Wall clock time and date at job start Sun Mar 7 2021 10:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86298 * 109.47206 * 2 1 4 4 C 1.86300 * 109.46852 * 240.00170 * 2 1 3 5 5 C 1.86297 * 109.47213 * 120.00003 * 2 1 3 6 6 N 1.46505 * 109.47163 * 60.00039 * 5 2 1 7 7 C 1.35816 * 126.05533 * 89.99631 * 6 5 2 8 8 C 1.35762 * 107.56266 * 179.97438 * 7 6 5 9 9 N 1.40725 * 126.08560 * 180.02562 * 8 7 6 10 10 C 1.34775 * 119.99768 * 179.97438 * 9 8 7 11 11 O 1.21608 * 120.00583 * 359.97438 * 10 9 8 12 12 C 1.47553 * 119.99522 * 179.97438 * 10 9 8 13 13 C 1.39432 * 120.12327 * 359.97438 * 12 10 9 14 14 C 1.39218 * 119.75526 * 179.97438 * 13 12 10 15 15 C 1.47815 * 119.99700 * 179.97438 * 14 13 12 16 16 C 1.35939 * 125.93060 * 180.02562 * 15 14 13 17 17 C 1.40969 * 106.74297 * 180.30302 * 16 15 14 18 18 C 1.34710 * 107.02592 * 359.56894 * 17 16 15 19 19 C 1.50702 * 125.66065 * 180.15940 * 18 17 16 20 20 O 1.42896 * 109.47249 * 300.29654 * 19 18 17 21 21 Si 1.86302 * 109.46817 * 180.30072 * 19 18 17 22 22 H 1.48503 * 109.47434 * 180.02562 * 21 19 18 23 23 H 1.48505 * 109.47257 * 299.99562 * 21 19 18 24 24 H 1.48494 * 109.47540 * 59.99531 * 21 19 18 25 25 O 1.34337 * 108.67196 * 0.43331 * 18 17 16 26 26 C 1.39802 * 120.00235 * 0.26057 * 14 13 12 27 27 C 1.37819 * 120.24162 * 359.48424 * 26 14 13 28 28 C 1.38769 * 120.24731 * 0.51289 * 27 26 14 29 29 O 1.35651 * 120.00124 * 179.76548 * 28 27 26 30 30 C 1.40266 * 107.83763 * 0.26544 * 8 7 6 31 31 N 1.30838 * 108.33309 * 359.55097 * 30 8 7 32 32 H 1.09001 * 109.46982 * 300.00321 * 1 2 3 33 33 H 1.08997 * 109.47239 * 59.99713 * 1 2 3 34 34 H 1.08997 * 109.47329 * 180.02562 * 1 2 3 35 35 H 1.08999 * 109.47260 * 180.02562 * 3 2 1 36 36 H 1.09007 * 109.47082 * 300.00271 * 3 2 1 37 37 H 1.09001 * 109.47411 * 59.99942 * 3 2 1 38 38 H 1.08997 * 109.46959 * 299.99989 * 4 2 1 39 39 H 1.08997 * 109.47103 * 60.00034 * 4 2 1 40 40 H 1.08999 * 109.46890 * 179.97438 * 4 2 1 41 41 H 1.08999 * 109.47092 * 300.00241 * 5 2 1 42 42 H 1.08999 * 109.47122 * 180.02562 * 5 2 1 43 43 H 1.08009 * 126.22071 * 359.97438 * 7 6 5 44 44 H 0.96997 * 119.99844 * 359.97438 * 9 8 7 45 45 H 1.07991 * 120.11800 * 359.95930 * 13 12 10 46 46 H 1.08002 * 126.62506 * 0.03297 * 16 15 14 47 47 H 1.07992 * 126.48474 * 179.73642 * 17 16 15 48 48 H 1.08994 * 109.47465 * 60.30412 * 19 18 17 49 49 H 0.96697 * 114.00222 * 180.02562 * 20 19 18 50 50 H 1.07995 * 119.87745 * 179.74471 * 26 14 13 51 51 H 1.07998 * 119.87776 * 180.23911 * 27 26 14 52 52 H 1.08000 * 125.83653 * 179.72510 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8782 -1.5212 5 6 2.4840 -0.8782 1.5211 6 7 1.9957 -2.2595 1.5211 7 6 2.6257 -3.3301 0.9720 8 6 1.8453 -4.4198 1.1879 9 7 2.1293 -5.7365 0.7806 10 6 1.2635 -6.7304 1.0619 11 8 0.2372 -6.4895 1.6680 12 6 1.5611 -8.1109 0.6344 13 6 2.7369 -8.3900 -0.0612 14 6 3.0103 -9.6954 -0.4604 15 6 4.2549 -9.9971 -1.1985 16 6 4.6408 -11.2219 -1.6445 17 6 5.8855 -11.0479 -2.2831 18 6 6.1894 -9.7379 -2.2045 19 6 7.4321 -9.0896 -2.7581 20 8 8.5857 -9.6759 -2.1521 21 14 7.3970 -7.2638 -2.3891 22 1 8.6211 -6.6247 -2.9351 23 1 6.1981 -6.6544 -3.0189 24 1 7.3432 -7.0567 -0.9196 25 8 5.2038 -9.1065 -1.5453 26 6 2.1049 -10.7198 -0.1685 27 6 0.9452 -10.4449 0.5236 28 6 0.6625 -9.1474 0.9265 29 8 -0.4827 -8.8816 1.6032 30 6 0.7027 -3.9988 1.8842 31 7 0.7966 -2.7098 2.0879 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 -0.3634 -1.0276 0.0005 35 1 3.5740 1.7564 -0.0005 36 1 2.1206 2.2703 -0.8900 37 1 2.1207 2.2703 0.8900 38 1 2.1206 -1.9058 -1.5212 39 1 2.1206 -0.3643 -2.4111 40 1 3.5739 -0.8778 -1.5214 41 1 2.1207 -0.3644 2.4111 42 1 3.5740 -0.8778 1.5213 43 1 3.5751 -3.3170 0.4572 44 1 2.9481 -5.9288 0.2975 45 1 3.4328 -7.5964 -0.2895 46 1 4.1006 -12.1498 -1.5278 47 1 6.4811 -11.8185 -2.7496 48 1 7.4714 -9.2415 -3.8367 49 1 9.4237 -9.3057 -2.4617 50 1 2.3170 -11.7310 -0.4827 51 1 0.2517 -11.2414 0.7493 52 1 -0.1135 -4.6312 2.2008 RHF calculation, no. of doubly occupied orbitals= 74 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_13259648.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:22:56 Heat of formation + Delta-G solvation = -91.332784 kcal Electronic energy + Delta-G solvation = -36235.609480 eV Core-core repulsion = 31403.558672 eV Total energy + Delta-G solvation = -4832.050808 eV No. of doubly occupied orbitals = 74 Molecular weight (most abundant/longest-lived isotopes) = 414.149 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -43.45681 -42.28518 -40.59902 -38.90312 -37.76386 -35.83271 -34.81898 -33.92096 -33.67729 -32.12174 -31.79496 -30.17546 -29.50784 -29.24420 -28.36219 -28.31136 -26.94367 -25.79735 -24.75381 -23.11941 -22.73975 -22.34265 -21.79866 -21.07708 -20.59023 -18.90023 -18.56392 -18.20390 -17.42608 -16.92001 -16.74664 -16.50651 -16.50164 -16.08656 -15.94468 -15.65955 -15.56229 -15.02184 -14.86065 -14.55436 -14.31771 -14.17923 -14.14799 -14.09067 -14.05354 -13.83897 -13.80438 -13.76803 -13.68641 -13.63181 -13.39676 -13.16927 -13.11997 -13.00229 -12.60075 -12.52277 -12.31766 -12.09884 -12.09314 -11.90238 -11.80803 -11.79175 -11.30319 -10.82740 -10.79423 -10.76273 -10.70655 -10.34637 -9.98450 -9.83713 -9.50802 -9.43961 -8.56007 -7.71423 0.20809 0.31317 0.78975 1.12226 1.30631 1.40047 1.41440 1.58567 1.61995 1.68157 1.87179 1.91010 1.99445 2.06904 2.11888 2.37101 2.40468 2.60308 3.41958 3.55679 3.75504 3.83627 3.89933 3.97606 4.00504 4.16519 4.26239 4.30549 4.44196 4.51100 4.63715 4.67484 4.68118 4.70966 4.72811 4.75400 4.76494 4.83893 4.84834 4.89583 4.91975 4.93231 5.04509 5.11221 5.20404 5.29308 5.44745 5.52704 5.61328 5.62343 5.68690 5.72930 5.85328 5.99203 6.08481 6.13686 6.28032 6.57437 6.78844 6.89416 7.47446 7.53953 Molecular weight = 414.15amu Principal moments of inertia in cm(-1) A = 0.006286 B = 0.002224 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4453.153646 B =12585.864869 C =16450.203335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.477 4.477 2 Si 1.088 2.912 3 C -0.438 4.438 4 C -0.463 4.463 5 C -0.195 4.195 6 N -0.335 5.335 7 C 0.026 3.974 8 C -0.018 4.018 9 N -0.641 5.641 10 C 0.558 3.442 11 O -0.557 6.557 12 C -0.314 4.314 13 C 0.000 4.000 14 C -0.170 4.170 15 C 0.066 3.934 16 C -0.230 4.230 17 C -0.164 4.164 18 C -0.053 4.053 19 C -0.032 4.032 20 O -0.558 6.558 21 Si 0.972 3.028 22 H -0.215 1.215 23 H -0.267 1.267 24 H -0.285 1.285 25 O -0.191 6.191 26 C -0.003 4.003 27 C -0.273 4.273 28 C 0.274 3.726 29 O -0.746 6.746 30 C 0.012 3.988 31 N -0.306 5.306 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.036 0.964 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.048 0.952 39 H 0.075 0.925 40 H 0.090 0.910 41 H 0.106 0.894 42 H 0.133 0.867 43 H 0.222 0.778 44 H 0.416 0.584 45 H 0.133 0.867 46 H 0.163 0.837 47 H 0.171 0.829 48 H 0.125 0.875 49 H 0.407 0.593 50 H 0.149 0.851 51 H 0.111 0.889 52 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.609 14.820 -13.227 30.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.580 4.580 2 Si 1.278 2.722 3 C -0.548 4.548 4 C -0.570 4.570 5 C -0.357 4.357 6 N -0.119 5.119 7 C -0.123 4.123 8 C -0.123 4.123 9 N -0.289 5.289 10 C 0.351 3.649 11 O -0.436 6.436 12 C -0.319 4.319 13 C -0.018 4.018 14 C -0.171 4.171 15 C 0.017 3.983 16 C -0.249 4.249 17 C -0.183 4.183 18 C -0.101 4.101 19 C -0.142 4.142 20 O -0.369 6.369 21 Si 0.794 3.206 22 H -0.137 1.137 23 H -0.192 1.192 24 H -0.211 1.211 25 O -0.089 6.089 26 C -0.021 4.021 27 C -0.293 4.293 28 C 0.199 3.801 29 O -0.667 6.667 30 C -0.172 4.172 31 N -0.131 5.131 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.055 0.945 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.068 0.932 39 H 0.094 0.906 40 H 0.109 0.891 41 H 0.124 0.876 42 H 0.152 0.848 43 H 0.239 0.761 44 H 0.254 0.746 45 H 0.150 0.850 46 H 0.181 0.819 47 H 0.188 0.812 48 H 0.142 0.858 49 H 0.259 0.741 50 H 0.167 0.833 51 H 0.129 0.871 52 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 20.537 16.985 -11.489 29.021 hybrid contribution -0.135 -1.929 -0.181 1.943 sum 20.402 15.055 -11.670 27.912 Atomic orbital electron populations 1.26529 1.24658 1.02652 1.04194 0.78413 0.64032 0.66778 0.63000 1.25936 1.07397 1.16056 1.05436 1.26285 1.07529 1.07331 1.15905 1.27563 1.06774 0.81238 1.20116 1.48294 1.14464 1.07657 1.41477 1.22352 1.00804 0.84901 1.04260 1.18054 0.98563 0.85944 1.09707 1.42657 1.24122 1.04060 1.58079 1.18443 0.82535 0.85263 0.78652 1.90615 1.27673 1.83534 1.41778 1.19912 1.01487 0.93188 1.17318 1.21127 0.92992 0.96196 0.91522 1.17130 0.94599 0.94083 1.11265 1.20428 0.89580 0.87906 1.00425 1.21945 0.98894 0.97821 1.06219 1.21650 0.96787 0.96046 1.03823 1.21940 0.92152 0.92936 1.03102 1.23776 0.81884 1.08920 0.99582 1.86439 1.16071 1.65600 1.68784 0.85396 0.81866 0.73496 0.79807 1.13662 1.19189 1.21055 1.83852 1.27483 1.38721 1.58888 1.20992 0.90426 0.98524 0.92165 1.21259 1.01175 0.96369 1.10495 1.19590 0.87674 0.90825 0.82047 1.93713 1.28682 1.90800 1.53499 1.24114 0.99835 0.92266 1.00985 1.77266 1.03389 1.11347 1.21135 0.91552 0.90828 0.94498 0.89223 0.90162 0.90436 0.93222 0.90554 0.89123 0.87554 0.84843 0.76147 0.74612 0.84981 0.81921 0.81174 0.85773 0.74116 0.83294 0.87057 0.81704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 -9.50 8.65 113.37 0.98 -8.51 16 2 Si 1.09 12.08 12.79 68.60 0.88 12.96 16 3 C -0.44 -2.81 8.65 113.37 0.98 -1.83 16 4 C -0.46 -6.05 8.65 113.37 0.98 -5.07 16 5 C -0.19 -2.92 5.59 127.77 0.71 -2.20 16 6 N -0.34 -8.98 3.01 -182.91 -0.55 -9.53 16 7 C 0.03 0.71 11.44 83.50 0.96 1.66 16 8 C -0.02 -0.71 6.90 37.63 0.26 -0.45 16 9 N -0.64 -26.51 5.42 -306.87 -1.66 -28.17 16 10 C 0.56 30.44 7.73 86.70 0.67 31.11 16 11 O -0.56 -35.84 12.29 16.93 0.21 -35.63 16 12 C -0.31 -17.15 5.88 -20.04 -0.12 -17.27 16 13 C 0.00 0.02 9.20 22.79 0.21 0.23 16 14 C -0.17 -7.02 5.87 -20.13 -0.12 -7.13 16 15 C 0.07 2.35 7.03 24.27 0.17 2.52 16 16 C -0.23 -6.88 10.26 22.41 0.23 -6.65 16 17 C -0.16 -4.26 10.77 22.13 0.24 -4.03 16 18 C -0.05 -1.40 6.25 24.88 0.16 -1.25 16 19 C -0.03 -0.53 2.98 71.24 0.21 -0.32 16 20 O -0.56 -8.52 12.84 -148.98 -1.91 -10.43 16 21 Si 0.97 16.18 27.38 68.60 1.88 18.06 16 22 H -0.21 -2.23 7.11 99.48 0.71 -1.53 16 23 H -0.27 -5.46 7.11 99.48 0.71 -4.75 16 24 H -0.29 -6.72 7.11 99.48 0.71 -6.01 16 25 O -0.19 -6.26 8.78 -6.51 -0.06 -6.32 16 26 C 0.00 -0.12 9.54 22.55 0.22 0.10 16 27 C -0.27 -14.24 9.96 22.30 0.22 -14.02 16 28 C 0.27 17.16 6.91 22.89 0.16 17.32 16 29 O -0.75 -56.65 16.86 -68.67 -1.16 -57.80 16 30 C 0.01 0.55 10.84 85.33 0.92 1.47 16 31 N -0.31 -11.45 12.56 -56.76 -0.71 -12.17 16 32 H 0.07 1.30 7.96 -2.39 -0.02 1.28 16 33 H 0.07 1.28 7.96 -2.39 -0.02 1.26 16 34 H 0.04 1.00 7.96 -2.39 -0.02 0.98 16 35 H 0.09 0.33 7.96 -2.39 -0.02 0.31 16 36 H 0.08 0.50 7.96 -2.38 -0.02 0.48 16 37 H 0.08 0.48 7.96 -2.39 -0.02 0.46 16 38 H 0.05 0.92 7.96 -2.39 -0.02 0.90 16 39 H 0.08 0.93 7.96 -2.39 -0.02 0.91 16 40 H 0.09 0.79 7.96 -2.39 -0.02 0.77 16 41 H 0.11 1.55 7.96 -2.39 -0.02 1.53 16 42 H 0.13 1.03 7.96 -2.39 -0.02 1.01 16 43 H 0.22 3.55 8.06 -2.91 -0.02 3.53 16 44 H 0.42 13.77 6.85 -92.71 -0.63 13.13 16 45 H 0.13 4.82 6.24 -2.91 -0.02 4.80 16 46 H 0.16 4.18 7.24 -2.91 -0.02 4.15 16 47 H 0.17 3.41 8.06 -2.91 -0.02 3.39 16 48 H 0.12 1.20 7.96 -2.39 -0.02 1.18 16 49 H 0.41 1.39 8.74 -74.06 -0.65 0.74 16 50 H 0.15 4.88 6.96 -2.91 -0.02 4.86 16 51 H 0.11 5.59 8.06 -2.91 -0.02 5.57 16 52 H 0.17 8.67 5.91 -2.91 -0.02 8.65 16 Total: -1.00 -101.17 448.04 5.41 -95.76 By element: Atomic # 1 Polarization: 47.13 SS G_CDS: 0.46 Total: 47.59 kcal Atomic # 6 Polarization: -22.36 SS G_CDS: 8.04 Total: -14.32 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: -2.93 Total: -49.87 kcal Atomic # 8 Polarization: -107.26 SS G_CDS: -2.92 Total: -110.18 kcal Atomic # 14 Polarization: 28.27 SS G_CDS: 2.76 Total: 31.02 kcal Total: -101.17 5.41 -95.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_13259648.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.425 kcal (2) G-P(sol) polarization free energy of solvation -101.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds