Wall clock time and date at job start Sun Mar 7 2021 10:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86305 * 1 3 3 C 1.86306 * 109.46823 * 2 1 4 4 C 1.86296 * 109.47257 * 240.00000 * 2 1 3 5 5 C 1.86299 * 109.47036 * 119.99561 * 2 1 3 6 6 N 1.46506 * 109.46721 * 60.00724 * 5 2 1 7 7 C 1.35821 * 126.05348 * 89.99963 * 6 5 2 8 8 C 1.35780 * 107.55381 * 180.02562 * 7 6 5 9 9 N 1.40699 * 126.08180 * 179.97438 * 8 7 6 10 10 C 1.34770 * 120.00148 * 180.02562 * 9 8 7 11 11 O 1.21676 * 119.99890 * 359.97438 * 10 9 8 12 12 C 1.47042 * 119.99945 * 180.02562 * 10 9 8 13 13 C 1.35879 * 125.42713 * 180.02562 * 12 10 9 14 14 C 1.41588 * 107.72865 * 179.97438 * 13 12 10 15 15 C 1.40073 * 133.38110 * 180.31572 * 14 13 12 16 16 C 1.36473 * 119.82685 * 180.14979 * 15 14 13 17 17 C 1.38899 * 120.61501 * 359.49155 * 16 15 14 18 18 C 1.50708 * 119.67281 * 180.23640 * 17 16 15 19 19 O 1.42899 * 109.46986 * 245.00138 * 18 17 16 20 20 Si 1.86294 * 109.47065 * 5.00168 * 18 17 16 21 21 H 1.48501 * 109.47060 * 60.00337 * 20 18 17 22 22 H 1.48504 * 109.46951 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47309 * 299.99816 * 20 18 17 24 24 C 1.37712 * 120.64960 * 0.26107 * 17 16 15 25 25 C 1.39182 * 119.80467 * 359.97438 * 24 17 16 26 26 N 1.37502 * 133.17599 * 180.02562 * 25 24 17 27 27 C 1.40264 * 107.83836 * 0.26285 * 8 7 6 28 28 N 1.30837 * 108.33266 * 359.55101 * 27 8 7 29 29 H 1.08994 * 109.47192 * 299.99926 * 1 2 3 30 30 H 1.09003 * 109.46978 * 60.00495 * 1 2 3 31 31 H 1.08998 * 109.46819 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46723 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.46939 * 299.99529 * 3 2 1 34 34 H 1.09002 * 109.46978 * 59.99783 * 3 2 1 35 35 H 1.08998 * 109.47459 * 299.99918 * 4 2 1 36 36 H 1.09007 * 109.47240 * 60.00268 * 4 2 1 37 37 H 1.09004 * 109.47068 * 179.97438 * 4 2 1 38 38 H 1.08994 * 109.47549 * 300.00294 * 5 2 1 39 39 H 1.09002 * 109.47051 * 179.97438 * 5 2 1 40 40 H 1.07998 * 126.22369 * 0.05281 * 7 6 5 41 41 H 0.97005 * 119.99431 * 359.97438 * 9 8 7 42 42 H 1.08003 * 126.13218 * 359.97438 * 13 12 10 43 43 H 1.07994 * 120.08471 * 359.90141 * 15 14 13 44 44 H 1.08002 * 119.69380 * 179.77823 * 16 15 14 45 45 H 1.09003 * 109.46760 * 125.00489 * 18 17 16 46 46 H 0.96706 * 113.99894 * 60.00220 * 19 18 17 47 47 H 1.07997 * 120.09784 * 180.02562 * 24 17 16 48 48 H 0.96996 * 125.61325 * 359.97438 * 26 25 24 49 49 H 1.07995 * 125.83628 * 179.71557 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4840 -0.8781 1.5212 6 7 1.9957 -2.2594 1.5211 7 6 2.6260 -3.3300 0.9721 8 6 1.8448 -4.4196 1.1869 9 7 2.1281 -5.7359 0.7786 10 6 1.2614 -6.7294 1.0579 11 8 0.2341 -6.4882 1.6636 12 6 1.5579 -8.1051 0.6316 13 6 0.7654 -9.1864 0.8531 14 6 1.4068 -10.3144 0.2867 15 6 1.0693 -11.6711 0.2014 16 6 1.9148 -12.5432 -0.4208 17 6 3.1048 -12.0967 -0.9810 18 6 4.0203 -13.0773 -1.6678 19 8 5.2486 -13.1698 -0.9434 20 14 3.2057 -14.7517 -1.7254 21 1 1.9292 -14.6555 -2.4782 22 1 4.1075 -15.7178 -2.4027 23 1 2.9309 -15.2164 -0.3421 24 6 3.4565 -10.7669 -0.9146 25 6 2.6130 -9.8590 -0.2811 26 7 2.6859 -8.5040 -0.0590 27 6 0.7018 -3.9984 1.8825 28 7 0.7961 -2.7096 2.0868 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 3.5740 1.7565 -0.0005 33 1 2.1207 2.2703 -0.8901 34 1 2.1206 2.2704 0.8900 35 1 2.1208 -1.9059 -1.5211 36 1 2.1208 -0.3643 -2.4111 37 1 3.5741 -0.8778 -1.5213 38 1 2.1207 -0.3643 2.4111 39 1 3.5740 -0.8785 1.5210 40 1 3.5759 -3.3171 0.4585 41 1 2.9470 -5.9280 0.2954 42 1 -0.1836 -9.1855 1.3688 43 1 0.1442 -12.0269 0.6304 44 1 1.6541 -13.5895 -0.4822 45 1 4.2220 -12.7361 -2.6832 46 1 5.1448 -13.4683 -0.0295 47 1 4.3837 -10.4294 -1.3536 48 1 3.4104 -7.9237 -0.3401 49 1 -0.1150 -4.6305 2.1981 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_13158378.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:22:24 Heat of formation + Delta-G solvation = 40.496100 kcal Electronic energy + Delta-G solvation = -29962.895285 eV Core-core repulsion = 25823.069880 eV Total energy + Delta-G solvation = -4139.825405 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 372.153 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.80682 -42.25743 -40.44755 -38.94326 -36.86808 -36.11211 -33.74790 -33.29330 -31.44441 -30.43460 -30.31251 -29.53274 -28.38771 -28.35674 -27.50012 -26.45054 -24.59889 -23.44240 -22.52951 -22.16363 -21.76341 -20.95346 -19.45618 -18.48986 -18.37357 -17.85038 -16.84716 -16.80731 -16.76898 -16.26421 -16.09029 -15.75487 -15.60464 -15.20589 -15.14411 -15.08216 -14.81130 -14.48748 -14.27143 -14.20918 -14.16630 -14.03288 -13.88168 -13.84111 -13.43956 -13.21966 -13.18514 -13.15803 -13.03606 -12.58019 -12.51619 -12.27068 -12.12711 -11.98473 -11.80438 -11.48275 -11.43181 -11.36573 -10.95542 -10.86010 -10.82002 -10.37999 -10.07503 -9.37630 -8.89927 -8.64071 -0.41413 0.51193 0.67719 0.96367 1.23250 1.29572 1.52162 1.59028 1.64346 1.69205 1.72786 1.86162 1.93619 1.99529 2.15928 2.30568 2.56332 2.76577 3.47531 3.59292 3.71457 3.71711 3.75498 3.94323 4.01064 4.21926 4.25356 4.29236 4.44067 4.46245 4.58595 4.66538 4.68386 4.71279 4.72184 4.73854 4.81463 4.82294 4.86245 4.87431 4.88100 4.95261 4.99369 5.31132 5.40132 5.50445 5.52456 5.56491 5.58946 5.64488 5.69896 5.96737 6.02279 6.23188 6.42086 6.63910 6.74605 6.93649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.476 4.476 2 Si 1.095 2.905 3 C -0.455 4.455 4 C -0.459 4.459 5 C -0.190 4.190 6 N -0.339 5.339 7 C 0.038 3.962 8 C -0.028 4.028 9 N -0.621 5.621 10 C 0.584 3.416 11 O -0.546 6.546 12 C 0.017 3.983 13 C -0.114 4.114 14 C -0.136 4.136 15 C -0.059 4.059 16 C -0.160 4.160 17 C -0.090 4.090 18 C -0.074 4.074 19 O -0.551 6.551 20 Si 0.981 3.019 21 H -0.259 1.259 22 H -0.278 1.278 23 H -0.252 1.252 24 C -0.102 4.102 25 C 0.111 3.889 26 N -0.562 5.562 27 C 0.025 3.975 28 N -0.316 5.316 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.046 0.954 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.134 0.866 40 H 0.223 0.777 41 H 0.423 0.577 42 H 0.156 0.844 43 H 0.143 0.857 44 H 0.133 0.867 45 H 0.129 0.871 46 H 0.389 0.611 47 H 0.144 0.856 48 H 0.433 0.567 49 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.406 1.852 -3.869 8.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.580 4.580 2 Si 1.284 2.716 3 C -0.564 4.564 4 C -0.567 4.567 5 C -0.354 4.354 6 N -0.121 5.121 7 C -0.112 4.112 8 C -0.133 4.133 9 N -0.267 5.267 10 C 0.372 3.628 11 O -0.423 6.423 12 C -0.093 4.093 13 C -0.141 4.141 14 C -0.141 4.141 15 C -0.078 4.078 16 C -0.179 4.179 17 C -0.092 4.092 18 C -0.185 4.185 19 O -0.358 6.358 20 Si 0.806 3.194 21 H -0.183 1.183 22 H -0.204 1.204 23 H -0.176 1.176 24 C -0.123 4.123 25 C 0.000 4.000 26 N -0.169 5.169 27 C -0.160 4.160 28 N -0.140 5.140 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.122 0.878 39 H 0.152 0.848 40 H 0.239 0.761 41 H 0.261 0.739 42 H 0.173 0.827 43 H 0.160 0.840 44 H 0.151 0.849 45 H 0.146 0.854 46 H 0.238 0.762 47 H 0.162 0.838 48 H 0.275 0.725 49 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 6.100 2.709 -3.482 7.528 hybrid contribution 0.394 -0.409 0.156 0.589 sum 6.494 2.300 -3.325 7.650 Atomic orbital electron populations 1.26518 1.24417 1.03067 1.03992 0.78258 0.63997 0.65883 0.63471 1.26145 1.07334 1.17881 1.05031 1.26227 1.07460 1.07660 1.15318 1.27415 1.06710 0.81666 1.19559 1.48313 1.14631 1.07723 1.41388 1.22559 1.00743 0.85073 1.02798 1.17726 0.98723 0.85488 1.11316 1.42354 1.23776 1.04110 1.56434 1.17253 0.83158 0.83153 0.79252 1.90762 1.27064 1.82666 1.41794 1.19703 0.91238 0.93182 1.05193 1.21092 1.00646 0.89959 1.02438 1.18401 0.96273 0.94646 1.04737 1.20577 0.99786 0.90425 0.97014 1.20723 0.95285 1.00214 1.01658 1.20157 0.95632 0.94415 0.99020 1.24975 0.88521 1.06350 0.98640 1.86488 1.28785 1.90592 1.29979 0.85228 0.78161 0.75122 0.80862 1.18300 1.20406 1.17625 1.20032 0.99570 0.91043 1.01611 1.18447 0.96945 0.83810 1.00798 1.41760 1.19517 1.06802 1.48805 1.24332 0.99644 0.92087 0.99960 1.77414 1.03174 1.12355 1.21105 0.91862 0.91281 0.93490 0.89597 0.90745 0.90919 0.92085 0.91007 0.89234 0.87797 0.84838 0.76092 0.73851 0.82682 0.83957 0.84941 0.85375 0.76163 0.83804 0.72542 0.79815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 -0.45 8.65 113.37 0.98 0.53 16 2 Si 1.09 -8.25 12.79 68.60 0.88 -7.37 16 3 C -0.46 3.59 8.65 113.37 0.98 4.57 16 4 C -0.46 3.20 8.65 113.37 0.98 4.18 16 5 C -0.19 1.12 5.59 127.77 0.71 1.84 16 6 N -0.34 -0.39 3.01 -182.90 -0.55 -0.94 16 7 C 0.04 -0.09 11.44 83.51 0.96 0.86 16 8 C -0.03 -0.10 6.90 37.64 0.26 0.16 16 9 N -0.62 0.50 5.47 -307.31 -1.68 -1.18 16 10 C 0.58 3.03 7.77 86.55 0.67 3.71 16 11 O -0.55 -7.04 13.99 -4.27 -0.06 -7.10 16 12 C 0.02 0.04 6.96 39.91 0.28 0.32 16 13 C -0.11 -0.55 10.53 22.55 0.24 -0.31 16 14 C -0.14 -0.48 6.16 -21.36 -0.13 -0.62 16 15 C -0.06 -0.08 10.06 22.30 0.22 0.15 16 16 C -0.16 0.04 8.59 22.02 0.19 0.22 16 17 C -0.09 0.10 5.36 -19.83 -0.11 -0.01 16 18 C -0.07 0.24 2.79 71.24 0.20 0.44 16 19 O -0.55 1.08 12.83 -148.98 -1.91 -0.83 16 20 Si 0.98 -2.37 25.11 68.60 1.72 -0.65 16 21 H -0.26 0.23 7.11 99.48 0.71 0.94 16 22 H -0.28 -0.37 7.11 99.48 0.71 0.33 16 23 H -0.25 0.58 7.03 99.48 0.70 1.28 16 24 C -0.10 0.12 9.69 22.37 0.22 0.34 16 25 C 0.11 0.09 7.25 39.13 0.28 0.37 16 26 N -0.56 1.59 6.07 -177.19 -1.08 0.51 16 27 C 0.02 0.25 10.84 85.33 0.92 1.18 16 28 N -0.32 -3.05 12.56 -56.76 -0.71 -3.77 16 29 H 0.06 0.13 7.96 -2.39 -0.02 0.11 16 30 H 0.07 0.02 7.96 -2.39 -0.02 0.00 16 31 H 0.05 0.28 7.96 -2.39 -0.02 0.26 16 32 H 0.08 -0.86 7.96 -2.39 -0.02 -0.88 16 33 H 0.07 -0.51 7.96 -2.39 -0.02 -0.53 16 34 H 0.07 -0.52 7.96 -2.39 -0.02 -0.54 16 35 H 0.06 -0.27 7.96 -2.39 -0.02 -0.29 16 36 H 0.07 -0.41 7.96 -2.38 -0.02 -0.43 16 37 H 0.09 -0.93 7.96 -2.38 -0.02 -0.95 16 38 H 0.10 -0.50 7.96 -2.39 -0.02 -0.52 16 39 H 0.13 -1.67 7.96 -2.39 -0.02 -1.69 16 40 H 0.22 -2.79 8.06 -2.91 -0.02 -2.82 16 41 H 0.42 -3.96 7.88 -92.70 -0.73 -4.69 16 42 H 0.16 0.70 8.06 -2.91 -0.02 0.68 16 43 H 0.14 -0.29 8.06 -2.91 -0.02 -0.32 16 44 H 0.13 -0.38 4.80 -2.91 -0.01 -0.39 16 45 H 0.13 -0.69 7.96 -2.39 -0.02 -0.70 16 46 H 0.39 -3.04 8.70 -74.05 -0.64 -3.68 16 47 H 0.14 -0.66 8.06 -2.91 -0.02 -0.69 16 48 H 0.43 -4.46 8.12 -92.71 -0.75 -5.21 16 49 H 0.19 2.49 5.91 -2.91 -0.02 2.48 16 Total: 0.00 -25.75 412.16 4.10 -21.65 By element: Atomic # 1 Polarization: -17.89 SS G_CDS: -0.37 Total: -18.26 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: 7.86 Total: 17.94 kcal Atomic # 7 Polarization: -1.36 SS G_CDS: -4.02 Total: -5.38 kcal Atomic # 8 Polarization: -5.96 SS G_CDS: -1.97 Total: -7.93 kcal Atomic # 14 Polarization: -10.62 SS G_CDS: 2.60 Total: -8.02 kcal Total: -25.75 4.10 -21.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_13158378.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.145 kcal (2) G-P(sol) polarization free energy of solvation -25.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds