Wall clock time and date at job start Sun Mar 7 2021 10:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86298 * 109.46992 * 2 1 4 4 C 1.86299 * 109.47393 * 239.99949 * 2 1 3 5 5 C 1.86306 * 109.47186 * 119.99749 * 2 1 3 6 6 N 1.46498 * 109.46803 * 60.00188 * 5 2 1 7 7 C 1.35830 * 126.05611 * 89.99780 * 6 5 2 8 8 C 1.35765 * 107.56396 * 179.97438 * 7 6 5 9 9 N 1.40714 * 126.08365 * 180.02562 * 8 7 6 10 10 C 1.34779 * 120.00026 * 179.97438 * 9 8 7 11 11 O 1.21613 * 119.99795 * 0.02562 * 10 9 8 12 12 C 1.47634 * 120.00133 * 180.02562 * 10 9 8 13 13 C 1.40170 * 119.97375 * 359.97438 * 12 10 9 14 14 C 1.36356 * 120.66833 * 180.02562 * 13 12 10 15 15 C 1.39321 * 120.24044 * 359.95863 * 14 13 12 16 16 N 1.37407 * 133.25511 * 180.02562 * 15 14 13 17 17 C 1.36862 * 109.98085 * 180.02562 * 16 15 14 18 18 C 1.34186 * 109.96853 * 0.02562 * 17 16 15 19 19 C 1.50706 * 126.54443 * 179.97438 * 18 17 16 20 20 O 1.42895 * 109.46938 * 105.02342 * 19 18 17 21 21 Si 1.86299 * 109.46748 * 345.02506 * 19 18 17 22 22 H 1.48503 * 109.47188 * 60.00070 * 21 19 18 23 23 H 1.48506 * 109.47139 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47505 * 299.99883 * 21 19 18 25 25 C 1.40909 * 119.63890 * 0.29826 * 15 14 13 26 26 C 1.39189 * 119.97510 * 180.02562 * 12 10 9 27 27 C 1.40273 * 107.83427 * 0.26478 * 8 7 6 28 28 N 1.30835 * 108.33196 * 359.55289 * 27 8 7 29 29 H 1.08995 * 109.47118 * 300.00179 * 1 2 3 30 30 H 1.08993 * 109.46985 * 60.00284 * 1 2 3 31 31 H 1.09000 * 109.46542 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47032 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.46973 * 299.99762 * 3 2 1 34 34 H 1.08995 * 109.47335 * 59.99954 * 3 2 1 35 35 H 1.09002 * 109.47000 * 300.00255 * 4 2 1 36 36 H 1.09001 * 109.46924 * 59.99388 * 4 2 1 37 37 H 1.08996 * 109.47447 * 180.02562 * 4 2 1 38 38 H 1.08995 * 109.47151 * 300.00052 * 5 2 1 39 39 H 1.08996 * 109.47186 * 179.97438 * 5 2 1 40 40 H 1.07998 * 126.21613 * 0.02902 * 7 6 5 41 41 H 0.96991 * 119.99911 * 0.02562 * 9 8 7 42 42 H 1.07997 * 119.66633 * 0.02562 * 13 12 10 43 43 H 1.08004 * 119.87826 * 179.97438 * 14 13 12 44 44 H 0.97001 * 125.01625 * 359.97438 * 16 15 14 45 45 H 1.08007 * 125.01917 * 180.02562 * 17 16 15 46 46 H 1.09000 * 109.47161 * 225.02608 * 19 18 17 47 47 H 0.96698 * 114.00355 * 299.99977 * 20 19 18 48 48 H 1.08003 * 120.30457 * 0.02562 * 26 12 10 49 49 H 1.07992 * 125.83021 * 179.73725 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4841 -0.8782 1.5212 6 7 1.9957 -2.2594 1.5212 7 6 2.6258 -3.3301 0.9721 8 6 1.8454 -4.4198 1.1879 9 7 2.1294 -5.7365 0.7807 10 6 1.2637 -6.7304 1.0618 11 8 0.2368 -6.4893 1.6671 12 6 1.5620 -8.1119 0.6351 13 6 2.7454 -8.3891 -0.0630 14 6 3.0349 -9.6598 -0.4643 15 6 2.1542 -10.7021 -0.1833 16 7 2.1738 -12.0496 -0.4516 17 6 1.0466 -12.6426 0.0492 18 6 0.2720 -11.7238 0.6461 19 6 -1.0533 -11.9687 1.3205 20 8 -0.8822 -11.9217 2.7384 21 14 -1.7001 -13.6450 0.8282 22 1 -0.7319 -14.6911 1.2450 23 1 -3.0058 -13.8867 1.4932 24 1 -1.8779 -13.6939 -0.6453 25 6 0.9585 -10.4355 0.5130 26 6 0.6672 -9.1379 0.9253 27 6 0.7027 -3.9988 1.8842 28 7 0.7966 -2.7098 2.0879 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 3.5740 1.7565 -0.0005 33 1 2.1206 2.2703 -0.8900 34 1 2.1207 2.2703 0.8899 35 1 2.1207 -1.9059 -1.5211 36 1 2.1207 -0.3644 -2.4111 37 1 3.5741 -0.8786 -1.5209 38 1 2.1207 -0.3643 2.4111 39 1 3.5740 -0.8786 1.5210 40 1 3.5756 -3.3171 0.4581 41 1 2.9486 -5.9288 0.2983 42 1 3.4351 -7.5883 -0.2852 43 1 3.9503 -9.8589 -1.0018 44 1 2.8818 -12.5123 -0.9265 45 1 0.8146 -13.6949 -0.0252 46 1 -1.7640 -11.2009 1.0146 47 1 -0.2616 -12.5790 3.0817 48 1 -0.2464 -8.9287 1.4618 49 1 -0.1134 -4.6312 2.2009 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_13287722.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:23:13 Heat of formation + Delta-G solvation = 37.665751 kcal Electronic energy + Delta-G solvation = -30271.226008 eV Core-core repulsion = 26131.277870 eV Total energy + Delta-G solvation = -4139.948138 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 372.153 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.51420 -42.23857 -40.57877 -37.95073 -37.42162 -35.95279 -33.68418 -33.25688 -31.28972 -30.61850 -29.93231 -29.47601 -28.36996 -28.31756 -27.00183 -26.44513 -24.91559 -23.50032 -22.72609 -22.02617 -21.16610 -20.60230 -19.27545 -18.65084 -18.17840 -17.55118 -17.08300 -16.82075 -16.58303 -16.19123 -15.83051 -15.78865 -15.69285 -15.13271 -15.08532 -14.88819 -14.75943 -14.53377 -14.18237 -14.14457 -14.00660 -13.82210 -13.80940 -13.71418 -13.61786 -13.40084 -13.19894 -13.12746 -13.01086 -12.65581 -12.40483 -12.23890 -12.14216 -11.95901 -11.74599 -11.70956 -11.35355 -11.00837 -10.83758 -10.79252 -10.78324 -10.28755 -10.01097 -9.37515 -8.82989 -8.55376 -0.16825 0.20665 0.82003 1.22852 1.38224 1.46816 1.51328 1.53883 1.62509 1.68577 1.88677 1.98574 2.03060 2.11497 2.17360 2.24948 2.59039 2.92836 3.61622 3.65163 3.71659 3.78788 3.87655 3.91686 4.01273 4.15089 4.29711 4.39860 4.46726 4.53088 4.61635 4.65958 4.69963 4.71649 4.74340 4.76092 4.84420 4.84642 4.85631 4.88588 4.90061 5.03275 5.12271 5.28309 5.36954 5.49591 5.52017 5.59625 5.61730 5.67002 5.79503 5.99472 6.10791 6.47747 6.58276 6.71855 6.82602 7.19656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.477 4.477 2 Si 1.095 2.905 3 C -0.454 4.454 4 C -0.458 4.458 5 C -0.190 4.190 6 N -0.340 5.340 7 C 0.034 3.966 8 C -0.024 4.024 9 N -0.622 5.622 10 C 0.558 3.442 11 O -0.572 6.572 12 C -0.174 4.174 13 C -0.066 4.066 14 C -0.125 4.125 15 C 0.112 3.888 16 N -0.572 5.572 17 C 0.069 3.931 18 C -0.218 4.218 19 C -0.060 4.060 20 O -0.561 6.561 21 Si 0.997 3.003 22 H -0.230 1.230 23 H -0.281 1.281 24 H -0.255 1.255 25 C -0.126 4.126 26 C -0.017 4.017 27 C 0.020 3.980 28 N -0.318 5.318 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.044 0.956 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.134 0.866 40 H 0.224 0.776 41 H 0.426 0.574 42 H 0.164 0.836 43 H 0.163 0.837 44 H 0.438 0.562 45 H 0.204 0.796 46 H 0.099 0.901 47 H 0.387 0.613 48 H 0.112 0.888 49 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.983 -2.951 -6.908 13.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.581 4.581 2 Si 1.284 2.716 3 C -0.562 4.562 4 C -0.566 4.566 5 C -0.353 4.353 6 N -0.122 5.122 7 C -0.115 4.115 8 C -0.128 4.128 9 N -0.269 5.269 10 C 0.349 3.651 11 O -0.453 6.453 12 C -0.178 4.178 13 C -0.085 4.085 14 C -0.145 4.145 15 C 0.002 3.998 16 N -0.176 5.176 17 C -0.059 4.059 18 C -0.225 4.225 19 C -0.169 4.169 20 O -0.368 6.368 21 Si 0.818 3.182 22 H -0.153 1.153 23 H -0.206 1.206 24 H -0.178 1.178 25 C -0.131 4.131 26 C -0.037 4.037 27 C -0.165 4.165 28 N -0.143 5.143 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.109 0.891 38 H 0.120 0.880 39 H 0.152 0.848 40 H 0.240 0.760 41 H 0.266 0.734 42 H 0.181 0.819 43 H 0.180 0.820 44 H 0.279 0.721 45 H 0.221 0.779 46 H 0.117 0.883 47 H 0.236 0.764 48 H 0.130 0.870 49 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 9.125 -2.106 -6.292 11.282 hybrid contribution 0.668 -0.909 -0.075 1.131 sum 9.793 -3.015 -6.367 12.063 Atomic orbital electron populations 1.26533 1.24623 1.02965 1.03936 0.78263 0.63871 0.65936 0.63538 1.26126 1.07360 1.17739 1.05014 1.26212 1.07504 1.07639 1.15220 1.27415 1.06693 0.81716 1.19519 1.48293 1.14661 1.07717 1.41544 1.22544 1.00823 0.85003 1.03165 1.17814 0.98399 0.85992 1.10641 1.42448 1.24167 1.03636 1.56634 1.18515 0.82603 0.85462 0.78555 1.90671 1.27875 1.84060 1.42645 1.19398 0.99061 0.91386 1.07954 1.20907 0.94718 0.97546 0.95363 1.20055 1.00307 0.90008 1.04138 1.18671 0.96313 0.85580 0.99254 1.41744 1.20735 1.05435 1.49650 1.22132 0.86769 0.99308 0.97646 1.20889 1.00188 0.91940 1.09509 1.24580 0.95630 1.13828 0.82906 1.86510 1.68133 1.62324 1.19857 0.85102 0.79658 0.73729 0.79731 1.15281 1.20647 1.17839 1.19146 0.96598 0.93335 1.04033 1.20612 0.97822 0.90639 0.94594 1.24290 0.99840 0.92064 1.00310 1.77377 1.03362 1.12319 1.21223 0.91950 0.91249 0.93646 0.89521 0.90706 0.90962 0.92130 0.90976 0.89135 0.87976 0.84833 0.75974 0.73360 0.81892 0.81975 0.72077 0.77944 0.88293 0.76437 0.87005 0.80347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 -1.24 8.65 113.37 0.98 -0.25 16 2 Si 1.09 -6.74 12.79 68.60 0.88 -5.86 16 3 C -0.45 3.16 8.65 113.37 0.98 4.14 16 4 C -0.46 2.64 8.65 113.37 0.98 3.62 16 5 C -0.19 0.78 5.59 127.77 0.71 1.50 16 6 N -0.34 -1.21 3.01 -182.92 -0.55 -1.76 16 7 C 0.03 0.01 11.44 83.50 0.96 0.96 16 8 C -0.02 -0.16 6.90 37.63 0.26 0.10 16 9 N -0.62 -1.87 5.42 -306.78 -1.66 -3.54 16 10 C 0.56 5.50 7.74 86.72 0.67 6.17 16 11 O -0.57 -10.64 13.48 -4.07 -0.05 -10.69 16 12 C -0.17 -1.04 5.87 -20.10 -0.12 -1.16 16 13 C -0.07 0.15 9.46 22.30 0.21 0.36 16 14 C -0.12 0.46 10.00 22.09 0.22 0.69 16 15 C 0.11 0.01 7.27 39.18 0.28 0.30 16 16 N -0.57 3.11 6.05 -187.48 -1.13 1.98 16 17 C 0.07 -0.28 10.43 82.98 0.87 0.58 16 18 C -0.22 -0.49 5.58 -18.61 -0.10 -0.59 16 19 C -0.06 -0.14 3.06 71.24 0.22 0.08 16 20 O -0.56 -2.73 12.88 -148.98 -1.92 -4.65 16 21 Si 1.00 -2.18 26.08 68.60 1.79 -0.39 16 22 H -0.23 1.37 7.03 99.48 0.70 2.07 16 23 H -0.28 -0.82 7.11 99.48 0.71 -0.11 16 24 H -0.25 0.41 7.11 99.48 0.71 1.12 16 25 C -0.13 -0.75 6.34 -20.21 -0.13 -0.88 16 26 C -0.02 -0.16 9.64 22.74 0.22 0.06 16 27 C 0.02 0.28 10.84 85.34 0.92 1.20 16 28 N -0.32 -4.02 12.56 -56.76 -0.71 -4.74 16 29 H 0.06 0.23 7.96 -2.39 -0.02 0.21 16 30 H 0.07 0.11 7.96 -2.39 -0.02 0.09 16 31 H 0.04 0.36 7.96 -2.39 -0.02 0.34 16 32 H 0.09 -0.80 7.96 -2.38 -0.02 -0.82 16 33 H 0.07 -0.45 7.96 -2.39 -0.02 -0.47 16 34 H 0.07 -0.45 7.96 -2.39 -0.02 -0.47 16 35 H 0.06 -0.18 7.96 -2.39 -0.02 -0.20 16 36 H 0.07 -0.35 7.96 -2.39 -0.02 -0.36 16 37 H 0.09 -0.85 7.96 -2.39 -0.02 -0.87 16 38 H 0.10 -0.31 7.96 -2.39 -0.02 -0.32 16 39 H 0.13 -1.46 7.96 -2.39 -0.02 -1.48 16 40 H 0.22 -2.33 8.06 -2.91 -0.02 -2.36 16 41 H 0.43 -2.61 6.83 -92.71 -0.63 -3.24 16 42 H 0.16 -1.70 6.36 -2.91 -0.02 -1.72 16 43 H 0.16 -1.74 8.06 -2.91 -0.02 -1.76 16 44 H 0.44 -5.49 8.96 -92.71 -0.83 -6.32 16 45 H 0.20 -2.22 6.30 -2.91 -0.02 -2.24 16 46 H 0.10 0.43 7.96 -2.39 -0.02 0.41 16 47 H 0.39 -1.20 8.70 -74.06 -0.64 -1.85 16 48 H 0.11 1.58 7.64 -2.91 -0.02 1.56 16 49 H 0.18 3.29 5.91 -2.91 -0.02 3.27 16 Total: 0.00 -32.73 412.02 4.42 -28.31 By element: Atomic # 1 Polarization: -15.17 SS G_CDS: -0.35 Total: -15.52 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: 8.14 Total: 16.86 kcal Atomic # 7 Polarization: -4.00 SS G_CDS: -4.06 Total: -8.06 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -1.97 Total: -15.34 kcal Atomic # 14 Polarization: -8.92 SS G_CDS: 2.67 Total: -6.25 kcal Total: -32.73 4.42 -28.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_13287722.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.972 kcal (2) G-P(sol) polarization free energy of solvation -32.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds