Wall clock time and date at job start Sun Mar 7 2021 10:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86298 * 109.46992 * 2 1 4 4 C 1.86299 * 109.47393 * 239.99949 * 2 1 3 5 5 C 1.86306 * 109.47186 * 119.99749 * 2 1 3 6 6 N 1.46498 * 109.46803 * 60.00188 * 5 2 1 7 7 C 1.35830 * 126.05611 * 89.99780 * 6 5 2 8 8 C 1.35765 * 107.56396 * 179.97438 * 7 6 5 9 9 N 1.40714 * 126.08365 * 180.02562 * 8 7 6 10 10 C 1.34779 * 120.00026 * 179.97438 * 9 8 7 11 11 O 1.21613 * 119.99795 * 0.02562 * 10 9 8 12 12 C 1.47634 * 120.00133 * 180.02562 * 10 9 8 13 13 C 1.40170 * 119.97375 * 359.97438 * 12 10 9 14 14 C 1.36356 * 120.66833 * 180.02562 * 13 12 10 15 15 C 1.39321 * 120.24044 * 359.95863 * 14 13 12 16 16 N 1.37407 * 133.25511 * 180.02562 * 15 14 13 17 17 C 1.36862 * 109.98085 * 180.02562 * 16 15 14 18 18 C 1.34186 * 109.96853 * 0.02562 * 17 16 15 19 19 C 1.50706 * 126.54443 * 179.97438 * 18 17 16 20 20 O 1.42895 * 109.46938 * 105.02342 * 19 18 17 21 21 Si 1.86299 * 109.46748 * 345.02506 * 19 18 17 22 22 H 1.48503 * 109.47188 * 60.00070 * 21 19 18 23 23 H 1.48506 * 109.47139 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47505 * 299.99883 * 21 19 18 25 25 C 1.40909 * 119.63890 * 0.29826 * 15 14 13 26 26 C 1.39189 * 119.97510 * 180.02562 * 12 10 9 27 27 C 1.40273 * 107.83427 * 0.26478 * 8 7 6 28 28 N 1.30835 * 108.33196 * 359.55289 * 27 8 7 29 29 H 1.08995 * 109.47118 * 300.00179 * 1 2 3 30 30 H 1.08993 * 109.46985 * 60.00284 * 1 2 3 31 31 H 1.09000 * 109.46542 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47032 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.46973 * 299.99762 * 3 2 1 34 34 H 1.08995 * 109.47335 * 59.99954 * 3 2 1 35 35 H 1.09002 * 109.47000 * 300.00255 * 4 2 1 36 36 H 1.09001 * 109.46924 * 59.99388 * 4 2 1 37 37 H 1.08996 * 109.47447 * 180.02562 * 4 2 1 38 38 H 1.08995 * 109.47151 * 300.00052 * 5 2 1 39 39 H 1.08996 * 109.47186 * 179.97438 * 5 2 1 40 40 H 1.07998 * 126.21613 * 0.02902 * 7 6 5 41 41 H 0.96991 * 119.99911 * 0.02562 * 9 8 7 42 42 H 1.07997 * 119.66633 * 0.02562 * 13 12 10 43 43 H 1.08004 * 119.87826 * 179.97438 * 14 13 12 44 44 H 0.97001 * 125.01625 * 359.97438 * 16 15 14 45 45 H 1.08007 * 125.01917 * 180.02562 * 17 16 15 46 46 H 1.09000 * 109.47161 * 225.02608 * 19 18 17 47 47 H 0.96698 * 114.00355 * 299.99977 * 20 19 18 48 48 H 1.08003 * 120.30457 * 0.02562 * 26 12 10 49 49 H 1.07992 * 125.83021 * 179.73725 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4841 -0.8782 1.5212 6 7 1.9957 -2.2594 1.5212 7 6 2.6258 -3.3301 0.9721 8 6 1.8454 -4.4198 1.1879 9 7 2.1294 -5.7365 0.7807 10 6 1.2637 -6.7304 1.0618 11 8 0.2368 -6.4893 1.6671 12 6 1.5620 -8.1119 0.6351 13 6 2.7454 -8.3891 -0.0630 14 6 3.0349 -9.6598 -0.4643 15 6 2.1542 -10.7021 -0.1833 16 7 2.1738 -12.0496 -0.4516 17 6 1.0466 -12.6426 0.0492 18 6 0.2720 -11.7238 0.6461 19 6 -1.0533 -11.9687 1.3205 20 8 -0.8822 -11.9217 2.7384 21 14 -1.7001 -13.6450 0.8282 22 1 -0.7319 -14.6911 1.2450 23 1 -3.0058 -13.8867 1.4932 24 1 -1.8779 -13.6939 -0.6453 25 6 0.9585 -10.4355 0.5130 26 6 0.6672 -9.1379 0.9253 27 6 0.7027 -3.9988 1.8842 28 7 0.7966 -2.7098 2.0879 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 3.5740 1.7565 -0.0005 33 1 2.1206 2.2703 -0.8900 34 1 2.1207 2.2703 0.8899 35 1 2.1207 -1.9059 -1.5211 36 1 2.1207 -0.3644 -2.4111 37 1 3.5741 -0.8786 -1.5209 38 1 2.1207 -0.3643 2.4111 39 1 3.5740 -0.8786 1.5210 40 1 3.5756 -3.3171 0.4581 41 1 2.9486 -5.9288 0.2983 42 1 3.4351 -7.5883 -0.2852 43 1 3.9503 -9.8589 -1.0018 44 1 2.8818 -12.5123 -0.9265 45 1 0.8146 -13.6949 -0.0252 46 1 -1.7640 -11.2009 1.0146 47 1 -0.2616 -12.5790 3.0817 48 1 -0.2464 -8.9287 1.4618 49 1 -0.1134 -4.6312 2.2009 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608520_13287722.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:23:14 Heat of formation + Delta-G solvation = 36.878275 kcal Electronic energy + Delta-G solvation = -30271.260155 eV Core-core repulsion = 26131.277870 eV Total energy + Delta-G solvation = -4139.982285 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 372.153 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.52251 -42.10304 -40.38662 -37.92649 -37.40639 -35.74008 -33.56011 -33.28095 -31.20301 -30.62707 -29.89966 -29.59039 -28.53471 -28.39478 -26.96122 -26.47350 -24.81159 -23.53667 -22.56350 -21.93596 -21.08532 -20.53744 -19.30228 -18.54213 -18.14187 -17.51038 -17.13585 -16.69921 -16.43958 -16.19381 -15.82346 -15.68675 -15.60961 -15.13971 -14.98041 -14.79831 -14.75885 -14.59384 -14.30977 -14.26797 -14.02888 -13.89324 -13.82118 -13.69612 -13.56759 -13.46889 -13.37332 -13.20280 -13.12081 -12.66360 -12.43466 -12.25209 -12.03660 -12.01018 -11.75659 -11.53906 -11.23421 -10.99567 -10.88670 -10.79296 -10.72899 -10.30768 -9.90958 -9.37300 -8.86119 -8.42022 -0.07565 0.16271 0.90164 1.16470 1.37870 1.38129 1.45391 1.53962 1.55287 1.72306 1.80697 1.91580 1.92963 1.96662 2.33057 2.34825 2.46433 3.00800 3.54954 3.58084 3.71789 3.74005 3.80831 3.83963 3.98023 4.06365 4.33358 4.38317 4.41531 4.51499 4.54371 4.57689 4.59991 4.62250 4.65374 4.67416 4.78567 4.81831 4.84141 4.84481 4.86852 5.02132 5.23196 5.29663 5.36466 5.39341 5.43962 5.51151 5.59856 5.62558 5.96326 6.05751 6.15151 6.33998 6.54972 6.67419 6.93668 7.34322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.446 4.446 2 Si 1.019 2.981 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.168 4.168 6 N -0.345 5.345 7 C 0.011 3.989 8 C -0.001 4.001 9 N -0.641 5.641 10 C 0.566 3.434 11 O -0.526 6.526 12 C -0.166 4.166 13 C -0.067 4.067 14 C -0.133 4.133 15 C 0.119 3.881 16 N -0.585 5.585 17 C 0.052 3.948 18 C -0.189 4.189 19 C -0.048 4.048 20 O -0.537 6.537 21 Si 0.948 3.052 22 H -0.253 1.253 23 H -0.249 1.249 24 H -0.250 1.250 25 C -0.101 4.101 26 C 0.012 3.988 27 C 0.048 3.952 28 N -0.282 5.282 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.175 0.825 41 H 0.408 0.592 42 H 0.128 0.872 43 H 0.128 0.872 44 H 0.421 0.579 45 H 0.173 0.827 46 H 0.116 0.884 47 H 0.374 0.626 48 H 0.142 0.858 49 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.563 -2.440 -4.857 8.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.554 4.554 2 Si 1.213 2.787 3 C -0.558 4.558 4 C -0.558 4.558 5 C -0.334 4.334 6 N -0.128 5.128 7 C -0.137 4.137 8 C -0.105 4.105 9 N -0.286 5.286 10 C 0.356 3.644 11 O -0.403 6.403 12 C -0.170 4.170 13 C -0.087 4.087 14 C -0.154 4.154 15 C 0.010 3.990 16 N -0.187 5.187 17 C -0.075 4.075 18 C -0.196 4.196 19 C -0.160 4.160 20 O -0.342 6.342 21 Si 0.770 3.230 22 H -0.177 1.177 23 H -0.172 1.172 24 H -0.174 1.174 25 C -0.105 4.105 26 C -0.007 4.007 27 C -0.139 4.139 28 N -0.105 5.105 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.123 0.877 39 H 0.116 0.884 40 H 0.192 0.808 41 H 0.244 0.756 42 H 0.146 0.854 43 H 0.146 0.854 44 H 0.259 0.741 45 H 0.190 0.810 46 H 0.134 0.866 47 H 0.220 0.780 48 H 0.160 0.840 49 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 4.672 -1.591 -4.228 6.498 hybrid contribution 2.082 -1.166 -0.718 2.492 sum 6.753 -2.757 -4.946 8.813 Atomic orbital electron populations 1.26067 1.20056 1.04956 1.04367 0.79381 0.68131 0.66322 0.64854 1.26098 1.06350 1.18288 1.05058 1.26125 1.06085 1.08344 1.15201 1.26932 1.04359 0.83348 1.18730 1.47956 1.15743 1.06305 1.42822 1.21841 1.00241 0.86557 1.05069 1.17655 0.98458 0.84724 1.09676 1.42649 1.24019 1.04646 1.57286 1.18134 0.82886 0.84410 0.78989 1.90686 1.25814 1.83329 1.40430 1.19394 0.97863 0.92723 1.07055 1.20579 0.95562 0.96114 0.96412 1.19648 0.99741 0.90793 1.05217 1.18448 0.96736 0.84298 0.99470 1.41721 1.20480 1.06217 1.50267 1.21720 0.87590 0.98444 0.99717 1.20759 0.99406 0.91775 1.07671 1.24339 0.95576 1.12561 0.83478 1.86555 1.67492 1.61272 1.18843 0.85782 0.81242 0.75129 0.80884 1.17718 1.17243 1.17361 1.18888 0.95083 0.93310 1.03258 1.20709 0.97954 0.89139 0.92945 1.24505 0.98976 0.91715 0.98677 1.77453 1.01200 1.12324 1.19551 0.91041 0.91271 0.90940 0.91001 0.90609 0.90867 0.91067 0.90786 0.91157 0.87749 0.88395 0.80794 0.75617 0.85415 0.85426 0.74139 0.81012 0.86568 0.77964 0.84005 0.77820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 -0.13 8.65 101.05 0.87 0.75 16 2 Si 1.02 -2.67 12.79 -169.99 -2.17 -4.85 16 3 C -0.45 1.15 8.65 101.05 0.87 2.02 16 4 C -0.45 0.87 8.65 101.05 0.87 1.74 16 5 C -0.17 0.23 5.59 59.85 0.33 0.56 16 6 N -0.35 -0.63 3.01 -9.17 -0.03 -0.65 16 7 C 0.01 0.01 11.44 -16.67 -0.19 -0.18 16 8 C 0.00 0.00 6.90 -83.90 -0.58 -0.58 16 9 N -0.64 -0.71 5.42 -10.94 -0.06 -0.77 16 10 C 0.57 1.95 7.74 -12.42 -0.10 1.85 16 11 O -0.53 -3.49 13.48 5.27 0.07 -3.42 16 12 C -0.17 -0.32 5.87 -104.98 -0.62 -0.94 16 13 C -0.07 0.05 9.46 -39.53 -0.37 -0.32 16 14 C -0.13 0.13 10.00 -39.86 -0.40 -0.27 16 15 C 0.12 0.04 7.27 -83.95 -0.61 -0.57 16 16 N -0.58 1.09 6.05 -10.61 -0.06 1.03 16 17 C 0.05 -0.08 10.43 -16.73 -0.17 -0.25 16 18 C -0.19 -0.09 5.58 -102.68 -0.57 -0.66 16 19 C -0.05 0.00 3.06 36.01 0.11 0.11 16 20 O -0.54 -0.55 12.88 -35.23 -0.45 -1.01 16 21 Si 0.95 -1.18 26.08 -169.99 -4.43 -5.61 16 22 H -0.25 0.48 7.03 56.52 0.40 0.87 16 23 H -0.25 -0.15 7.11 56.52 0.40 0.26 16 24 H -0.25 0.16 7.11 56.52 0.40 0.56 16 25 C -0.10 -0.20 6.34 -105.15 -0.67 -0.87 16 26 C 0.01 0.03 9.64 -38.86 -0.37 -0.34 16 27 C 0.05 0.25 10.84 -17.21 -0.19 0.06 16 28 N -0.28 -1.41 12.56 30.71 0.39 -1.02 16 29 H 0.07 0.04 7.96 -51.93 -0.41 -0.38 16 30 H 0.07 -0.01 7.96 -51.93 -0.41 -0.42 16 31 H 0.07 0.17 7.96 -51.93 -0.41 -0.25 16 32 H 0.07 -0.22 7.96 -51.93 -0.41 -0.63 16 33 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 34 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 35 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 36 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 37 H 0.07 -0.20 7.96 -51.93 -0.41 -0.61 16 38 H 0.10 -0.13 7.96 -51.93 -0.41 -0.54 16 39 H 0.10 -0.35 7.96 -51.93 -0.41 -0.76 16 40 H 0.17 -0.54 8.06 -52.49 -0.42 -0.96 16 41 H 0.41 -0.99 6.83 -40.82 -0.28 -1.27 16 42 H 0.13 -0.49 6.36 -52.49 -0.33 -0.83 16 43 H 0.13 -0.43 8.06 -52.48 -0.42 -0.86 16 44 H 0.42 -2.06 8.96 -40.82 -0.37 -2.43 16 45 H 0.17 -0.71 6.30 -52.48 -0.33 -1.04 16 46 H 0.12 -0.01 7.96 -51.93 -0.41 -0.42 16 47 H 0.37 -0.92 8.70 45.56 0.40 -0.52 16 48 H 0.14 0.52 7.64 -52.48 -0.40 0.12 16 49 H 0.21 1.25 5.91 -52.49 -0.31 0.94 16 LS Contribution 412.02 15.07 6.21 6.21 Total: 0.00 -10.81 412.02 -8.55 -19.36 By element: Atomic # 1 Polarization: -5.14 SS G_CDS: -6.23 Total: -11.37 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: -1.77 Total: 2.11 kcal Atomic # 7 Polarization: -1.66 SS G_CDS: 0.23 Total: -1.42 kcal Atomic # 8 Polarization: -4.05 SS G_CDS: -0.38 Total: -4.43 kcal Atomic # 14 Polarization: -3.85 SS G_CDS: -6.61 Total: -10.46 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -10.81 -8.55 -19.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_13287722.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.240 kcal (2) G-P(sol) polarization free energy of solvation -10.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds