 * 180.02562 * 9 8 7 11 11 O 1.21589 * 120.00464 * 0.02562 * 10 9 8 12 12 C 1.47713 * 119.99689 * 180.02562 * 10 9 8 13 13 C 1.39637 * 120.12000 * 359.97438 * 12 10 9 14 14 C 1.37862 * 119.87727 * 180.02562 * 13 12 10 15 15 C 1.38632 * 120.11928 * 0.02648 * 14 13 12 16 16 F 1.35095 * 119.87660 * 179.97438 * 15 14 13 17 17 C 1.38676 * 120.24152 * 359.97153 * 15 14 13 18 18 C 1.50699 * 119.93931 * 180.02562 * 17 15 14 19 19 O 1.42903 * 109.47294 * 195.00522 * 18 17 15 20 20 Si 1.86301 * 109.47146 * 315.00478 * 18 17 15 21 21 H 1.48506 * 109.47302 * 299.99754 * 20 18 17 22 22 H 1.48503 * 109.47334 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47376 * 59.99883 * 20 18 17 24 24 C 1.37811 * 120.12006 * 0.27955 * 17 15 14 25 25 C 1.40272 * 107.83234 * 0.26590 * 8 7 6 26 26 N 1.30827 * 108.33578 * 359.55299 * 25 8 7 27 27 H 1.08997 * 109.46775 * 299.99814 * 1 2 3 28 28 H 1.08996 * 109.46503 * 60.00231 * 1 2 3 29 29 H 1.08997 * 109.46931 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46763 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47483 * 299.99807 * 3 2 1 32 32 H 1.08997 * 109.47138 * 60.00408 * 3 2 1 33 33 H 1.08993 * 109.47580 * 300.00301 * 4 2 1 34 34 H 1.09005 * 109.46871 * 60.00642 * 4 2 1 35 35 H 1.09000 * 109.46891 * 179.97438 * 4 2 1 36 36 H 1.08995 * 109.46796 * 300.00194 * 5 2 1 37 37 H 1.08992 * 109.47044 * 179.97438 * 5 2 1 38 38 H 1.07995 * 126.21411 * 0.02562 * 7 6 5 39 39 H 0.97002 * 119.99993 * 0.02562 * 9 8 7 40 40 H 1.07998 * 120.05746 * 359.97438 * 13 12 10 41 41 H 1.07997 * 119.93797 * 180.02562 * 14 13 12 42 42 H 1.09002 * 109.47485 * 75.00431 * 18 17 15 43 43 H 0.96699 * 113.99816 * 179.97438 * 19 18 17 44 44 H 1.08005 * 120.06167 * 179.70226 * 24 17 15 45 45 H 1.07999 * 125.82630 * 179.73366 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4840 -0.8783 1.5211 6 7 1.9957 -2.2595 1.5211 7 6 2.6257 -3.3302 0.9720 8 6 1.8452 -4.4199 1.1878 9 7 2.1287 -5.7363 0.7797 10 6 1.2625 -6.7300 1.0601 11 8 0.2358 -6.4890 1.6653 12 6 1.5604 -8.1120 0.6322 13 6 2.7385 -8.3916 -0.0634 14 6 3.0113 -9.6832 -0.4609 15 6 2.1183 -10.7034 -0.1716 16 9 2.3903 -11.9672 -0.5639 17 6 0.9469 -10.4313 0.5189 18 6 -0.0188 -11.5456 0.8302 19 8 -1.2768 -10.9908 1.2196 20 14 -0.2501 -12.6077 -0.6828 21 1 -0.7903 -11.7797 -1.7910 22 1 -1.2013 -13.7061 -0.3758 23 1 1.0572 -13.1843 -1.0875 24 6 0.6618 -9.1429 0.9164 25 6 0.7026 -3.9988 1.8841 26 7 0.7965 -2.7099 2.0878 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.5741 1.7563 0.0005 31 1 2.1208 2.2703 -0.8899 32 1 2.1208 2.2702 0.8900 33 1 2.1207 -1.9059 -1.5212 34 1 2.1207 -0.3644 -2.4112 35 1 3.5740 -0.8779 -1.5214 36 1 2.1207 -0.3645 2.4111 37 1 3.5740 -0.8787 1.5209 38 1 3.5754 -3.3172 0.4580 39 1 2.9476 -5.9286 0.2966 40 1 3.4342 -7.5974 -0.2903 41 1 3.9223 -9.9006 -0.9986 42 1 0.3776 -12.1533 1.6436 43 1 -1.9486 -11.6521 1.4349 44 1 -0.2531 -8.9313 1.4500 45 1 -0.1136 -4.6312 2.2007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_12496548.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:17:05 Heat of formation + Delta-G solvation = -27.412717 kcal Electronic energy + Delta-G solvation = -27928.183729 eV Core-core repulsion = 23793.375412 eV Total energy + Delta-G solvation = -4134.808317 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 351.133 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -50.38185 -42.37684 -41.13231 -39.55590 -37.66928 -36.02297 -33.79406 -32.91444 -32.02296 -30.30441 -29.50240 -28.36833 -28.32158 -27.27212 -26.83509 -25.05808 -23.25987 -22.70502 -22.03773 -20.90476 -19.29151 -18.74807 -18.47592 -18.11301 -17.47795 -17.04469 -16.62178 -16.59423 -16.20000 -15.99401 -15.87631 -15.35788 -15.13141 -15.01311 -14.84001 -14.24887 -14.17942 -14.14331 -14.07178 -14.02204 -13.81850 -13.80778 -13.40320 -13.24977 -13.20228 -13.12688 -13.00933 -12.79156 -12.43780 -12.18748 -11.93998 -11.74771 -11.40622 -11.36945 -11.08335 -10.90096 -10.83735 -10.79032 -10.05259 -10.00818 -9.65287 -8.61215 -0.52676 0.05706 0.79358 1.10007 1.35441 1.39202 1.43641 1.49168 1.68420 1.88152 1.88884 1.98720 2.04397 2.20412 2.59073 2.65214 2.94657 3.13274 3.47584 3.57702 3.76723 3.79612 3.99086 4.05859 4.20869 4.28719 4.37095 4.53605 4.66535 4.69927 4.71918 4.74249 4.76297 4.84229 4.84493 4.85953 4.88262 4.89964 4.91980 5.05207 5.11928 5.13688 5.52334 5.62020 5.62961 5.66945 5.77471 6.09351 6.41207 6.70181 6.72921 7.11582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.476 4.476 2 Si 1.095 2.905 3 C -0.455 4.455 4 C -0.458 4.458 5 C -0.189 4.189 6 N -0.340 5.340 7 C 0.036 3.964 8 C -0.026 4.026 9 N -0.619 5.619 10 C 0.557 3.443 11 O -0.562 6.562 12 C -0.151 4.151 13 C -0.045 4.045 14 C -0.144 4.144 15 C 0.103 3.897 16 F -0.126 7.126 17 C -0.132 4.132 18 C -0.081 4.081 19 O -0.560 6.560 20 Si 0.966 3.034 21 H -0.280 1.280 22 H -0.252 1.252 23 H -0.234 1.234 24 C -0.022 4.022 25 C 0.021 3.979 26 N -0.319 5.319 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.045 0.955 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.134 0.866 38 H 0.224 0.776 39 H 0.428 0.572 40 H 0.179 0.821 41 H 0.178 0.822 42 H 0.104 0.896 43 H 0.403 0.597 44 H 0.136 0.864 45 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.832 0.978 -3.792 9.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.580 4.580 2 Si 1.285 2.715 3 C -0.564 4.564 4 C -0.566 4.566 5 C -0.353 4.353 6 N -0.122 5.122 7 C -0.113 4.113 8 C -0.130 4.130 9 N -0.266 5.266 10 C 0.346 3.654 11 O -0.442 6.442 12 C -0.154 4.154 13 C -0.064 4.064 14 C -0.163 4.163 15 C 0.084 3.916 16 F -0.105 7.105 17 C -0.133 4.133 18 C -0.190 4.190 19 O -0.370 6.370 20 Si 0.789 3.211 21 H -0.205 1.205 22 H -0.176 1.176 23 H -0.157 1.157 24 C -0.042 4.042 25 C -0.164 4.164 26 N -0.143 5.143 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.064 0.936 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.120 0.880 37 H 0.152 0.848 38 H 0.241 0.759 39 H 0.268 0.732 40 H 0.196 0.804 41 H 0.196 0.804 42 H 0.121 0.879 43 H 0.254 0.746 44 H 0.154 0.846 45 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 7.818 2.244 -3.651 8.916 hybrid contribution -0.290 -1.443 0.261 1.495 sum 7.528 0.800 -3.390 8.295 Atomic orbital electron populations 1.26530 1.24591 1.02996 1.03909 0.78249 0.63869 0.65848 0.63580 1.26144 1.07351 1.17911 1.04970 1.26211 1.07507 1.07677 1.15172 1.27400 1.06709 0.81730 1.19467 1.48301 1.14663 1.07730 1.41493 1.22571 1.00808 0.84994 1.02922 1.17767 0.98474 0.85866 1.10906 1.42421 1.24118 1.03689 1.56371 1.18381 0.82842 0.85192 0.78968 1.90696 1.27549 1.83824 1.42098 1.19846 0.98198 0.92213 1.05172 1.21542 0.94545 0.97440 0.92837 1.21416 1.00895 0.91299 1.02644 1.17952 0.95277 0.80348 0.98067 1.91581 1.93423 1.36888 1.88591 1.19474 0.95493 0.96055 1.02268 1.24593 0.85861 0.98817 1.09717 1.86396 1.21692 1.38390 1.90472 0.85707 0.80994 0.78220 0.76203 1.20536 1.17645 1.15715 1.20853 0.98457 0.90088 0.94756 1.24313 0.99795 0.92067 1.00186 1.77393 1.03324 1.12384 1.21220 0.91967 0.91313 0.93567 0.89561 0.90772 0.91002 0.92019 0.91046 0.89137 0.87961 0.84797 0.75918 0.73183 0.80350 0.80439 0.87886 0.74614 0.84585 0.80161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 -0.74 8.65 113.37 0.98 0.25 16 2 Si 1.10 -7.86 12.79 68.60 0.88 -6.99 16 3 C -0.46 3.46 8.65 113.37 0.98 4.44 16 4 C -0.46 3.12 8.65 113.37 0.98 4.10 16 5 C -0.19 1.03 5.59 127.77 0.71 1.75 16 6 N -0.34 -0.62 3.01 -182.92 -0.55 -1.17 16 7 C 0.04 -0.07 11.44 83.50 0.96 0.89 16 8 C -0.03 -0.11 6.90 37.64 0.26 0.15 16 9 N -0.62 0.15 5.42 -306.75 -1.66 -1.52 16 10 C 0.56 3.44 7.74 86.75 0.67 4.11 16 11 O -0.56 -8.39 13.50 -4.00 -0.05 -8.45 16 12 C -0.15 -0.34 5.87 -20.09 -0.12 -0.46 16 13 C -0.05 0.26 9.54 22.52 0.21 0.47 16 14 C -0.14 0.68 10.01 22.27 0.22 0.91 16 15 C 0.10 0.07 6.67 22.47 0.15 0.22 16 16 F -0.13 -0.24 12.82 44.97 0.58 0.34 16 17 C -0.13 -0.45 5.15 -19.86 -0.10 -0.55 16 18 C -0.08 -0.05 2.96 71.24 0.21 0.16 16 19 O -0.56 -0.96 11.47 -148.98 -1.71 -2.67 16 20 Si 0.97 0.97 26.09 68.60 1.79 2.76 16 21 H -0.28 -1.69 7.11 99.48 0.71 -0.98 16 22 H -0.25 -0.06 7.11 99.48 0.71 0.65 16 23 H -0.23 -0.45 5.28 99.48 0.53 0.08 16 24 C -0.02 -0.13 8.91 22.52 0.20 0.07 16 25 C 0.02 0.25 10.84 85.34 0.92 1.17 16 26 N -0.32 -3.42 12.56 -56.76 -0.71 -4.13 16 27 H 0.06 0.17 7.96 -2.39 -0.02 0.15 16 28 H 0.07 0.05 7.96 -2.39 -0.02 0.03 16 29 H 0.04 0.31 7.96 -2.39 -0.02 0.29 16 30 H 0.09 -0.85 7.96 -2.38 -0.02 -0.87 16 31 H 0.07 -0.48 7.96 -2.39 -0.02 -0.50 16 32 H 0.07 -0.49 7.96 -2.39 -0.02 -0.51 16 33 H 0.06 -0.26 7.96 -2.39 -0.02 -0.28 16 34 H 0.07 -0.40 7.96 -2.38 -0.02 -0.42 16 35 H 0.09 -0.94 7.96 -2.39 -0.02 -0.96 16 36 H 0.10 -0.43 7.96 -2.39 -0.02 -0.45 16 37 H 0.13 -1.63 7.96 -2.39 -0.02 -1.65 16 38 H 0.22 -2.79 8.06 -2.91 -0.02 -2.81 16 39 H 0.43 -4.13 6.85 -92.71 -0.64 -4.76 16 40 H 0.18 -2.61 6.40 -2.91 -0.02 -2.63 16 41 H 0.18 -1.91 8.06 -2.91 -0.02 -1.93 16 42 H 0.10 -0.34 7.96 -2.39 -0.02 -0.36 16 43 H 0.40 -2.97 8.74 -74.06 -0.65 -3.62 16 44 H 0.14 1.37 6.71 -2.91 -0.02 1.35 16 45 H 0.18 2.81 5.91 -2.91 -0.02 2.79 16 Total: 0.00 -27.69 381.02 6.13 -21.56 By element: Atomic # 1 Polarization: -17.73 SS G_CDS: 0.33 Total: -17.40 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: 7.25 Total: 17.68 kcal Atomic # 7 Polarization: -3.89 SS G_CDS: -2.93 Total: -6.82 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: -1.76 Total: -11.12 kcal Atomic # 9 Polarization: -0.24 SS G_CDS: 0.58 Total: 0.34 kcal Atomic # 14 Polarization: -6.90 SS G_CDS: 2.67 Total: -4.23 kcal Total: -27.69 6.13 -21.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_12496548.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.853 kcal (2) G-P(sol) polarization free energy of solvation -27.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds