Wall clock time and date at job start Sun Mar 7 2021 10:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39290 * 121.03243 * 2 1 4 4 C 1.46497 * 134.19802 * 359.94802 * 3 2 1 5 5 C 1.50704 * 126.59671 * 0.02951 * 4 3 2 6 6 O 1.42896 * 109.47142 * 284.99534 * 5 4 3 7 7 Si 1.86305 * 109.46899 * 164.99824 * 5 4 3 8 8 H 1.48500 * 109.47083 * 59.99816 * 7 5 4 9 9 H 1.48498 * 109.46727 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47047 * 300.00257 * 7 5 4 11 11 C 1.34176 * 106.80342 * 180.02562 * 4 3 2 12 12 N 1.36948 * 109.95333 * 359.97438 * 11 4 3 13 13 C 1.37170 * 110.11023 * 0.02562 * 12 11 4 14 14 N 1.32817 * 132.96154 * 179.97438 * 13 12 11 15 15 C 1.31310 * 121.88756 * 179.73932 * 14 13 12 16 16 C 1.39754 * 121.03010 * 179.97438 * 2 1 3 17 17 C 1.47645 * 120.45413 * 0.02583 * 16 2 1 18 18 O 1.21602 * 120.00333 * 354.23845 * 17 16 2 19 19 N 1.34778 * 119.99799 * 174.24527 * 17 16 2 20 20 C 1.40724 * 120.00106 * 180.02562 * 19 17 16 21 21 C 1.35767 * 126.08370 * 179.97438 * 20 19 17 22 22 N 1.35817 * 107.55929 * 179.72870 * 21 20 19 23 23 C 1.46500 * 126.05525 * 180.02562 * 22 21 20 24 24 Si 1.86308 * 109.47012 * 90.00105 * 23 22 21 25 25 C 1.86304 * 109.46758 * 60.00571 * 24 23 22 26 26 C 1.86294 * 109.46959 * 180.02562 * 24 23 22 27 27 C 1.86297 * 109.47212 * 300.00674 * 24 23 22 28 28 N 1.40067 * 107.89553 * 0.02562 * 22 21 20 29 29 C 1.30833 * 108.37372 * 359.97438 * 28 22 21 30 30 H 1.09007 * 109.47131 * 263.73115 * 1 2 3 31 31 H 1.09001 * 109.47536 * 23.72810 * 1 2 3 32 32 H 1.09003 * 109.47328 * 143.72721 * 1 2 3 33 33 H 1.08994 * 109.47441 * 44.99825 * 5 4 3 34 34 H 0.96697 * 114.00285 * 300.00731 * 6 5 4 35 35 H 1.07997 * 125.02481 * 180.02562 * 11 4 3 36 36 H 0.96998 * 124.94279 * 180.02562 * 12 11 4 37 37 H 1.08003 * 119.31535 * 180.27253 * 15 14 13 38 38 H 0.97006 * 120.00311 * 359.97438 * 19 17 16 39 39 H 1.07997 * 126.21897 * 359.73848 * 21 20 19 40 40 H 1.08996 * 109.48017 * 210.00600 * 23 22 21 41 41 H 1.09008 * 109.46987 * 330.01000 * 23 22 21 42 42 H 1.08999 * 109.47002 * 59.99563 * 25 24 23 43 43 H 1.08993 * 109.46928 * 179.97438 * 25 24 23 44 44 H 1.09003 * 109.46819 * 300.00144 * 25 24 23 45 45 H 1.09002 * 109.47418 * 60.00534 * 26 24 23 46 46 H 1.09003 * 109.47164 * 180.02562 * 26 24 23 47 47 H 1.08996 * 109.47937 * 300.00414 * 26 24 23 48 48 H 1.09001 * 109.47433 * 59.99833 * 27 24 23 49 49 H 1.09003 * 109.46779 * 179.97438 * 27 24 23 50 50 H 1.09002 * 109.46921 * 299.99316 * 27 24 23 51 51 H 1.08003 * 125.82843 * 180.02562 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1935 0.0000 4 6 1.8516 2.6101 -0.0010 5 6 0.4526 3.1704 -0.0017 6 8 -0.1188 3.0232 -1.3031 7 14 0.5068 4.9766 0.4519 8 1 1.3348 5.7110 -0.5382 9 1 -0.8716 5.5288 0.4506 10 1 1.1007 5.1297 1.8043 11 6 2.9947 3.3126 -0.0010 12 7 4.0669 2.4606 0.0005 13 6 3.6347 1.1588 0.0009 14 7 4.2720 -0.0065 0.0017 15 6 3.6267 -1.1501 0.0071 16 6 2.2274 -1.1975 0.0005 17 6 1.5225 -2.4949 0.0005 18 8 0.3115 -2.5290 0.1058 19 7 2.2213 -3.6414 -0.1160 20 6 1.5495 -4.8780 -0.1165 21 6 2.1271 -6.1017 -0.2266 22 7 1.1356 -7.0286 -0.1778 23 6 1.3083 -8.4811 -0.2605 24 14 1.5425 -9.1771 1.4517 25 6 0.0456 -8.7879 2.4903 26 6 1.7628 -11.0240 1.3465 27 6 3.0537 -8.4152 2.2304 28 7 -0.0813 -6.3501 -0.0345 29 6 0.1646 -5.0656 0.0025 30 1 -0.3634 -0.1122 1.0216 31 1 -0.3634 0.9408 -0.4135 32 1 -0.3634 -0.8285 -0.6080 33 1 -0.1551 2.6314 0.7251 34 1 0.3712 3.4781 -2.0016 35 1 3.0597 4.3906 -0.0012 36 1 4.9965 2.7375 0.0011 37 1 4.1869 -2.0734 0.0120 38 1 3.1873 -3.6143 -0.2002 39 1 3.1830 -6.3017 -0.3334 40 1 0.4241 -8.9269 -0.7161 41 1 2.1841 -8.7088 -0.8682 42 1 -0.8386 -9.2335 2.0346 43 1 0.1824 -9.1954 3.4918 44 1 -0.0830 -7.7072 2.5517 45 1 2.6388 -11.2514 0.7389 46 1 1.8994 -11.4313 2.3483 47 1 0.8789 -11.4701 0.8907 48 1 2.9252 -7.3346 2.2919 49 1 3.1905 -8.8222 3.2323 50 1 3.9295 -8.6431 1.6227 51 1 -0.5728 -4.2835 0.1070 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_12890568.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:18:18 Heat of formation + Delta-G solvation = 53.030789 kcal Electronic energy + Delta-G solvation = -33071.118522 eV Core-core repulsion = 28710.873132 eV Total energy + Delta-G solvation = -4360.245390 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 387.164 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.87332 -42.26684 -40.71452 -38.74838 -37.71798 -36.12710 -34.90607 -33.69708 -31.96753 -31.47936 -30.06005 -29.48989 -28.83930 -28.36198 -28.30928 -27.01883 -26.34379 -24.77656 -24.02588 -22.88812 -22.01034 -21.25178 -20.57052 -19.28373 -18.78118 -18.28839 -17.68004 -17.38224 -16.90144 -16.72226 -16.45576 -16.29408 -15.88812 -15.72620 -15.49623 -15.28416 -15.10393 -14.77884 -14.36870 -14.19198 -14.14548 -14.13673 -13.90834 -13.82530 -13.80114 -13.73918 -13.60363 -13.41436 -13.22969 -13.19990 -13.13126 -13.01146 -13.00114 -12.35006 -12.12171 -12.10463 -11.71964 -11.70995 -11.33700 -11.13596 -11.08243 -10.83192 -10.78669 -10.49571 -10.17257 -9.99101 -9.67985 -9.13680 -8.55363 -0.36004 -0.07862 0.83351 1.23493 1.39057 1.40647 1.51613 1.52354 1.61370 1.69337 1.70168 1.89391 2.01317 2.02106 2.17002 2.23770 2.59679 2.79686 3.31411 3.49262 3.59649 3.65991 3.71814 3.75183 3.81005 4.02238 4.13413 4.25477 4.31975 4.33697 4.54386 4.61654 4.66295 4.71209 4.73009 4.74135 4.76438 4.77449 4.82679 4.84670 4.85994 4.88578 4.90242 5.00988 5.12686 5.21854 5.34115 5.43981 5.52937 5.62236 5.67190 5.73943 5.82520 6.12269 6.21530 6.45494 6.74233 6.81995 6.84582 7.17964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.068 3.932 3 C -0.164 4.164 4 C -0.197 4.197 5 C -0.057 4.057 6 O -0.554 6.554 7 Si 0.990 3.010 8 H -0.230 1.230 9 H -0.278 1.278 10 H -0.256 1.256 11 C 0.079 3.921 12 N -0.561 5.561 13 C 0.289 3.711 14 N -0.515 5.515 15 C 0.182 3.818 16 C -0.236 4.236 17 C 0.569 3.431 18 O -0.550 6.550 19 N -0.624 5.624 20 C -0.021 4.021 21 C 0.032 3.968 22 N -0.341 5.341 23 C -0.189 4.189 24 Si 1.095 2.905 25 C -0.475 4.475 26 C -0.455 4.455 27 C -0.459 4.459 28 N -0.319 5.319 29 C 0.024 3.976 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.109 0.891 34 H 0.388 0.612 35 H 0.216 0.784 36 H 0.438 0.562 37 H 0.197 0.803 38 H 0.424 0.576 39 H 0.221 0.779 40 H 0.102 0.898 41 H 0.132 0.868 42 H 0.062 0.938 43 H 0.068 0.932 44 H 0.046 0.954 45 H 0.085 0.915 46 H 0.073 0.927 47 H 0.071 0.929 48 H 0.060 0.940 49 H 0.070 0.930 50 H 0.088 0.912 51 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.784 0.795 -0.656 8.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.060 3.940 3 C -0.172 4.172 4 C -0.205 4.205 5 C -0.167 4.167 6 O -0.361 6.361 7 Si 0.811 3.189 8 H -0.152 1.152 9 H -0.203 1.203 10 H -0.180 1.180 11 C -0.048 4.048 12 N -0.167 5.167 13 C 0.055 3.945 14 N -0.229 5.229 15 C 0.013 3.987 16 C -0.244 4.244 17 C 0.358 3.642 18 O -0.430 6.430 19 N -0.270 5.270 20 C -0.126 4.126 21 C -0.117 4.117 22 N -0.123 5.123 23 C -0.353 4.353 24 Si 1.284 2.716 25 C -0.579 4.579 26 C -0.564 4.564 27 C -0.566 4.566 28 N -0.143 5.143 29 C -0.161 4.161 30 H 0.095 0.905 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.127 0.873 34 H 0.237 0.763 35 H 0.232 0.768 36 H 0.279 0.721 37 H 0.214 0.786 38 H 0.264 0.736 39 H 0.237 0.763 40 H 0.120 0.880 41 H 0.150 0.850 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.065 0.935 45 H 0.104 0.896 46 H 0.092 0.908 47 H 0.090 0.910 48 H 0.080 0.920 49 H 0.090 0.910 50 H 0.107 0.893 51 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 7.675 0.490 -0.062 7.691 hybrid contribution 0.486 0.579 -0.363 0.839 sum 8.161 1.070 -0.425 8.241 Atomic orbital electron populations 1.21145 0.89223 1.04456 1.03259 1.20056 0.97185 0.89963 0.86841 1.19703 0.93166 0.94281 1.10000 1.20835 0.96331 0.90431 1.12878 1.24574 0.90350 1.12815 0.88953 1.86495 1.54402 1.78319 1.16904 0.85177 0.80379 0.72427 0.80907 1.15225 1.20306 1.18018 1.22284 0.84295 0.97147 1.01085 1.41583 1.10521 1.01818 1.62795 1.18779 0.89578 0.86790 0.99321 1.66522 1.40769 0.96409 1.19174 1.23006 0.89582 0.95408 0.90692 1.20329 0.95399 0.92715 1.15916 1.17986 0.86484 0.83512 0.76196 1.90645 1.14938 1.86843 1.50530 1.42446 1.10860 1.02070 1.71673 1.17751 0.91760 0.86064 1.16978 1.22535 0.96990 0.86621 1.05600 1.48264 1.03235 1.06573 1.54237 1.27383 1.08121 0.76960 1.22805 0.78254 0.65103 0.66086 0.62163 1.26512 1.17152 1.03861 1.10411 1.26141 1.05615 1.19275 1.05321 1.26224 1.15711 1.06787 1.07921 1.77384 1.05890 1.05959 1.25099 1.24339 0.96258 0.93761 1.01767 0.90452 0.89454 0.89967 0.87341 0.76253 0.76808 0.72108 0.78636 0.73618 0.76255 0.87963 0.84988 0.91909 0.91304 0.93491 0.89612 0.90754 0.90951 0.92049 0.91045 0.89265 0.79805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 8.46 71.23 0.60 -0.43 16 2 C 0.07 0.52 5.98 -19.25 -0.12 0.41 16 3 C -0.16 -0.92 6.16 -20.19 -0.12 -1.04 16 4 C -0.20 -0.06 5.57 -18.64 -0.10 -0.17 16 5 C -0.06 0.07 1.88 71.24 0.13 0.20 16 6 O -0.55 -0.22 11.67 -148.98 -1.74 -1.96 16 7 Si 0.99 -4.42 26.09 68.60 1.79 -2.63 16 8 H -0.23 1.83 7.03 99.48 0.70 2.53 16 9 H -0.28 -0.15 7.11 99.48 0.71 0.56 16 10 H -0.26 0.85 7.11 99.48 0.71 1.56 16 11 C 0.08 -0.37 10.44 82.97 0.87 0.50 16 12 N -0.56 1.50 6.04 -192.25 -1.16 0.34 16 13 C 0.29 1.21 8.42 134.02 1.13 2.34 16 14 N -0.52 -2.28 10.37 -191.74 -1.99 -4.26 16 15 C 0.18 0.23 10.67 85.20 0.91 1.14 16 16 C -0.24 -1.27 5.89 -20.00 -0.12 -1.39 16 17 C 0.57 3.98 7.69 86.73 0.67 4.65 16 18 O -0.55 -7.31 10.64 -4.04 -0.04 -7.35 16 19 N -0.62 -0.75 5.42 -306.79 -1.66 -2.41 16 20 C -0.02 -0.10 6.90 37.63 0.26 0.16 16 21 C 0.03 -0.03 11.44 83.50 0.96 0.93 16 22 N -0.34 -0.87 3.01 -182.91 -0.55 -1.42 16 23 C -0.19 0.88 5.59 127.77 0.71 1.59 16 24 Si 1.09 -7.13 12.79 68.60 0.88 -6.25 16 25 C -0.48 -0.89 8.65 113.37 0.98 0.09 16 26 C -0.45 3.20 8.65 113.37 0.98 4.18 16 27 C -0.46 2.69 8.65 113.37 0.98 3.67 16 28 N -0.32 -3.48 12.56 -56.76 -0.71 -4.19 16 29 C 0.02 0.27 10.84 85.33 0.92 1.20 16 30 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.09 0.63 4.79 -2.39 -0.01 0.62 16 32 H 0.08 0.96 5.95 -2.39 -0.01 0.95 16 33 H 0.11 0.01 7.13 -2.39 -0.02 -0.01 16 34 H 0.39 -2.64 8.70 -74.06 -0.64 -3.28 16 35 H 0.22 -2.68 6.30 -2.91 -0.02 -2.69 16 36 H 0.44 -3.59 8.96 -92.71 -0.83 -4.42 16 37 H 0.20 -1.48 6.43 -2.91 -0.02 -1.50 16 38 H 0.42 -2.98 6.90 -92.70 -0.64 -3.62 16 39 H 0.22 -2.37 8.06 -2.91 -0.02 -2.40 16 40 H 0.10 -0.37 7.96 -2.39 -0.02 -0.39 16 41 H 0.13 -1.47 7.96 -2.38 -0.02 -1.49 16 42 H 0.06 0.18 7.96 -2.39 -0.02 0.16 16 43 H 0.07 0.07 7.96 -2.39 -0.02 0.05 16 44 H 0.05 0.33 7.96 -2.39 -0.02 0.31 16 45 H 0.08 -0.79 7.96 -2.39 -0.02 -0.81 16 46 H 0.07 -0.45 7.96 -2.39 -0.02 -0.47 16 47 H 0.07 -0.46 7.96 -2.39 -0.02 -0.48 16 48 H 0.06 -0.20 7.96 -2.39 -0.02 -0.22 16 49 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 50 H 0.09 -0.82 7.96 -2.39 -0.02 -0.84 16 51 H 0.19 2.70 5.91 -2.91 -0.02 2.68 16 Total: 0.00 -29.14 416.59 4.10 -25.04 By element: Atomic # 1 Polarization: -12.58 SS G_CDS: -0.35 Total: -12.93 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: 9.64 Total: 18.03 kcal Atomic # 7 Polarization: -5.86 SS G_CDS: -6.08 Total: -11.94 kcal Atomic # 8 Polarization: -7.53 SS G_CDS: -1.78 Total: -9.31 kcal Atomic # 14 Polarization: -11.55 SS G_CDS: 2.67 Total: -8.88 kcal Total: -29.14 4.10 -25.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_12890568.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.068 kcal (2) G-P(sol) polarization free energy of solvation -29.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds