Wall clock time and date at job start Sun Mar 7 2021 10:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86304 * 109.47056 * 2 1 4 4 C 1.86296 * 109.47272 * 240.00136 * 2 1 3 5 5 C 1.86299 * 109.46843 * 119.99759 * 2 1 3 6 6 N 1.46497 * 109.47115 * 60.00245 * 5 2 1 7 7 C 1.35825 * 126.05331 * 270.26232 * 6 5 2 8 8 C 1.35778 * 107.55556 * 180.18414 * 7 6 5 9 9 N 1.40694 * 126.07539 * 179.87731 * 8 7 6 10 10 C 1.34782 * 119.99881 * 179.71197 * 9 8 7 11 11 O 1.21602 * 119.99678 * 0.02562 * 10 9 8 12 12 C 1.47695 * 120.00479 * 179.97438 * 10 9 8 13 13 C 1.39710 * 120.03029 * 180.02562 * 12 10 9 14 14 C 1.37663 * 119.97910 * 180.02562 * 13 12 10 15 15 C 1.39503 * 120.02549 * 0.02562 * 14 13 12 16 16 C 1.48276 * 119.97695 * 179.97438 * 15 14 13 17 17 C 1.39393 * 120.12563 * 359.72423 * 16 15 14 18 18 C 1.38006 * 119.87300 * 179.76321 * 17 16 15 19 19 C 1.38337 * 120.12059 * 0.51647 * 18 17 16 20 20 C 1.50697 * 119.87010 * 179.71883 * 19 18 17 21 21 O 1.42900 * 109.47366 * 245.01920 * 20 19 18 22 22 Si 1.86301 * 109.47211 * 5.01961 * 20 19 18 23 23 H 1.48496 * 109.47463 * 59.99792 * 22 20 19 24 24 H 1.48497 * 109.47577 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.46981 * 299.99914 * 22 20 19 26 26 C 1.38333 * 120.25792 * 359.73337 * 19 18 17 27 27 C 1.37995 * 120.13006 * 0.02562 * 26 19 18 28 28 C 1.39506 * 120.04830 * 0.25628 * 15 14 13 29 29 C 1.37671 * 120.02650 * 359.44171 * 28 15 14 30 30 C 1.40268 * 107.83580 * 359.61203 * 8 7 6 31 31 N 1.30824 * 108.33399 * 0.24515 * 30 8 7 32 32 H 1.08994 * 109.47290 * 300.00376 * 1 2 3 33 33 H 1.09005 * 109.46848 * 60.00394 * 1 2 3 34 34 H 1.09001 * 109.46679 * 180.02562 * 1 2 3 35 35 H 1.08997 * 109.47257 * 179.97438 * 3 2 1 36 36 H 1.09002 * 109.46571 * 299.99861 * 3 2 1 37 37 H 1.08996 * 109.46888 * 59.99515 * 3 2 1 38 38 H 1.09009 * 109.46860 * 299.99716 * 4 2 1 39 39 H 1.08992 * 109.47454 * 59.99573 * 4 2 1 40 40 H 1.09007 * 109.47118 * 180.02562 * 4 2 1 41 41 H 1.08999 * 109.47502 * 299.99837 * 5 2 1 42 42 H 1.09005 * 109.46537 * 180.02562 * 5 2 1 43 43 H 1.07995 * 126.21834 * 0.07564 * 7 6 5 44 44 H 0.96997 * 120.00569 * 359.71620 * 9 8 7 45 45 H 1.08001 * 120.00799 * 359.97438 * 13 12 10 46 46 H 1.08003 * 119.98630 * 179.97438 * 14 13 12 47 47 H 1.08005 * 120.06688 * 359.97438 * 17 16 15 48 48 H 1.07995 * 119.93764 * 180.22895 * 18 17 16 49 49 H 1.08998 * 109.47752 * 125.01400 * 20 19 18 50 50 H 0.96699 * 113.99784 * 59.99481 * 21 20 19 51 51 H 1.08001 * 119.93398 * 179.97438 * 26 19 18 52 52 H 1.07997 * 120.06910 * 179.97438 * 27 26 19 53 53 H 1.07995 * 119.98984 * 179.70729 * 28 15 14 54 54 H 1.07996 * 120.01728 * 180.28336 * 29 28 15 55 55 H 1.07997 * 125.82709 * 180.21881 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4839 -0.8782 1.5212 6 7 1.9956 -2.2594 1.5212 7 6 0.8302 -2.6952 2.0658 8 6 0.7556 -4.0346 1.8558 9 7 -0.2924 -4.8800 2.2637 10 6 -0.2430 -6.1976 1.9840 11 8 0.7076 -6.6556 1.3796 12 6 -1.3428 -7.0854 2.4126 13 6 -1.2919 -8.4513 2.1234 14 6 -2.3178 -9.2777 2.5230 15 6 -3.4084 -8.7516 3.2158 16 6 -4.5131 -9.6426 3.6452 17 6 -4.4672 -11.0048 3.3527 18 6 -5.4959 -11.8302 3.7591 19 6 -6.5763 -11.3062 4.4460 20 6 -7.6995 -12.2115 4.8815 21 8 -8.8977 -11.8495 4.1921 22 14 -7.2632 -13.9783 4.4826 23 1 -6.0181 -14.3546 5.1989 24 1 -8.3703 -14.8705 4.9111 25 1 -7.0538 -14.1181 3.0190 26 6 -6.6297 -9.9543 4.7344 27 6 -5.6045 -9.1202 4.3374 28 6 -3.4632 -7.3869 3.5000 29 6 -2.4354 -6.5596 3.1069 30 6 1.9062 -4.4242 1.1546 31 7 2.6458 -3.3636 0.9555 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 -0.3633 -1.0277 0.0005 35 1 3.5740 1.7565 0.0005 36 1 2.1207 2.2702 -0.8900 37 1 2.1206 2.2703 0.8899 38 1 2.1207 -1.9059 -1.5211 39 1 2.1207 -0.3644 -2.4111 40 1 3.5741 -0.8785 -1.5209 41 1 2.1206 -0.3643 2.4112 42 1 3.5740 -0.8777 1.5214 43 1 0.0971 -2.0872 2.5750 44 1 -1.0505 -4.5148 2.7460 45 1 -0.4483 -8.8585 1.5859 46 1 -2.2788 -10.3335 2.2991 47 1 -3.6265 -11.4141 2.8122 48 1 -5.4595 -12.8863 3.5363 49 1 -7.8532 -12.1090 5.9557 50 1 -8.8334 -11.9172 3.2296 51 1 -7.4759 -9.5507 5.2706 52 1 -5.6475 -8.0649 4.5628 53 1 -4.3101 -6.9799 4.0323 54 1 -2.4758 -5.5039 3.3310 55 1 2.1416 -5.4284 0.8342 RHF calculation, no. of doubly occupied orbitals= 73 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_13158362.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:22:07 Heat of formation + Delta-G solvation = 35.180634 kcal Electronic energy + Delta-G solvation = -33962.723240 eV Core-core repulsion = 29476.103351 eV Total energy + Delta-G solvation = -4486.619890 eV No. of doubly occupied orbitals = 73 Molecular weight (most abundant/longest-lived isotopes) = 409.173 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -42.38674 -41.27933 -40.57331 -39.21094 -37.50173 -36.02776 -34.16674 -33.58233 -32.59368 -31.61254 -31.15480 -30.11857 -29.50680 -28.38106 -28.33515 -27.36386 -26.58602 -24.67641 -24.59793 -23.00823 -22.65685 -22.20823 -21.75407 -20.94242 -19.20848 -18.56885 -18.20417 -17.69573 -17.12927 -16.81225 -16.62260 -16.32131 -16.08596 -15.96771 -15.89506 -15.55346 -15.23526 -15.12381 -14.95780 -14.88730 -14.55616 -14.29140 -14.19896 -14.15707 -14.04237 -14.00318 -13.83884 -13.82809 -13.56779 -13.41498 -13.21308 -13.19983 -13.14163 -13.02197 -12.72153 -12.57899 -12.20261 -12.19145 -12.01074 -11.90046 -11.76602 -11.48953 -11.38431 -11.06034 -10.85003 -10.80559 -10.75451 -10.37575 -10.05480 -10.03712 -9.94942 -9.11516 -8.60870 -0.70451 0.35913 0.39807 0.46131 0.81248 1.18071 1.35238 1.44076 1.49493 1.52244 1.66752 1.87062 1.91187 1.99192 2.10231 2.20380 2.57586 2.63752 3.02308 3.40412 3.55630 3.61451 3.67156 3.75013 3.80559 3.87908 3.97338 4.00418 4.06317 4.25959 4.28361 4.29459 4.36584 4.56272 4.59759 4.65440 4.68248 4.69904 4.71341 4.72347 4.74941 4.83244 4.84276 4.87376 4.88872 4.90083 4.93299 5.06216 5.09097 5.14824 5.21617 5.28038 5.41717 5.50911 5.50933 5.60538 5.65848 5.65930 5.74998 5.80769 5.94299 6.07415 6.40885 6.68505 6.69631 7.11571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.458 4.458 2 Si 1.091 2.909 3 C -0.454 4.454 4 C -0.475 4.475 5 C -0.190 4.190 6 N -0.339 5.339 7 C 0.035 3.965 8 C -0.026 4.026 9 N -0.622 5.622 10 C 0.554 3.446 11 O -0.566 6.566 12 C -0.146 4.146 13 C -0.069 4.069 14 C -0.124 4.124 15 C -0.022 4.022 16 C -0.060 4.060 17 C -0.109 4.109 18 C -0.135 4.135 19 C -0.118 4.118 20 C -0.077 4.077 21 O -0.551 6.551 22 Si 0.976 3.024 23 H -0.259 1.259 24 H -0.277 1.277 25 H -0.253 1.253 26 C -0.096 4.096 27 C -0.105 4.105 28 C -0.118 4.118 29 C -0.073 4.073 30 C 0.021 3.979 31 N -0.319 5.319 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.045 0.955 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.134 0.866 42 H 0.103 0.897 43 H 0.223 0.777 44 H 0.426 0.574 45 H 0.128 0.872 46 H 0.145 0.855 47 H 0.141 0.859 48 H 0.130 0.870 49 H 0.126 0.874 50 H 0.389 0.611 51 H 0.140 0.860 52 H 0.151 0.849 53 H 0.160 0.840 54 H 0.162 0.838 55 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.713 6.171 3.935 9.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.566 4.566 2 Si 1.281 2.719 3 C -0.563 4.563 4 C -0.579 4.579 5 C -0.353 4.353 6 N -0.121 5.121 7 C -0.114 4.114 8 C -0.131 4.131 9 N -0.268 5.268 10 C 0.344 3.656 11 O -0.446 6.446 12 C -0.150 4.150 13 C -0.088 4.088 14 C -0.142 4.142 15 C -0.022 4.022 16 C -0.060 4.060 17 C -0.127 4.127 18 C -0.152 4.152 19 C -0.119 4.119 20 C -0.188 4.188 21 O -0.358 6.358 22 Si 0.802 3.198 23 H -0.183 1.183 24 H -0.202 1.202 25 H -0.177 1.177 26 C -0.114 4.114 27 C -0.123 4.123 28 C -0.135 4.135 29 C -0.091 4.091 30 C -0.163 4.163 31 N -0.143 5.143 32 H 0.108 0.892 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.064 0.936 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.152 0.848 42 H 0.121 0.879 43 H 0.239 0.761 44 H 0.266 0.734 45 H 0.146 0.854 46 H 0.163 0.837 47 H 0.159 0.841 48 H 0.147 0.853 49 H 0.144 0.856 50 H 0.238 0.762 51 H 0.158 0.842 52 H 0.168 0.832 53 H 0.177 0.823 54 H 0.179 0.821 55 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -3.888 5.621 3.456 7.659 hybrid contribution -0.413 -0.524 -0.226 0.704 sum -4.301 5.097 3.230 7.410 Atomic orbital electron populations 1.26211 1.20416 1.04302 1.05643 0.78311 0.66501 0.64895 0.62209 1.26130 1.06674 1.17889 1.05595 1.26516 1.06144 1.07485 1.17789 1.27403 1.07028 0.80621 1.20292 1.48289 1.14805 1.07267 1.41774 1.22558 0.92702 0.93373 1.02814 1.17801 0.93782 0.90682 1.10823 1.42480 1.21830 1.06107 1.56398 1.18587 0.86285 0.81950 0.78810 1.90675 1.35763 1.75791 1.42382 1.19818 0.96060 0.94187 1.04896 1.21240 0.98432 0.92283 0.96796 1.21365 0.93120 1.00985 0.98733 1.19162 0.93212 0.93776 0.96079 1.18931 0.94463 0.93152 0.99498 1.21432 0.99086 0.92806 0.99382 1.21159 0.94566 1.00191 0.99310 1.20536 0.96248 0.95857 0.99242 1.24972 0.85426 1.07051 1.01353 1.86493 1.33559 1.91132 1.24652 0.85297 0.79041 0.74766 0.80738 1.18336 1.20235 1.17668 1.21148 0.98731 0.92539 0.99019 1.21572 0.92588 1.01236 0.96892 1.21483 0.99743 0.92006 1.00292 1.21511 0.91488 1.01403 0.94740 1.24309 0.93164 0.98763 1.00107 1.77383 1.21852 0.93314 1.21744 0.89155 0.90966 0.92089 0.90945 0.90706 0.89547 0.93596 0.91245 0.91918 0.84817 0.87897 0.76062 0.73366 0.85379 0.83729 0.84128 0.85259 0.85615 0.76233 0.84226 0.83173 0.82271 0.82060 0.80088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.97 8.65 113.37 0.98 3.95 16 2 Si 1.09 -7.51 12.78 68.60 0.88 -6.64 16 3 C -0.45 3.41 8.65 113.37 0.98 4.39 16 4 C -0.48 -0.78 8.65 113.37 0.98 0.20 16 5 C -0.19 0.96 5.59 127.77 0.71 1.68 16 6 N -0.34 -0.78 3.02 -182.91 -0.55 -1.33 16 7 C 0.03 -0.04 11.44 83.50 0.95 0.91 16 8 C -0.03 -0.13 6.90 37.64 0.26 0.13 16 9 N -0.62 -0.50 5.42 -306.74 -1.66 -2.16 16 10 C 0.55 3.64 7.74 86.74 0.67 4.31 16 11 O -0.57 -8.33 13.49 -4.04 -0.05 -8.38 16 12 C -0.15 -0.34 5.88 -20.06 -0.12 -0.45 16 13 C -0.07 -0.24 9.58 22.49 0.22 -0.03 16 14 C -0.12 -0.07 9.41 22.44 0.21 0.15 16 15 C -0.02 0.02 5.88 -20.00 -0.12 -0.10 16 16 C -0.06 0.05 5.88 -20.05 -0.12 -0.07 16 17 C -0.11 0.08 9.43 22.49 0.21 0.29 16 18 C -0.13 0.11 8.65 22.24 0.19 0.31 16 19 C -0.12 0.14 5.36 -19.82 -0.11 0.04 16 20 C -0.08 0.19 2.80 71.23 0.20 0.39 16 21 O -0.55 0.57 12.83 -148.98 -1.91 -1.34 16 22 Si 0.98 -1.77 25.13 68.60 1.72 -0.05 16 23 H -0.26 0.10 7.11 99.48 0.71 0.81 16 24 H -0.28 -0.55 7.11 99.48 0.71 0.16 16 25 H -0.25 0.45 7.04 99.48 0.70 1.15 16 26 C -0.10 0.19 9.67 22.23 0.21 0.40 16 27 C -0.11 0.29 9.43 22.49 0.21 0.51 16 28 C -0.12 0.50 9.41 22.44 0.21 0.71 16 29 C -0.07 0.31 9.53 22.49 0.21 0.53 16 30 C 0.02 0.26 10.84 85.34 0.92 1.18 16 31 N -0.32 -3.52 12.56 -56.77 -0.71 -4.23 16 32 H 0.09 -0.90 7.96 -2.39 -0.02 -0.92 16 33 H 0.07 -0.39 7.96 -2.38 -0.02 -0.41 16 34 H 0.06 -0.23 7.96 -2.39 -0.02 -0.25 16 35 H 0.07 -0.49 7.96 -2.39 -0.02 -0.51 16 36 H 0.07 -0.49 7.96 -2.39 -0.02 -0.51 16 37 H 0.09 -0.84 7.96 -2.39 -0.02 -0.86 16 38 H 0.04 0.31 7.96 -2.38 -0.02 0.29 16 39 H 0.07 0.05 7.96 -2.39 -0.02 0.04 16 40 H 0.06 0.17 7.96 -2.38 -0.02 0.15 16 41 H 0.13 -1.57 7.96 -2.39 -0.02 -1.59 16 42 H 0.10 -0.41 7.96 -2.38 -0.02 -0.43 16 43 H 0.22 -2.56 8.06 -2.91 -0.02 -2.58 16 44 H 0.43 -3.38 6.84 -92.71 -0.63 -4.01 16 45 H 0.13 0.68 7.64 -2.91 -0.02 0.65 16 46 H 0.15 -0.40 6.19 -2.91 -0.02 -0.42 16 47 H 0.14 -0.54 6.19 -2.91 -0.02 -0.56 16 48 H 0.13 -0.38 4.84 -2.91 -0.01 -0.39 16 49 H 0.13 -0.53 7.96 -2.39 -0.02 -0.55 16 50 H 0.39 -2.75 8.70 -74.06 -0.64 -3.39 16 51 H 0.14 -0.56 8.06 -2.91 -0.02 -0.59 16 52 H 0.15 -1.17 6.19 -2.91 -0.02 -1.19 16 53 H 0.16 -1.56 6.19 -2.91 -0.02 -1.58 16 54 H 0.16 -1.92 6.39 -2.91 -0.02 -1.94 16 55 H 0.18 2.83 5.91 -2.91 -0.02 2.82 16 Total: 0.00 -27.34 452.57 6.01 -21.33 By element: Atomic # 1 Polarization: -17.03 SS G_CDS: 0.42 Total: -16.61 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: 7.89 Total: 19.42 kcal Atomic # 7 Polarization: -4.79 SS G_CDS: -2.93 Total: -7.72 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: -1.97 Total: -9.72 kcal Atomic # 14 Polarization: -9.29 SS G_CDS: 2.60 Total: -6.69 kcal Total: -27.34 6.01 -21.33 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_13158362.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.507 kcal (2) G-P(sol) polarization free energy of solvation -27.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds