Wall clock time and date at job start Sun Mar 7 2021 10:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86303 * 109.47293 * 2 1 4 4 C 1.86300 * 109.47091 * 240.00078 * 2 1 3 5 5 C 1.86310 * 109.47149 * 120.00317 * 2 1 3 6 6 N 1.46495 * 109.47306 * 59.99952 * 5 2 1 7 7 C 1.35816 * 126.04995 * 270.29123 * 6 5 2 8 8 C 1.35787 * 107.55565 * 180.19624 * 7 6 5 9 9 N 1.40673 * 126.07865 * 179.84030 * 8 7 6 10 10 C 1.34784 * 119.99562 * 179.71531 * 9 8 7 11 11 O 1.21547 * 119.99723 * 359.72645 * 10 9 8 12 12 C 1.48135 * 119.99643 * 179.97438 * 10 9 8 13 13 C 1.39286 * 119.72119 * 180.02562 * 12 10 9 14 14 C 1.38614 * 119.06058 * 179.97438 * 13 12 10 15 15 C 1.38594 * 118.49215 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.32251 * 180.02562 * 15 14 13 17 17 O 1.42901 * 109.47429 * 65.00371 * 16 15 14 18 18 Si 1.86307 * 109.46742 * 184.99989 * 16 15 14 19 19 H 1.48502 * 109.47083 * 60.00382 * 18 16 15 20 20 H 1.48504 * 109.46832 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47379 * 299.99752 * 18 16 15 22 22 C 1.38590 * 119.35127 * 0.02562 * 15 14 13 23 23 N 1.31503 * 120.90272 * 359.74173 * 22 15 14 24 24 C 1.40268 * 107.83201 * 359.57761 * 8 7 6 25 25 N 1.30830 * 108.33522 * 0.26257 * 24 8 7 26 26 H 1.09003 * 109.47113 * 299.99438 * 1 2 3 27 27 H 1.08998 * 109.47610 * 59.99952 * 1 2 3 28 28 H 1.09010 * 109.47293 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.46908 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.46832 * 300.00524 * 3 2 1 31 31 H 1.09003 * 109.46583 * 60.00237 * 3 2 1 32 32 H 1.09006 * 109.47368 * 299.99834 * 4 2 1 33 33 H 1.08999 * 109.47236 * 59.99984 * 4 2 1 34 34 H 1.09003 * 109.47238 * 180.02562 * 4 2 1 35 35 H 1.08999 * 109.46622 * 299.99544 * 5 2 1 36 36 H 1.08998 * 109.46724 * 180.02562 * 5 2 1 37 37 H 1.07996 * 126.22163 * 0.07063 * 7 6 5 38 38 H 0.96999 * 120.00394 * 359.71298 * 9 8 7 39 39 H 1.08007 * 120.46790 * 359.95049 * 13 12 10 40 40 H 1.07998 * 120.75555 * 180.02562 * 14 13 12 41 41 H 1.09000 * 109.47417 * 304.99716 * 16 15 14 42 42 H 0.96694 * 113.99875 * 59.99560 * 17 16 15 43 43 H 1.07999 * 119.54830 * 179.97438 * 22 15 14 44 44 H 1.08002 * 125.83072 * 180.22831 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4839 -0.8782 -1.5211 5 6 2.4840 -0.8784 1.5212 6 7 1.9957 -2.2595 1.5211 7 6 0.8301 -2.6952 2.0653 8 6 0.7556 -4.0347 1.8557 9 7 -0.2920 -4.8801 2.2639 10 6 -0.2423 -6.1978 1.9846 11 8 0.7053 -6.6546 1.3757 12 6 -1.3452 -7.0882 2.4149 13 6 -1.2877 -8.4490 2.1237 14 6 -2.3269 -9.2697 2.5333 15 6 -3.3874 -8.7005 3.2206 16 6 -4.5387 -9.5544 3.6856 17 8 -4.0757 -10.4858 4.6655 18 14 -5.8546 -8.4684 4.4340 19 1 -6.3358 -7.5006 3.4157 20 1 -6.9894 -9.3099 4.8918 21 1 -5.2877 -7.7294 5.5906 22 6 -3.3786 -7.3384 3.4759 23 7 -2.3774 -6.5834 3.0797 24 6 1.9063 -4.4243 1.1544 25 7 2.6458 -3.3636 0.9553 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 3.5740 1.7564 0.0005 30 1 2.1206 2.2703 -0.8899 31 1 2.1207 2.2702 0.8901 32 1 2.1206 -1.9059 -1.5212 33 1 2.1206 -0.3644 -2.4111 34 1 3.5740 -0.8786 -1.5209 35 1 2.1207 -0.3645 2.4111 36 1 3.5740 -0.8779 1.5213 37 1 0.0968 -2.0872 2.5742 38 1 -1.0501 -4.5149 2.7464 39 1 -0.4454 -8.8589 1.5860 40 1 -2.3103 -10.3288 2.3225 41 1 -4.9549 -10.0969 2.8367 42 1 -3.6918 -10.0722 5.4507 43 1 -4.2035 -6.8914 4.0108 44 1 2.1418 -5.4285 0.8341 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608520_13287726.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:23:26 Heat of formation + Delta-G solvation = 15.715246 kcal Electronic energy + Delta-G solvation = -25497.859397 eV Core-core repulsion = 21768.949314 eV Total energy + Delta-G solvation = -3728.910083 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.137 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.32177 -41.70003 -40.03966 -38.00136 -35.89220 -34.01502 -33.49441 -32.98980 -30.42290 -29.67759 -28.57320 -28.43549 -28.05932 -26.73679 -25.11860 -24.15030 -22.71627 -22.08435 -21.14134 -19.12557 -18.71218 -18.33702 -17.62055 -16.85712 -16.68555 -16.50210 -16.38934 -16.22624 -15.91888 -15.25400 -15.02287 -14.97594 -14.57593 -14.37766 -14.29644 -14.29335 -14.02537 -13.90785 -13.77005 -13.64548 -13.53179 -13.39866 -13.23623 -13.14893 -12.69497 -12.34086 -12.16134 -12.13954 -11.62398 -11.31848 -11.24095 -11.10256 -11.02256 -10.91640 -10.67456 -10.66708 -10.33601 -9.97901 -8.53380 -0.63231 0.01946 0.80204 0.93665 1.26959 1.30013 1.34695 1.44091 1.58092 1.69913 1.76446 1.85290 2.13085 2.15354 2.43065 2.71954 2.90752 3.22726 3.39711 3.58751 3.68895 3.71969 3.88161 3.92690 4.09421 4.31324 4.33109 4.49540 4.50502 4.57906 4.59824 4.62981 4.64667 4.65840 4.77046 4.78504 4.81842 4.85423 4.93122 5.20305 5.31786 5.34415 5.42041 5.58860 5.94878 6.05918 6.29960 6.33356 6.56361 6.84603 7.13392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.019 2.981 3 C -0.449 4.449 4 C -0.446 4.446 5 C -0.169 4.169 6 N -0.343 5.343 7 C 0.019 3.981 8 C -0.007 4.007 9 N -0.621 5.621 10 C 0.573 3.427 11 O -0.518 6.518 12 C 0.084 3.916 13 C -0.105 4.105 14 C -0.049 4.049 15 C -0.150 4.150 16 C -0.080 4.080 17 O -0.534 6.534 18 Si 0.943 3.057 19 H -0.245 1.245 20 H -0.247 1.247 21 H -0.247 1.247 22 C 0.096 3.904 23 N -0.455 5.455 24 C 0.047 3.953 25 N -0.281 5.281 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.177 0.823 38 H 0.420 0.580 39 H 0.155 0.845 40 H 0.151 0.849 41 H 0.125 0.875 42 H 0.379 0.621 43 H 0.159 0.841 44 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.132 2.684 2.162 5.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.558 4.558 2 Si 1.213 2.787 3 C -0.558 4.558 4 C -0.554 4.554 5 C -0.335 4.335 6 N -0.126 5.126 7 C -0.130 4.130 8 C -0.112 4.112 9 N -0.266 5.266 10 C 0.359 3.641 11 O -0.393 6.393 12 C -0.055 4.055 13 C -0.126 4.126 14 C -0.075 4.075 15 C -0.152 4.152 16 C -0.191 4.191 17 O -0.339 6.339 18 Si 0.764 3.236 19 H -0.169 1.169 20 H -0.170 1.170 21 H -0.170 1.170 22 C -0.063 4.063 23 N -0.166 5.166 24 C -0.139 4.139 25 N -0.104 5.104 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.117 0.883 36 H 0.123 0.877 37 H 0.194 0.806 38 H 0.257 0.743 39 H 0.173 0.827 40 H 0.168 0.832 41 H 0.143 0.857 42 H 0.226 0.774 43 H 0.176 0.824 44 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -3.145 3.913 1.381 5.206 hybrid contribution -0.648 -0.897 0.790 1.359 sum -3.792 3.016 2.171 5.310 Atomic orbital electron populations 1.26132 1.20207 1.04717 1.04750 0.79383 0.67549 0.66140 0.65604 1.26094 1.06612 1.18135 1.04946 1.26069 1.06475 1.08308 1.14581 1.26956 1.06715 0.82052 1.17755 1.47981 1.14686 1.06989 1.42929 1.21895 0.92780 0.93961 1.04337 1.17662 0.93757 0.89604 1.10166 1.42527 1.21794 1.06485 1.55768 1.17771 0.85298 0.81410 0.79597 1.90707 1.33340 1.75089 1.40153 1.20986 0.93681 0.92611 0.98172 1.22234 0.99649 0.92796 0.97875 1.21570 0.91455 1.01151 0.93340 1.21631 0.98382 0.95652 0.99566 1.24981 0.99666 0.98044 0.96390 1.86557 1.82288 1.33909 1.31141 0.85760 0.78456 0.78364 0.80992 1.16855 1.17028 1.17023 1.22650 0.96252 0.90123 0.97317 1.67502 1.00608 1.39666 1.08789 1.24472 0.91459 0.99299 0.98649 1.77456 1.20581 0.92235 1.20148 0.91107 0.90749 0.91087 0.90862 0.90579 0.90978 0.90980 0.91231 0.91027 0.88268 0.87656 0.80574 0.74300 0.82725 0.83174 0.85727 0.77411 0.82421 0.77867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.90 8.65 101.05 0.87 1.77 16 2 Si 1.02 -2.88 12.78 -169.99 -2.17 -5.05 16 3 C -0.45 1.22 8.65 101.05 0.87 2.09 16 4 C -0.45 0.01 8.65 101.05 0.87 0.88 16 5 C -0.17 0.28 5.59 59.84 0.33 0.61 16 6 N -0.34 -0.52 3.02 -9.17 -0.03 -0.55 16 7 C 0.02 0.01 11.43 -16.67 -0.19 -0.18 16 8 C -0.01 -0.02 6.90 -83.91 -0.58 -0.60 16 9 N -0.62 -0.99 5.46 -10.81 -0.06 -1.05 16 10 C 0.57 1.73 7.78 -12.19 -0.09 1.63 16 11 O -0.52 -2.70 13.47 5.32 0.07 -2.63 16 12 C 0.08 0.13 6.75 -83.02 -0.56 -0.43 16 13 C -0.10 -0.04 9.63 -39.05 -0.38 -0.41 16 14 C -0.05 0.05 9.83 -39.31 -0.39 -0.33 16 15 C -0.15 0.21 5.37 -104.36 -0.56 -0.35 16 16 C -0.08 0.21 2.82 36.00 0.10 0.31 16 17 O -0.53 0.92 12.84 -35.23 -0.45 0.46 16 18 Si 0.94 -2.50 25.16 -169.99 -4.28 -6.78 16 19 H -0.25 0.50 7.11 56.52 0.40 0.90 16 20 H -0.25 0.23 7.11 56.52 0.40 0.63 16 21 H -0.25 0.65 7.04 56.52 0.40 1.05 16 22 C 0.10 -0.07 9.84 -17.56 -0.17 -0.24 16 23 N -0.45 -0.39 9.54 -9.80 -0.09 -0.49 16 24 C 0.05 0.22 10.84 -17.22 -0.19 0.03 16 25 N -0.28 -1.26 12.56 30.71 0.39 -0.87 16 26 H 0.07 -0.20 7.96 -51.93 -0.41 -0.62 16 27 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 28 H 0.07 -0.06 7.96 -51.92 -0.41 -0.47 16 29 H 0.07 -0.19 7.96 -51.93 -0.41 -0.60 16 30 H 0.08 -0.18 7.96 -51.93 -0.41 -0.59 16 31 H 0.07 -0.23 7.96 -51.93 -0.41 -0.64 16 32 H 0.07 0.14 7.96 -51.93 -0.41 -0.27 16 33 H 0.07 -0.03 7.96 -51.93 -0.41 -0.44 16 34 H 0.07 0.01 7.96 -51.93 -0.41 -0.40 16 35 H 0.10 -0.38 7.96 -51.93 -0.41 -0.79 16 36 H 0.10 -0.17 7.96 -51.93 -0.41 -0.58 16 37 H 0.18 -0.51 8.06 -52.49 -0.42 -0.93 16 38 H 0.42 -0.22 8.15 -40.82 -0.33 -0.55 16 39 H 0.16 -0.03 7.64 -52.48 -0.40 -0.43 16 40 H 0.15 -0.41 8.06 -52.49 -0.42 -0.83 16 41 H 0.12 -0.44 7.96 -51.93 -0.41 -0.86 16 42 H 0.38 -1.81 8.70 45.56 0.40 -1.42 16 43 H 0.16 -0.40 4.88 -52.49 -0.26 -0.66 16 44 H 0.21 1.03 5.91 -52.49 -0.31 0.72 16 LS Contribution 375.80 15.07 5.66 5.66 Total: 0.00 -8.30 375.80 -6.52 -14.83 By element: Atomic # 1 Polarization: -2.82 SS G_CDS: -5.51 Total: -8.34 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: -0.05 Total: 4.80 kcal Atomic # 7 Polarization: -3.16 SS G_CDS: 0.21 Total: -2.96 kcal Atomic # 8 Polarization: -1.78 SS G_CDS: -0.38 Total: -2.16 kcal Atomic # 14 Polarization: -5.38 SS G_CDS: -6.45 Total: -11.83 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -8.30 -6.52 -14.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_13287726.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.541 kcal (2) G-P(sol) polarization free energy of solvation -8.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds