Wall clock time and date at job start Sun Mar 7 2021 10:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86303 * 109.47229 * 2 1 4 4 C 1.86304 * 109.46900 * 240.00301 * 2 1 3 5 5 C 1.86297 * 109.47610 * 120.00116 * 2 1 3 6 6 N 1.46509 * 109.46952 * 59.99978 * 5 2 1 7 7 C 1.35830 * 126.05377 * 89.99993 * 6 5 2 8 8 C 1.35761 * 107.55738 * 180.02562 * 7 6 5 9 9 N 1.40723 * 126.08145 * 179.97438 * 8 7 6 10 10 C 1.34777 * 119.99858 * 180.27871 * 9 8 7 11 11 O 1.21653 * 120.00225 * 359.72032 * 10 9 8 12 12 C 1.47286 * 119.99694 * 179.72335 * 10 9 8 13 13 C 1.39874 * 120.04469 * 359.97438 * 12 10 9 14 14 C 1.36436 * 120.18281 * 180.02562 * 13 12 10 15 15 C 1.39913 * 120.27915 * 0.02562 * 14 13 12 16 16 C 1.47575 * 119.95838 * 179.97438 * 15 14 13 17 17 C 1.36101 * 125.94016 * 359.97438 * 16 15 14 18 18 C 1.40803 * 106.73353 * 179.97438 * 17 16 15 19 19 C 1.34825 * 107.04584 * 359.97438 * 18 17 16 20 20 C 1.50704 * 125.65404 * 180.02562 * 19 18 17 21 21 O 1.42902 * 109.46776 * 300.00476 * 20 19 18 22 22 Si 1.86294 * 109.47506 * 179.97438 * 20 19 18 23 23 H 1.48505 * 109.46926 * 60.00153 * 22 20 19 24 24 H 1.48498 * 109.47216 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47223 * 300.00272 * 22 20 19 26 26 O 1.34234 * 108.70006 * 359.75990 * 19 18 17 27 27 C 1.39617 * 120.08946 * 359.97184 * 15 14 13 28 28 C 1.38268 * 119.81116 * 359.74687 * 27 15 14 29 29 O 1.35686 * 120.13694 * 180.27478 * 28 27 15 30 30 C 1.40270 * 107.83860 * 0.24393 * 8 7 6 31 31 N 1.30830 * 108.33251 * 359.59101 * 30 8 7 32 32 H 1.09006 * 109.46980 * 299.99285 * 1 2 3 33 33 H 1.08997 * 109.47498 * 59.99474 * 1 2 3 34 34 H 1.09004 * 109.47080 * 180.02562 * 1 2 3 35 35 H 1.08996 * 109.47109 * 180.02562 * 3 2 1 36 36 H 1.09007 * 109.47140 * 300.00638 * 3 2 1 37 37 H 1.09001 * 109.46649 * 59.99973 * 3 2 1 38 38 H 1.08994 * 109.47374 * 299.99770 * 4 2 1 39 39 H 1.08998 * 109.47295 * 60.00151 * 4 2 1 40 40 H 1.09007 * 109.47003 * 179.97438 * 4 2 1 41 41 H 1.09001 * 109.46998 * 300.00473 * 5 2 1 42 42 H 1.08996 * 109.47632 * 179.97438 * 5 2 1 43 43 H 1.07994 * 126.21976 * 0.06026 * 7 6 5 44 44 H 0.97001 * 119.99596 * 359.97438 * 9 8 7 45 45 H 1.07996 * 119.91275 * 0.02562 * 13 12 10 46 46 H 1.08000 * 119.86017 * 179.97438 * 14 13 12 47 47 H 1.08001 * 126.63379 * 359.97433 * 17 16 15 48 48 H 1.08001 * 126.47345 * 179.97438 * 18 17 16 49 49 H 1.09003 * 109.46920 * 59.99475 * 20 19 18 50 50 H 0.96697 * 113.99817 * 299.99314 * 21 20 19 51 51 H 1.07998 * 120.09368 * 180.02562 * 27 15 14 52 52 H 0.96701 * 114.00019 * 270.27437 * 29 28 27 53 53 H 1.07996 * 125.83115 * 179.72173 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4839 -0.8782 -1.5212 5 6 2.4841 -0.8782 1.5210 6 7 1.9958 -2.2595 1.5210 7 6 2.6259 -3.3302 0.9719 8 6 1.8449 -4.4196 1.1867 9 7 2.1283 -5.7361 0.7782 10 6 1.2591 -6.7288 1.0532 11 8 0.2320 -6.4877 1.6589 12 6 1.5528 -8.1056 0.6202 13 6 2.7332 -8.3838 -0.0767 14 6 3.0079 -9.6581 -0.4795 15 6 2.1116 -10.6952 -0.1993 16 6 2.4155 -12.0708 -0.6388 17 6 3.5254 -12.4646 -1.3210 18 6 3.4021 -13.8516 -1.5298 19 6 2.2362 -14.2334 -0.9705 20 6 1.6894 -15.6376 -0.9513 21 8 1.5085 -16.0966 -2.2924 22 14 0.0524 -15.6545 -0.0622 23 1 -0.9025 -14.7611 -0.7662 24 1 -0.4867 -17.0380 -0.0438 25 1 0.2410 -15.1776 1.3313 26 8 1.6459 -13.1565 -0.4286 27 6 0.9300 -10.4305 0.4957 28 6 0.6506 -9.1415 0.9108 29 8 -0.4931 -8.8778 1.5915 30 6 0.7022 -3.9986 1.8829 31 7 0.7961 -2.7097 2.0867 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3633 -1.0277 0.0005 35 1 3.5740 1.7564 -0.0005 36 1 2.1206 2.2704 -0.8900 37 1 2.1206 2.2702 0.8900 38 1 2.1206 -1.9058 -1.5213 39 1 2.1206 -0.3643 -2.4112 40 1 3.5740 -0.8778 -1.5215 41 1 2.1207 -0.3644 2.4111 42 1 3.5741 -0.8786 1.5208 43 1 3.5758 -3.3172 0.4583 44 1 2.9470 -5.9283 0.2949 45 1 3.4292 -7.5878 -0.2966 46 1 3.9207 -9.8670 -1.0177 47 1 4.3426 -11.8350 -1.6406 48 1 4.1081 -14.4892 -2.0411 49 1 2.3901 -16.2932 -0.4343 50 1 0.8960 -15.5591 -2.8129 51 1 0.2383 -11.2311 0.7124 52 1 -1.2439 -8.6505 1.0260 53 1 -0.1144 -4.6308 2.1987 RHF calculation, no. of doubly occupied orbitals= 74 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_12807986.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:17:53 Heat of formation + Delta-G solvation = -14.268677 kcal Electronic energy + Delta-G solvation = -35776.144684 eV Core-core repulsion = 30933.779887 eV Total energy + Delta-G solvation = -4842.364797 eV No. of doubly occupied orbitals = 74 Molecular weight (most abundant/longest-lived isotopes) = 415.157 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -43.74495 -42.38518 -41.36347 -39.63847 -38.10551 -37.84149 -35.88752 -34.28811 -33.86869 -33.23300 -31.35979 -30.79722 -30.06146 -29.49961 -28.37598 -28.32704 -27.40025 -26.59183 -24.60872 -24.07435 -23.05238 -22.45751 -22.03417 -21.57796 -21.03328 -19.75120 -18.75087 -18.50178 -18.27577 -17.72247 -17.49979 -17.06190 -16.76650 -16.55415 -16.33750 -16.10719 -15.92628 -15.74501 -15.44301 -15.06657 -14.94942 -14.77785 -14.35666 -14.18052 -14.14762 -14.02444 -13.96166 -13.86546 -13.82491 -13.80194 -13.59348 -13.52287 -13.40928 -13.20687 -13.13209 -13.01628 -12.84700 -12.71241 -12.30353 -12.17291 -12.08065 -11.88605 -11.74930 -11.36219 -11.12631 -10.89992 -10.84451 -10.79636 -10.75925 -10.52421 -10.02289 -9.97250 -9.04811 -8.58532 -0.82046 0.13280 0.59429 0.82899 1.02291 1.33745 1.36594 1.37540 1.42659 1.66100 1.67887 1.73369 1.86487 1.88161 1.98954 2.15888 2.20745 2.58284 2.66410 3.00853 3.29434 3.41675 3.59486 3.61239 3.77660 3.89107 3.96703 4.01186 4.02905 4.21930 4.27849 4.37505 4.46392 4.56898 4.65777 4.68902 4.70155 4.70950 4.73841 4.75584 4.80880 4.84000 4.85331 4.87794 4.89401 4.91537 5.04757 5.09477 5.11770 5.20788 5.45543 5.51388 5.52775 5.61381 5.66370 5.77905 5.97360 6.09287 6.43355 6.54002 6.67981 6.70793 7.15647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.476 4.476 2 Si 1.093 2.907 3 C -0.455 4.455 4 C -0.457 4.457 5 C -0.190 4.190 6 N -0.340 5.340 7 C 0.035 3.965 8 C -0.024 4.024 9 N -0.622 5.622 10 C 0.554 3.446 11 O -0.549 6.549 12 C -0.174 4.174 13 C -0.049 4.049 14 C -0.108 4.108 15 C 0.026 3.974 16 C -0.001 4.001 17 C -0.168 4.168 18 C -0.178 4.178 19 C -0.058 4.058 20 C -0.030 4.030 21 O -0.536 6.536 22 Si 0.978 3.022 23 H -0.264 1.264 24 H -0.251 1.251 25 H -0.269 1.269 26 O -0.186 6.186 27 C -0.157 4.157 28 C 0.163 3.837 29 O -0.496 6.496 30 C 0.022 3.978 31 N -0.320 5.320 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.045 0.955 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.101 0.899 42 H 0.133 0.867 43 H 0.224 0.776 44 H 0.426 0.574 45 H 0.177 0.823 46 H 0.174 0.826 47 H 0.185 0.815 48 H 0.171 0.829 49 H 0.154 0.846 50 H 0.393 0.607 51 H 0.133 0.867 52 H 0.409 0.591 53 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.480 1.775 -7.277 12.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.580 4.580 2 Si 1.282 2.718 3 C -0.564 4.564 4 C -0.565 4.565 5 C -0.353 4.353 6 N -0.122 5.122 7 C -0.115 4.115 8 C -0.129 4.129 9 N -0.269 5.269 10 C 0.343 3.657 11 O -0.427 6.427 12 C -0.177 4.177 13 C -0.067 4.067 14 C -0.125 4.125 15 C 0.025 3.975 16 C -0.050 4.050 17 C -0.187 4.187 18 C -0.197 4.197 19 C -0.108 4.108 20 C -0.141 4.141 21 O -0.344 6.344 22 Si 0.802 3.198 23 H -0.188 1.188 24 H -0.175 1.175 25 H -0.194 1.194 26 O -0.084 6.084 27 C -0.176 4.176 28 C 0.116 3.884 29 O -0.309 6.309 30 C -0.163 4.163 31 N -0.144 5.144 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.109 0.891 41 H 0.120 0.880 42 H 0.152 0.848 43 H 0.240 0.760 44 H 0.266 0.734 45 H 0.194 0.806 46 H 0.191 0.809 47 H 0.202 0.798 48 H 0.189 0.811 49 H 0.172 0.828 50 H 0.243 0.757 51 H 0.151 0.849 52 H 0.269 0.731 53 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 7.897 2.477 -5.024 9.682 hybrid contribution -0.324 -0.519 -0.786 0.996 sum 7.573 1.959 -5.810 9.744 Atomic orbital electron populations 1.26522 1.24511 1.03015 1.03924 0.78294 0.63965 0.65923 0.63637 1.26141 1.07360 1.17866 1.04993 1.26197 1.07508 1.07671 1.15108 1.27409 1.06692 0.81764 1.19475 1.48292 1.14651 1.07721 1.41564 1.22559 1.00813 0.85029 1.03058 1.17777 0.98425 0.85908 1.10771 1.42457 1.24070 1.03727 1.56690 1.18238 0.83163 0.84970 0.79346 1.90723 1.27286 1.83575 1.41162 1.20349 0.99430 0.92027 1.05936 1.21219 0.94136 0.98132 0.93250 1.21072 1.00096 0.90567 1.00780 1.17996 0.94351 0.88652 0.96464 1.20610 0.93080 0.86108 1.05190 1.22280 0.99026 0.95907 1.01464 1.21840 0.97925 0.95835 1.04057 1.23384 0.95910 0.89407 1.02059 1.24291 1.11480 0.87584 0.90720 1.86548 1.69592 1.55625 1.22593 0.85219 0.75438 0.80408 0.78780 1.18828 1.17481 1.19381 1.83936 1.45780 1.15941 1.62772 1.21541 0.98964 0.96617 1.00454 1.18460 0.88326 0.90966 0.90623 1.84736 1.19629 1.90756 1.35755 1.24308 0.99839 0.92025 1.00161 1.77387 1.03340 1.12451 1.21250 0.92002 0.91249 0.93535 0.89550 0.90715 0.91014 0.91988 0.90973 0.89135 0.88035 0.84843 0.75981 0.73361 0.80557 0.80908 0.79763 0.81134 0.82846 0.75713 0.84943 0.73123 0.80156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 -0.66 8.65 113.37 0.98 0.32 16 2 Si 1.09 -7.84 12.79 68.60 0.88 -6.96 16 3 C -0.45 3.48 8.65 113.37 0.98 4.46 16 4 C -0.46 3.22 8.65 113.37 0.98 4.20 16 5 C -0.19 0.99 5.59 127.77 0.71 1.71 16 6 N -0.34 -0.68 3.01 -182.91 -0.55 -1.23 16 7 C 0.03 -0.06 11.44 83.50 0.96 0.89 16 8 C -0.02 -0.11 6.90 37.63 0.26 0.15 16 9 N -0.62 0.09 5.42 -307.08 -1.66 -1.57 16 10 C 0.55 3.36 7.73 86.62 0.67 4.03 16 11 O -0.55 -7.82 12.29 16.79 0.21 -7.61 16 12 C -0.17 -0.37 5.89 -19.97 -0.12 -0.49 16 13 C -0.05 0.30 9.47 22.24 0.21 0.51 16 14 C -0.11 0.62 9.48 22.25 0.21 0.83 16 15 C 0.03 0.02 5.87 -20.08 -0.12 -0.10 16 16 C 0.00 0.00 7.02 24.24 0.17 0.17 16 17 C -0.17 0.37 10.26 22.40 0.23 0.60 16 18 C -0.18 0.19 10.76 22.11 0.24 0.43 16 19 C -0.06 -0.05 6.22 24.90 0.15 0.11 16 20 C -0.03 0.07 2.98 71.24 0.21 0.28 16 21 O -0.54 1.21 12.87 -148.98 -1.92 -0.71 16 22 Si 0.98 0.08 27.38 68.60 1.88 1.96 16 23 H -0.26 -0.63 7.11 99.48 0.71 0.08 16 24 H -0.25 -0.28 7.11 99.48 0.71 0.43 16 25 H -0.27 -1.03 7.11 99.48 0.71 -0.33 16 26 O -0.19 -0.79 8.78 -6.02 -0.05 -0.85 16 27 C -0.16 -0.63 9.65 22.61 0.22 -0.42 16 28 C 0.16 0.91 6.71 22.81 0.15 1.06 16 29 O -0.50 -4.14 11.56 -69.05 -0.80 -4.94 16 30 C 0.02 0.25 10.84 85.34 0.92 1.18 16 31 N -0.32 -3.48 12.56 -56.76 -0.71 -4.19 16 32 H 0.06 0.16 7.96 -2.38 -0.02 0.14 16 33 H 0.07 0.04 7.96 -2.39 -0.02 0.02 16 34 H 0.05 0.30 7.96 -2.38 -0.02 0.28 16 35 H 0.09 -0.85 7.96 -2.39 -0.02 -0.87 16 36 H 0.07 -0.50 7.96 -2.38 -0.02 -0.52 16 37 H 0.07 -0.49 7.96 -2.39 -0.02 -0.51 16 38 H 0.06 -0.28 7.96 -2.39 -0.02 -0.30 16 39 H 0.07 -0.43 7.96 -2.39 -0.02 -0.45 16 40 H 0.09 -0.96 7.96 -2.38 -0.02 -0.98 16 41 H 0.10 -0.40 7.96 -2.39 -0.02 -0.42 16 42 H 0.13 -1.59 7.96 -2.39 -0.02 -1.61 16 43 H 0.22 -2.74 8.06 -2.91 -0.02 -2.76 16 44 H 0.43 -4.00 6.83 -92.71 -0.63 -4.64 16 45 H 0.18 -2.61 6.38 -2.91 -0.02 -2.63 16 46 H 0.17 -2.18 6.95 -2.91 -0.02 -2.20 16 47 H 0.19 -1.64 7.24 -2.91 -0.02 -1.66 16 48 H 0.17 -0.74 8.06 -2.91 -0.02 -0.76 16 49 H 0.15 -0.92 7.96 -2.39 -0.02 -0.93 16 50 H 0.39 -3.16 8.70 -74.06 -0.64 -3.80 16 51 H 0.13 0.64 7.90 -2.91 -0.02 0.61 16 52 H 0.41 0.53 9.06 -74.06 -0.67 -0.14 16 53 H 0.18 2.81 5.91 -2.91 -0.02 2.79 16 Total: 0.00 -32.45 451.40 5.09 -27.36 By element: Atomic # 1 Polarization: -20.97 SS G_CDS: -0.20 Total: -21.17 kcal Atomic # 6 Polarization: 11.90 SS G_CDS: 8.03 Total: 19.92 kcal Atomic # 7 Polarization: -4.06 SS G_CDS: -2.93 Total: -6.99 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -2.56 Total: -14.11 kcal Atomic # 14 Polarization: -7.77 SS G_CDS: 2.76 Total: -5.01 kcal Total: -32.45 5.09 -27.36 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_12807986.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.090 kcal (2) G-P(sol) polarization free energy of solvation -32.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds