Wall clock time and date at job start Sun Mar 7 2021 10:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86291 * 1 3 3 C 1.86299 * 109.47382 * 2 1 4 4 C 1.86307 * 109.47301 * 239.99917 * 2 1 3 5 5 C 1.86306 * 109.47120 * 120.00218 * 2 1 3 6 6 N 1.46499 * 109.47162 * 59.99729 * 5 2 1 7 7 C 1.35806 * 126.05555 * 270.29646 * 6 5 2 8 8 C 1.35750 * 107.56733 * 180.13711 * 7 6 5 9 9 N 1.40766 * 126.08327 * 179.89693 * 8 7 6 10 10 C 1.34780 * 119.99598 * 179.71260 * 9 8 7 11 11 O 1.21298 * 120.00188 * 0.02562 * 10 9 8 12 12 C 1.50706 * 119.99445 * 179.97438 * 10 9 8 13 13 N 1.46494 * 109.46849 * 179.97438 * 12 10 9 14 14 C 1.35045 * 125.92903 * 124.99937 * 13 12 10 15 15 C 1.35087 * 107.97975 * 179.97438 * 14 13 12 16 16 C 1.50697 * 126.07563 * 180.02562 * 15 14 13 17 17 O 1.42910 * 109.46764 * 105.24801 * 16 15 14 18 18 Si 1.86306 * 109.47226 * 345.25304 * 16 15 14 19 19 H 1.48493 * 109.47134 * 179.97438 * 18 16 15 20 20 H 1.48501 * 109.46561 * 300.00131 * 18 16 15 21 21 H 1.48500 * 109.46901 * 59.99749 * 18 16 15 22 22 C 1.40842 * 107.84845 * 0.02562 * 15 14 13 23 23 C 1.48421 * 126.03863 * 179.97438 * 22 15 14 24 24 C 1.39329 * 120.11837 * 137.18976 * 23 22 15 25 25 C 1.38024 * 119.87994 * 179.97438 * 24 23 22 26 26 C 1.38320 * 120.11800 * 359.97438 * 25 24 23 27 27 C 1.38322 * 120.24138 * 0.02562 * 26 25 24 28 28 C 1.38022 * 120.11960 * 359.97438 * 27 26 25 29 29 N 1.31623 * 107.92490 * 0.22969 * 22 15 14 30 30 C 1.40252 * 107.83663 * 359.63247 * 8 7 6 31 31 N 1.30835 * 108.33678 * 0.23144 * 30 8 7 32 32 H 1.09004 * 109.47261 * 300.00438 * 1 2 3 33 33 H 1.09007 * 109.47213 * 59.99933 * 1 2 3 34 34 H 1.09002 * 109.47444 * 179.97438 * 1 2 3 35 35 H 1.08999 * 109.47374 * 180.02562 * 3 2 1 36 36 H 1.09000 * 109.46845 * 299.99793 * 3 2 1 37 37 H 1.08999 * 109.47106 * 60.00011 * 3 2 1 38 38 H 1.09002 * 109.46985 * 300.00420 * 4 2 1 39 39 H 1.08999 * 109.46539 * 60.00114 * 4 2 1 40 40 H 1.08994 * 109.46991 * 180.02562 * 4 2 1 41 41 H 1.09004 * 109.46518 * 299.99800 * 5 2 1 42 42 H 1.08999 * 109.46953 * 179.97438 * 5 2 1 43 43 H 1.08012 * 126.21767 * 359.97438 * 7 6 5 44 44 H 0.96998 * 119.99835 * 359.71597 * 9 8 7 45 45 H 1.08998 * 109.46597 * 60.00285 * 12 10 9 46 46 H 1.09000 * 109.46949 * 300.00413 * 12 10 9 47 47 H 1.08000 * 126.01156 * 359.97438 * 14 13 12 48 48 H 1.08997 * 109.47468 * 225.24647 * 16 15 14 49 49 H 0.96699 * 113.99480 * 179.97438 * 17 16 15 50 50 H 1.08006 * 120.05913 * 359.96354 * 24 23 22 51 51 H 1.08001 * 119.93918 * 180.02562 * 25 24 23 52 52 H 1.07998 * 119.87637 * 179.74450 * 26 25 24 53 53 H 1.08000 * 119.93801 * 179.97438 * 27 26 25 54 54 H 1.08002 * 120.06246 * 180.02562 * 28 27 26 55 55 H 1.08005 * 125.83893 * 180.22428 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5212 5 6 2.4839 -0.8783 1.5211 6 7 1.9955 -2.2595 1.5211 7 6 0.8300 -2.6952 2.0652 8 6 0.7548 -4.0341 1.8546 9 7 -0.2944 -4.8798 2.2616 10 6 -0.2454 -6.1972 1.9813 11 8 0.7030 -6.6542 1.3787 12 6 -1.3683 -7.1026 2.4176 13 7 -1.0804 -8.4757 1.9959 14 6 -1.0418 -9.5600 2.8000 15 6 -0.7451 -10.6345 2.0370 16 6 -0.6009 -12.0542 2.5214 17 8 -1.7509 -12.8089 2.1335 18 14 -0.4489 -12.0645 4.3782 19 1 -0.3075 -13.4634 4.8556 20 1 0.7459 -11.2801 4.7812 21 1 -1.6646 -11.4578 4.9777 22 6 -0.5945 -10.1922 0.7083 23 6 -0.2650 -11.0423 -0.4629 24 6 -0.9339 -10.8575 -1.6711 25 6 -0.6232 -11.6504 -2.7573 26 6 0.3506 -12.6267 -2.6481 27 6 1.0177 -12.8143 -1.4510 28 6 0.7150 -12.0270 -0.3585 29 7 -0.7920 -8.8910 0.6897 30 6 1.9054 -4.4241 1.1539 31 7 2.6456 -3.3637 0.9553 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3634 -1.0277 -0.0005 35 1 3.5740 1.7564 -0.0005 36 1 2.1207 2.2702 -0.8900 37 1 2.1207 2.2703 0.8900 38 1 2.1206 -1.9059 -1.5212 39 1 2.1206 -0.3644 -2.4111 40 1 3.5739 -0.8786 -1.5209 41 1 2.1206 -0.3644 2.4111 42 1 3.5739 -0.8787 1.5209 43 1 0.0973 -2.0873 2.5754 44 1 -1.0525 -4.5143 2.7438 45 1 -2.3008 -6.7707 1.9611 46 1 -1.4625 -7.0675 3.5030 47 1 -1.2172 -9.5668 3.8656 48 1 0.2913 -12.4995 2.0813 49 1 -1.7262 -13.7345 2.4124 50 1 -1.6942 -10.0953 -1.7575 51 1 -1.1408 -11.5078 -3.6944 52 1 0.5877 -13.2476 -3.4993 53 1 1.7769 -13.5783 -1.3710 54 1 1.2367 -12.1741 0.5756 55 1 2.1405 -5.4282 0.8330 RHF calculation, no. of doubly occupied orbitals= 74 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_12622748.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:17:16 Heat of formation + Delta-G solvation = 93.151844 kcal Electronic energy + Delta-G solvation = -36243.902706 eV Core-core repulsion = 31601.633337 eV Total energy + Delta-G solvation = -4642.269370 eV No. of doubly occupied orbitals = 74 Molecular weight (most abundant/longest-lived isotopes) = 413.180 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -42.55942 -42.26180 -40.49374 -39.73760 -37.61097 -35.95127 -34.86287 -33.70328 -32.41333 -31.98726 -31.50015 -30.55369 -29.56503 -28.73611 -28.40590 -28.32645 -26.87919 -25.90728 -24.30363 -23.44975 -22.92107 -22.13933 -21.60265 -21.30070 -20.70293 -18.72434 -18.45114 -18.15891 -18.04227 -17.48542 -16.85906 -16.66794 -16.39772 -16.10344 -16.02515 -15.74140 -15.59876 -15.18373 -15.17684 -14.95397 -14.52970 -14.33255 -14.27130 -14.21159 -14.17784 -14.14170 -13.93792 -13.85325 -13.84235 -13.60541 -13.43972 -13.38652 -13.23320 -13.16168 -13.04371 -12.65467 -12.29251 -12.21981 -12.18245 -12.07306 -11.84941 -11.78285 -11.51531 -11.39392 -11.21586 -10.87174 -10.82807 -10.60844 -10.10992 -10.05227 -9.85247 -9.77729 -9.29844 -8.64732 0.12945 0.48357 0.72549 0.77171 1.18689 1.23974 1.26873 1.42526 1.51734 1.55537 1.65393 1.71723 1.85149 1.95629 2.00931 2.04791 2.19610 2.55741 2.90467 3.30776 3.55118 3.62866 3.74872 3.85913 3.88736 3.97615 3.98782 4.08107 4.11635 4.16651 4.25157 4.27725 4.37828 4.53950 4.56383 4.58429 4.65714 4.67255 4.71137 4.72289 4.76797 4.81211 4.82545 4.85764 4.87221 4.89506 4.99777 5.07450 5.12988 5.30033 5.48091 5.57998 5.58527 5.59047 5.62246 5.64195 5.73400 5.88110 6.05538 6.07363 6.42310 6.57544 6.67207 6.94377 7.15235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.457 4.457 2 Si 1.096 2.904 3 C -0.454 4.454 4 C -0.478 4.478 5 C -0.189 4.189 6 N -0.340 5.340 7 C 0.035 3.965 8 C -0.022 4.022 9 N -0.622 5.622 10 C 0.492 3.508 11 O -0.549 6.549 12 C 0.116 3.884 13 N -0.360 5.360 14 C 0.064 3.936 15 C -0.228 4.228 16 C -0.051 4.051 17 O -0.563 6.563 18 Si 0.981 3.019 19 H -0.252 1.252 20 H -0.262 1.262 21 H -0.247 1.247 22 C 0.111 3.889 23 C -0.025 4.025 24 C -0.113 4.113 25 C -0.127 4.127 26 C -0.119 4.119 27 C -0.121 4.121 28 C -0.106 4.106 29 N -0.290 5.290 30 C 0.020 3.980 31 N -0.322 5.322 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.043 0.957 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.135 0.865 42 H 0.101 0.899 43 H 0.225 0.775 44 H 0.433 0.567 45 H 0.148 0.852 46 H 0.181 0.819 47 H 0.211 0.789 48 H 0.076 0.924 49 H 0.392 0.608 50 H 0.113 0.887 51 H 0.140 0.860 52 H 0.147 0.853 53 H 0.150 0.850 54 H 0.134 0.866 55 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.944 4.747 7.465 10.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.565 4.565 2 Si 1.285 2.715 3 C -0.563 4.563 4 C -0.581 4.581 5 C -0.353 4.353 6 N -0.122 5.122 7 C -0.114 4.114 8 C -0.127 4.127 9 N -0.270 5.270 10 C 0.278 3.722 11 O -0.425 6.425 12 C -0.007 4.007 13 N -0.142 5.142 14 C -0.081 4.081 15 C -0.239 4.239 16 C -0.161 4.161 17 O -0.371 6.371 18 Si 0.802 3.198 19 H -0.176 1.176 20 H -0.186 1.186 21 H -0.170 1.170 22 C -0.055 4.055 23 C -0.027 4.027 24 C -0.132 4.132 25 C -0.145 4.145 26 C -0.137 4.137 27 C -0.139 4.139 28 C -0.125 4.125 29 N -0.111 5.111 30 C -0.165 4.165 31 N -0.146 5.146 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.062 0.938 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.153 0.847 42 H 0.120 0.880 43 H 0.241 0.759 44 H 0.273 0.727 45 H 0.165 0.835 46 H 0.198 0.802 47 H 0.227 0.773 48 H 0.093 0.907 49 H 0.242 0.758 50 H 0.131 0.869 51 H 0.158 0.842 52 H 0.165 0.835 53 H 0.168 0.832 54 H 0.152 0.848 55 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -3.324 6.734 6.581 9.985 hybrid contribution -0.563 -1.539 0.273 1.661 sum -3.887 5.195 6.854 9.438 Atomic orbital electron populations 1.26207 1.20380 1.04269 1.05661 0.78249 0.66457 0.64800 0.62005 1.26129 1.06650 1.17882 1.05616 1.26556 1.06103 1.07421 1.18043 1.27395 1.06942 0.80653 1.20308 1.48291 1.14915 1.07208 1.41795 1.22580 0.92600 0.93409 1.02814 1.17741 0.93681 0.90659 1.10591 1.42460 1.21935 1.05807 1.56831 1.21169 0.88423 0.82869 0.79738 1.90723 1.35712 1.75473 1.40611 1.21935 0.97385 0.75771 1.05632 1.48083 1.54056 1.07208 1.04859 1.22734 1.00443 0.85993 0.98898 1.19711 1.16050 0.95861 0.92317 1.24275 0.91094 0.88628 1.12109 1.86512 1.41281 1.26990 1.82300 0.85321 0.80403 0.81514 0.72532 1.17563 1.18628 1.17032 1.20871 0.99752 0.90807 0.94036 1.17976 0.98039 0.95795 0.90921 1.21255 0.99756 0.99520 0.92668 1.21349 0.98507 0.95926 0.98676 1.21576 0.95611 0.97867 0.98648 1.21407 1.00313 0.99697 0.92480 1.21322 0.96503 0.94728 0.99927 1.77704 1.22032 1.12047 0.99317 1.24205 0.93562 0.98446 1.00313 1.77396 1.22019 0.93418 1.21816 0.89043 0.91034 0.92139 0.90988 0.90738 0.89460 0.93810 0.91294 0.92012 0.84699 0.88047 0.75878 0.72731 0.83499 0.80186 0.77282 0.90665 0.75848 0.86917 0.84182 0.83518 0.83200 0.84807 0.80937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.89 8.65 113.37 0.98 3.87 16 2 Si 1.10 -7.25 12.78 68.60 0.88 -6.37 16 3 C -0.45 3.31 8.65 113.37 0.98 4.29 16 4 C -0.48 -1.22 8.65 113.37 0.98 -0.24 16 5 C -0.19 0.94 5.59 127.77 0.71 1.65 16 6 N -0.34 -0.80 3.02 -182.93 -0.55 -1.35 16 7 C 0.04 -0.07 11.43 83.50 0.95 0.89 16 8 C -0.02 -0.08 6.90 37.62 0.26 0.17 16 9 N -0.62 1.71 5.47 -304.04 -1.66 0.04 16 10 C 0.49 1.49 7.83 87.66 0.69 2.18 16 11 O -0.55 -8.26 12.85 -3.09 -0.04 -8.30 16 12 C 0.12 -0.55 6.99 85.64 0.60 0.04 16 13 N -0.36 -2.05 3.41 -351.91 -1.20 -3.25 16 14 C 0.06 0.22 9.96 83.47 0.83 1.05 16 15 C -0.23 -1.81 5.39 -19.95 -0.11 -1.92 16 16 C -0.05 -0.13 2.50 71.23 0.18 0.05 16 17 O -0.56 -1.99 12.86 -148.98 -1.92 -3.90 16 18 Si 0.98 -1.62 26.06 68.60 1.79 0.17 16 19 H -0.25 0.46 7.11 99.48 0.71 1.17 16 20 H -0.26 -0.09 7.11 99.48 0.71 0.62 16 21 H -0.25 0.51 7.03 99.48 0.70 1.21 16 22 C 0.11 1.48 6.67 42.53 0.28 1.77 16 23 C -0.03 -0.32 5.74 -20.04 -0.12 -0.43 16 24 C -0.11 -1.31 9.78 22.48 0.22 -1.09 16 25 C -0.13 -0.90 10.03 22.24 0.22 -0.68 16 26 C -0.12 -0.54 10.04 22.31 0.22 -0.31 16 27 C -0.12 -0.56 10.03 22.24 0.22 -0.33 16 28 C -0.11 -0.86 8.89 22.48 0.20 -0.66 16 29 N -0.29 -4.20 11.66 -48.16 -0.56 -4.76 16 30 C 0.02 0.25 10.84 85.33 0.92 1.17 16 31 N -0.32 -3.79 12.56 -56.77 -0.71 -4.50 16 32 H 0.09 -0.92 7.96 -2.39 -0.02 -0.94 16 33 H 0.07 -0.36 7.96 -2.38 -0.02 -0.38 16 34 H 0.06 -0.22 7.96 -2.39 -0.02 -0.24 16 35 H 0.07 -0.47 7.96 -2.39 -0.02 -0.48 16 36 H 0.07 -0.46 7.96 -2.39 -0.02 -0.48 16 37 H 0.09 -0.85 7.96 -2.39 -0.02 -0.86 16 38 H 0.04 0.35 7.96 -2.39 -0.02 0.33 16 39 H 0.07 0.12 7.96 -2.39 -0.02 0.10 16 40 H 0.06 0.23 7.96 -2.39 -0.02 0.21 16 41 H 0.13 -1.61 7.96 -2.39 -0.02 -1.63 16 42 H 0.10 -0.37 7.96 -2.39 -0.02 -0.38 16 43 H 0.22 -2.81 8.06 -2.90 -0.02 -2.83 16 44 H 0.43 -5.63 8.83 -92.71 -0.82 -6.45 16 45 H 0.15 -1.47 8.14 -2.39 -0.02 -1.49 16 46 H 0.18 -2.79 8.07 -2.39 -0.02 -2.81 16 47 H 0.21 -1.10 6.35 -2.91 -0.02 -1.12 16 48 H 0.08 0.06 5.57 -2.39 -0.01 0.05 16 49 H 0.39 -2.25 8.74 -74.06 -0.65 -2.90 16 50 H 0.11 1.37 8.06 -2.91 -0.02 1.35 16 51 H 0.14 0.38 8.06 -2.91 -0.02 0.36 16 52 H 0.15 -0.13 8.06 -2.91 -0.02 -0.15 16 53 H 0.15 -0.16 8.06 -2.91 -0.02 -0.19 16 54 H 0.13 0.65 6.21 -2.91 -0.02 0.64 16 55 H 0.17 3.09 5.92 -2.91 -0.02 3.07 16 Total: 0.00 -40.46 462.19 5.48 -34.99 By element: Atomic # 1 Polarization: -14.45 SS G_CDS: 0.22 Total: -14.24 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: 9.24 Total: 11.47 kcal Atomic # 7 Polarization: -9.13 SS G_CDS: -4.69 Total: -13.82 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: -1.95 Total: -12.20 kcal Atomic # 14 Polarization: -8.87 SS G_CDS: 2.66 Total: -6.20 kcal Total: -40.46 5.48 -34.99 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_12622748.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.138 kcal (2) G-P(sol) polarization free energy of solvation -40.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds