Wall clock time and date at job start Sun Mar 7 2021 10:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86305 * 1 3 3 C 1.86306 * 109.46823 * 2 1 4 4 C 1.86296 * 109.47257 * 240.00000 * 2 1 3 5 5 C 1.86299 * 109.47036 * 119.99561 * 2 1 3 6 6 N 1.46506 * 109.46721 * 60.00724 * 5 2 1 7 7 C 1.35821 * 126.05348 * 89.99963 * 6 5 2 8 8 C 1.35780 * 107.55381 * 180.02562 * 7 6 5 9 9 N 1.40699 * 126.08180 * 179.97438 * 8 7 6 10 10 C 1.34770 * 120.00148 * 180.02562 * 9 8 7 11 11 O 1.21676 * 119.99890 * 359.97438 * 10 9 8 12 12 C 1.47042 * 119.99945 * 180.02562 * 10 9 8 13 13 C 1.35879 * 125.42713 * 180.02562 * 12 10 9 14 14 C 1.41588 * 107.72865 * 179.97438 * 13 12 10 15 15 C 1.40073 * 133.38110 * 180.31572 * 14 13 12 16 16 C 1.36473 * 119.82685 * 180.14979 * 15 14 13 17 17 C 1.38899 * 120.61501 * 359.49155 * 16 15 14 18 18 C 1.50708 * 119.67281 * 180.23640 * 17 16 15 19 19 O 1.42899 * 109.46986 * 245.00138 * 18 17 16 20 20 Si 1.86294 * 109.47065 * 5.00168 * 18 17 16 21 21 H 1.48501 * 109.47060 * 60.00337 * 20 18 17 22 22 H 1.48504 * 109.46951 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47309 * 299.99816 * 20 18 17 24 24 C 1.37712 * 120.64960 * 0.26107 * 17 16 15 25 25 C 1.39182 * 119.80467 * 359.97438 * 24 17 16 26 26 N 1.37502 * 133.17599 * 180.02562 * 25 24 17 27 27 C 1.40264 * 107.83836 * 0.26285 * 8 7 6 28 28 N 1.30837 * 108.33266 * 359.55101 * 27 8 7 29 29 H 1.08994 * 109.47192 * 299.99926 * 1 2 3 30 30 H 1.09003 * 109.46978 * 60.00495 * 1 2 3 31 31 H 1.08998 * 109.46819 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46723 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.46939 * 299.99529 * 3 2 1 34 34 H 1.09002 * 109.46978 * 59.99783 * 3 2 1 35 35 H 1.08998 * 109.47459 * 299.99918 * 4 2 1 36 36 H 1.09007 * 109.47240 * 60.00268 * 4 2 1 37 37 H 1.09004 * 109.47068 * 179.97438 * 4 2 1 38 38 H 1.08994 * 109.47549 * 300.00294 * 5 2 1 39 39 H 1.09002 * 109.47051 * 179.97438 * 5 2 1 40 40 H 1.07998 * 126.22369 * 0.05281 * 7 6 5 41 41 H 0.97005 * 119.99431 * 359.97438 * 9 8 7 42 42 H 1.08003 * 126.13218 * 359.97438 * 13 12 10 43 43 H 1.07994 * 120.08471 * 359.90141 * 15 14 13 44 44 H 1.08002 * 119.69380 * 179.77823 * 16 15 14 45 45 H 1.09003 * 109.46760 * 125.00489 * 18 17 16 46 46 H 0.96706 * 113.99894 * 60.00220 * 19 18 17 47 47 H 1.07997 * 120.09784 * 180.02562 * 24 17 16 48 48 H 0.96996 * 125.61325 * 359.97438 * 26 25 24 49 49 H 1.07995 * 125.83628 * 179.71557 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4840 -0.8781 1.5212 6 7 1.9957 -2.2594 1.5211 7 6 2.6260 -3.3300 0.9721 8 6 1.8448 -4.4196 1.1869 9 7 2.1281 -5.7359 0.7786 10 6 1.2614 -6.7294 1.0579 11 8 0.2341 -6.4882 1.6636 12 6 1.5579 -8.1051 0.6316 13 6 0.7654 -9.1864 0.8531 14 6 1.4068 -10.3144 0.2867 15 6 1.0693 -11.6711 0.2014 16 6 1.9148 -12.5432 -0.4208 17 6 3.1048 -12.0967 -0.9810 18 6 4.0203 -13.0773 -1.6678 19 8 5.2486 -13.1698 -0.9434 20 14 3.2057 -14.7517 -1.7254 21 1 1.9292 -14.6555 -2.4782 22 1 4.1075 -15.7178 -2.4027 23 1 2.9309 -15.2164 -0.3421 24 6 3.4565 -10.7669 -0.9146 25 6 2.6130 -9.8590 -0.2811 26 7 2.6859 -8.5040 -0.0590 27 6 0.7018 -3.9984 1.8825 28 7 0.7961 -2.7096 2.0868 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 3.5740 1.7565 -0.0005 33 1 2.1207 2.2703 -0.8901 34 1 2.1206 2.2704 0.8900 35 1 2.1208 -1.9059 -1.5211 36 1 2.1208 -0.3643 -2.4111 37 1 3.5741 -0.8778 -1.5213 38 1 2.1207 -0.3643 2.4111 39 1 3.5740 -0.8785 1.5210 40 1 3.5759 -3.3171 0.4585 41 1 2.9470 -5.9280 0.2954 42 1 -0.1836 -9.1855 1.3688 43 1 0.1442 -12.0269 0.6304 44 1 1.6541 -13.5895 -0.4822 45 1 4.2220 -12.7361 -2.6832 46 1 5.1448 -13.4683 -0.0295 47 1 4.3837 -10.4294 -1.3536 48 1 3.4104 -7.9237 -0.3401 49 1 -0.1150 -4.6305 2.1981 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608520_13158378.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:22:26 Heat of formation + Delta-G solvation = 38.122291 kcal Electronic energy + Delta-G solvation = -29962.998221 eV Core-core repulsion = 25823.069880 eV Total energy + Delta-G solvation = -4139.928341 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 372.153 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.78557 -42.20338 -40.34911 -38.97894 -36.92380 -36.01689 -33.72049 -33.30454 -31.41589 -30.45112 -30.30492 -29.71578 -28.61691 -28.47546 -27.54345 -26.48064 -24.59192 -23.41511 -22.49680 -22.16780 -21.72584 -20.88815 -19.44534 -18.46998 -18.43497 -17.88105 -16.87544 -16.76019 -16.71067 -16.30970 -16.10190 -15.74997 -15.63203 -15.14947 -15.12943 -15.08566 -14.86415 -14.46718 -14.40374 -14.34368 -14.27927 -14.11764 -13.97933 -13.85276 -13.59646 -13.44476 -13.28546 -13.20680 -13.19895 -12.61671 -12.58089 -12.24800 -12.18457 -12.00869 -11.70564 -11.53556 -11.42211 -11.18900 -11.07385 -10.96446 -10.94602 -10.46535 -10.06839 -9.36978 -8.89881 -8.61023 -0.38861 0.49863 0.67725 1.00894 1.13643 1.23002 1.44121 1.46306 1.52764 1.63902 1.71345 1.78913 1.83514 1.92650 2.08508 2.37730 2.39748 2.75987 3.39863 3.49452 3.62398 3.64481 3.68427 3.81590 3.97418 4.19114 4.21817 4.27388 4.42034 4.43900 4.45131 4.52890 4.54889 4.55476 4.58049 4.59195 4.65683 4.69694 4.74500 4.77729 4.87553 4.95176 5.01261 5.29588 5.31757 5.36532 5.38681 5.50680 5.54973 5.58828 5.85556 5.94230 5.96391 6.16187 6.30744 6.51185 6.75299 6.98183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.447 4.447 2 Si 1.019 2.981 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.170 4.170 6 N -0.342 5.342 7 C 0.018 3.982 8 C -0.007 4.007 9 N -0.640 5.640 10 C 0.587 3.413 11 O -0.506 6.506 12 C 0.015 3.985 13 C -0.095 4.095 14 C -0.117 4.117 15 C -0.049 4.049 16 C -0.155 4.155 17 C -0.088 4.088 18 C -0.080 4.080 19 O -0.539 6.539 20 Si 0.953 3.047 21 H -0.249 1.249 22 H -0.256 1.256 23 H -0.251 1.251 24 C -0.101 4.101 25 C 0.117 3.883 26 N -0.579 5.579 27 C 0.049 3.951 28 N -0.279 5.279 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.106 0.894 39 H 0.099 0.901 40 H 0.176 0.824 41 H 0.405 0.595 42 H 0.160 0.840 43 H 0.132 0.868 44 H 0.123 0.877 45 H 0.118 0.882 46 H 0.377 0.623 47 H 0.129 0.871 48 H 0.417 0.583 49 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.375 1.148 -2.800 5.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.555 4.555 2 Si 1.214 2.786 3 C -0.558 4.558 4 C -0.558 4.558 5 C -0.335 4.335 6 N -0.125 5.125 7 C -0.131 4.131 8 C -0.111 4.111 9 N -0.284 5.284 10 C 0.374 3.626 11 O -0.381 6.381 12 C -0.094 4.094 13 C -0.122 4.122 14 C -0.122 4.122 15 C -0.067 4.067 16 C -0.173 4.173 17 C -0.090 4.090 18 C -0.191 4.191 19 O -0.344 6.344 20 Si 0.776 3.224 21 H -0.173 1.173 22 H -0.180 1.180 23 H -0.174 1.174 24 C -0.122 4.122 25 C 0.007 3.993 26 N -0.184 5.184 27 C -0.137 4.137 28 N -0.102 5.102 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.124 0.876 39 H 0.117 0.883 40 H 0.193 0.807 41 H 0.239 0.761 42 H 0.178 0.822 43 H 0.149 0.851 44 H 0.141 0.859 45 H 0.136 0.864 46 H 0.225 0.775 47 H 0.147 0.853 48 H 0.255 0.745 49 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 3.067 1.988 -2.411 4.378 hybrid contribution 1.352 -0.238 -0.168 1.383 sum 4.419 1.750 -2.579 5.407 Atomic orbital electron populations 1.26070 1.19995 1.04940 1.04463 0.79379 0.68150 0.66420 0.64695 1.26096 1.06379 1.18196 1.05131 1.26133 1.06115 1.08269 1.15289 1.26983 1.04471 0.83138 1.18940 1.48005 1.15601 1.06403 1.42468 1.21868 1.00136 0.86508 1.04598 1.17593 0.98807 0.84305 1.10441 1.42556 1.23587 1.05119 1.57123 1.17104 0.83371 0.82522 0.79593 1.90770 1.25323 1.82074 1.39899 1.19897 0.90610 0.93905 1.04945 1.20983 1.00267 0.89237 1.01677 1.18214 0.95609 0.94255 1.04088 1.20365 0.99063 0.90566 0.96745 1.20543 0.95195 0.99747 1.01859 1.20002 0.95628 0.94128 0.99243 1.25004 0.88902 1.06940 0.98256 1.86518 1.28477 1.90516 1.28900 0.85624 0.79419 0.75720 0.81640 1.17271 1.17996 1.17444 1.19861 0.99208 0.91194 1.01887 1.18307 0.97045 0.83225 1.00733 1.41886 1.19770 1.07059 1.49720 1.24483 0.98803 0.91810 0.98584 1.77485 1.01099 1.12201 1.19436 0.90982 0.91193 0.90986 0.90971 0.90543 0.90820 0.91161 0.90695 0.91132 0.87580 0.88262 0.80676 0.76088 0.82226 0.85051 0.85907 0.86393 0.77539 0.85330 0.74465 0.77782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.17 8.65 101.05 0.87 1.04 16 2 Si 1.02 -3.34 12.79 -169.99 -2.17 -5.51 16 3 C -0.45 1.38 8.65 101.05 0.87 2.26 16 4 C -0.45 1.15 8.65 101.05 0.87 2.02 16 5 C -0.17 0.37 5.59 59.85 0.33 0.70 16 6 N -0.34 -0.28 3.01 -9.16 -0.03 -0.31 16 7 C 0.02 -0.01 11.44 -16.67 -0.19 -0.20 16 8 C -0.01 -0.01 6.90 -83.90 -0.58 -0.59 16 9 N -0.64 0.27 5.47 -11.11 -0.06 0.21 16 10 C 0.59 1.10 7.77 -12.69 -0.10 1.00 16 11 O -0.51 -2.50 13.99 5.21 0.07 -2.43 16 12 C 0.02 0.01 6.96 -82.30 -0.57 -0.56 16 13 C -0.09 -0.15 10.53 -39.15 -0.41 -0.56 16 14 C -0.12 -0.16 6.16 -106.93 -0.66 -0.82 16 15 C -0.05 -0.02 10.06 -39.53 -0.40 -0.42 16 16 C -0.15 0.01 8.59 -39.97 -0.34 -0.33 16 17 C -0.09 0.02 5.36 -104.57 -0.56 -0.54 16 18 C -0.08 0.10 2.79 36.01 0.10 0.20 16 19 O -0.54 0.25 12.83 -35.23 -0.45 -0.20 16 20 Si 0.95 -1.06 25.11 -169.99 -4.27 -5.33 16 21 H -0.25 0.11 7.11 56.52 0.40 0.51 16 22 H -0.26 -0.12 7.11 56.52 0.40 0.29 16 23 H -0.25 0.24 7.03 56.52 0.40 0.64 16 24 C -0.10 0.01 9.69 -39.42 -0.38 -0.37 16 25 C 0.12 0.06 7.25 -83.97 -0.61 -0.55 16 26 N -0.58 0.70 6.07 -7.36 -0.04 0.65 16 27 C 0.05 0.19 10.84 -17.21 -0.19 0.00 16 28 N -0.28 -1.09 12.56 30.71 0.39 -0.70 16 29 H 0.07 -0.01 7.96 -51.93 -0.41 -0.42 16 30 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 31 H 0.07 0.11 7.96 -51.93 -0.41 -0.30 16 32 H 0.07 -0.26 7.96 -51.93 -0.41 -0.67 16 33 H 0.08 -0.21 7.96 -51.93 -0.41 -0.62 16 34 H 0.07 -0.22 7.96 -51.93 -0.41 -0.63 16 35 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 36 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 37 H 0.07 -0.24 7.96 -51.93 -0.41 -0.66 16 38 H 0.11 -0.22 7.96 -51.93 -0.41 -0.63 16 39 H 0.10 -0.43 7.96 -51.93 -0.41 -0.85 16 40 H 0.18 -0.73 8.06 -52.49 -0.42 -1.15 16 41 H 0.40 -1.61 7.88 -40.82 -0.32 -1.93 16 42 H 0.16 0.13 8.06 -52.48 -0.42 -0.29 16 43 H 0.13 -0.20 8.06 -52.49 -0.42 -0.62 16 44 H 0.12 -0.16 4.80 -52.49 -0.25 -0.42 16 45 H 0.12 -0.24 7.96 -51.93 -0.41 -0.66 16 46 H 0.38 -1.31 8.70 45.56 0.40 -0.91 16 47 H 0.13 -0.18 8.06 -52.49 -0.42 -0.61 16 48 H 0.42 -1.86 8.12 -40.82 -0.33 -2.19 16 49 H 0.21 0.94 5.91 -52.49 -0.31 0.63 16 LS Contribution 412.16 15.07 6.21 6.21 Total: 0.00 -9.62 412.16 -8.56 -18.18 By element: Atomic # 1 Polarization: -6.79 SS G_CDS: -6.27 Total: -13.06 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -1.93 Total: 2.30 kcal Atomic # 7 Polarization: -0.41 SS G_CDS: 0.25 Total: -0.16 kcal Atomic # 8 Polarization: -2.25 SS G_CDS: -0.38 Total: -2.63 kcal Atomic # 14 Polarization: -4.40 SS G_CDS: -6.44 Total: -10.84 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -9.62 -8.56 -18.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_13158378.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.304 kcal (2) G-P(sol) polarization free energy of solvation -9.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds