Wall clock time and date at job start Sun Mar 7 2021 10:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86303 * 109.47293 * 2 1 4 4 C 1.86300 * 109.47091 * 240.00078 * 2 1 3 5 5 C 1.86310 * 109.47149 * 120.00317 * 2 1 3 6 6 N 1.46495 * 109.47306 * 59.99952 * 5 2 1 7 7 C 1.35816 * 126.04995 * 270.29123 * 6 5 2 8 8 C 1.35787 * 107.55565 * 180.19624 * 7 6 5 9 9 N 1.40673 * 126.07865 * 179.84030 * 8 7 6 10 10 C 1.34784 * 119.99562 * 179.71531 * 9 8 7 11 11 O 1.21547 * 119.99723 * 359.72645 * 10 9 8 12 12 C 1.48135 * 119.99643 * 179.97438 * 10 9 8 13 13 C 1.39286 * 119.72119 * 180.02562 * 12 10 9 14 14 C 1.38614 * 119.06058 * 179.97438 * 13 12 10 15 15 C 1.38594 * 118.49215 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.32251 * 180.02562 * 15 14 13 17 17 O 1.42901 * 109.47429 * 65.00371 * 16 15 14 18 18 Si 1.86307 * 109.46742 * 184.99989 * 16 15 14 19 19 H 1.48502 * 109.47083 * 60.00382 * 18 16 15 20 20 H 1.48504 * 109.46832 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47379 * 299.99752 * 18 16 15 22 22 C 1.38590 * 119.35127 * 0.02562 * 15 14 13 23 23 N 1.31503 * 120.90272 * 359.74173 * 22 15 14 24 24 C 1.40268 * 107.83201 * 359.57761 * 8 7 6 25 25 N 1.30830 * 108.33522 * 0.26257 * 24 8 7 26 26 H 1.09003 * 109.47113 * 299.99438 * 1 2 3 27 27 H 1.08998 * 109.47610 * 59.99952 * 1 2 3 28 28 H 1.09010 * 109.47293 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.46908 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.46832 * 300.00524 * 3 2 1 31 31 H 1.09003 * 109.46583 * 60.00237 * 3 2 1 32 32 H 1.09006 * 109.47368 * 299.99834 * 4 2 1 33 33 H 1.08999 * 109.47236 * 59.99984 * 4 2 1 34 34 H 1.09003 * 109.47238 * 180.02562 * 4 2 1 35 35 H 1.08999 * 109.46622 * 299.99544 * 5 2 1 36 36 H 1.08998 * 109.46724 * 180.02562 * 5 2 1 37 37 H 1.07996 * 126.22163 * 0.07063 * 7 6 5 38 38 H 0.96999 * 120.00394 * 359.71298 * 9 8 7 39 39 H 1.08007 * 120.46790 * 359.95049 * 13 12 10 40 40 H 1.07998 * 120.75555 * 180.02562 * 14 13 12 41 41 H 1.09000 * 109.47417 * 304.99716 * 16 15 14 42 42 H 0.96694 * 113.99875 * 59.99560 * 17 16 15 43 43 H 1.07999 * 119.54830 * 179.97438 * 22 15 14 44 44 H 1.08002 * 125.83072 * 180.22831 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4839 -0.8782 -1.5211 5 6 2.4840 -0.8784 1.5212 6 7 1.9957 -2.2595 1.5211 7 6 0.8301 -2.6952 2.0653 8 6 0.7556 -4.0347 1.8557 9 7 -0.2920 -4.8801 2.2639 10 6 -0.2423 -6.1978 1.9846 11 8 0.7053 -6.6546 1.3757 12 6 -1.3452 -7.0882 2.4149 13 6 -1.2877 -8.4490 2.1237 14 6 -2.3269 -9.2697 2.5333 15 6 -3.3874 -8.7005 3.2206 16 6 -4.5387 -9.5544 3.6856 17 8 -4.0757 -10.4858 4.6655 18 14 -5.8546 -8.4684 4.4340 19 1 -6.3358 -7.5006 3.4157 20 1 -6.9894 -9.3099 4.8918 21 1 -5.2877 -7.7294 5.5906 22 6 -3.3786 -7.3384 3.4759 23 7 -2.3774 -6.5834 3.0797 24 6 1.9063 -4.4243 1.1544 25 7 2.6458 -3.3636 0.9553 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 3.5740 1.7564 0.0005 30 1 2.1206 2.2703 -0.8899 31 1 2.1207 2.2702 0.8901 32 1 2.1206 -1.9059 -1.5212 33 1 2.1206 -0.3644 -2.4111 34 1 3.5740 -0.8786 -1.5209 35 1 2.1207 -0.3645 2.4111 36 1 3.5740 -0.8779 1.5213 37 1 0.0968 -2.0872 2.5742 38 1 -1.0501 -4.5149 2.7464 39 1 -0.4454 -8.8589 1.5860 40 1 -2.3103 -10.3288 2.3225 41 1 -4.9549 -10.0969 2.8367 42 1 -3.6918 -10.0722 5.4507 43 1 -4.2035 -6.8914 4.0108 44 1 2.1418 -5.4285 0.8341 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_13287726.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:23:25 Heat of formation + Delta-G solvation = 17.797313 kcal Electronic energy + Delta-G solvation = -25497.769112 eV Core-core repulsion = 21768.949314 eV Total energy + Delta-G solvation = -3728.819798 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.137 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.45129 -41.71964 -40.16448 -37.85499 -36.05682 -34.00190 -33.54417 -32.97011 -30.52916 -29.53410 -28.37914 -28.36481 -27.99883 -26.73018 -25.06946 -24.16094 -22.80532 -22.14417 -21.28930 -19.17454 -18.66859 -18.36369 -17.56827 -16.80185 -16.77051 -16.54210 -16.32808 -16.20314 -15.94904 -15.33393 -15.08879 -14.86343 -14.56329 -14.27299 -14.18457 -14.15902 -13.98979 -13.86186 -13.82772 -13.55970 -13.42623 -13.21062 -13.14923 -13.02623 -12.53290 -12.23161 -12.13622 -12.03828 -11.79803 -11.40011 -11.39033 -11.05012 -10.85095 -10.81017 -10.67699 -10.52099 -10.29064 -10.04846 -8.66206 -0.63952 0.07198 0.74136 1.14968 1.29631 1.34138 1.48998 1.55126 1.66165 1.86229 1.92094 1.95989 2.00579 2.14643 2.57165 2.67642 2.91077 3.44408 3.53952 3.62817 3.73154 3.78007 3.93910 3.97682 4.12735 4.25426 4.49404 4.53863 4.63088 4.67508 4.69101 4.72341 4.74905 4.82399 4.82932 4.87076 4.88289 4.89632 4.98739 5.05472 5.37798 5.51339 5.59895 5.65366 5.72734 6.03864 6.23375 6.53619 6.66563 6.68026 7.01253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.460 4.460 2 Si 1.095 2.905 3 C -0.454 4.454 4 C -0.474 4.474 5 C -0.191 4.191 6 N -0.338 5.338 7 C 0.036 3.964 8 C -0.030 4.030 9 N -0.611 5.611 10 C 0.566 3.434 11 O -0.551 6.551 12 C 0.067 3.933 13 C -0.112 4.112 14 C -0.048 4.048 15 C -0.141 4.141 16 C -0.075 4.075 17 O -0.548 6.548 18 Si 0.973 3.027 19 H -0.252 1.252 20 H -0.272 1.272 21 H -0.243 1.243 22 C 0.090 3.910 23 N -0.462 5.462 24 C 0.025 3.975 25 N -0.315 5.315 26 H 0.087 0.913 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.045 0.955 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.132 0.868 36 H 0.105 0.895 37 H 0.219 0.781 38 H 0.430 0.570 39 H 0.152 0.848 40 H 0.168 0.832 41 H 0.136 0.864 42 H 0.391 0.609 43 H 0.177 0.823 44 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.529 4.165 3.608 7.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.568 4.568 2 Si 1.284 2.716 3 C -0.563 4.563 4 C -0.579 4.579 5 C -0.354 4.354 6 N -0.120 5.120 7 C -0.113 4.113 8 C -0.134 4.134 9 N -0.256 5.256 10 C 0.353 3.647 11 O -0.428 6.428 12 C -0.070 4.070 13 C -0.132 4.132 14 C -0.073 4.073 15 C -0.144 4.144 16 C -0.186 4.186 17 O -0.355 6.355 18 Si 0.797 3.203 19 H -0.175 1.175 20 H -0.197 1.197 21 H -0.167 1.167 22 C -0.070 4.070 23 N -0.173 5.173 24 C -0.160 4.160 25 N -0.139 5.139 26 H 0.107 0.893 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.150 0.850 36 H 0.123 0.877 37 H 0.235 0.765 38 H 0.269 0.731 39 H 0.170 0.830 40 H 0.185 0.815 41 H 0.154 0.846 42 H 0.240 0.760 43 H 0.193 0.807 44 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -4.520 5.395 2.815 7.580 hybrid contribution -0.232 -1.334 0.331 1.394 sum -4.753 4.060 3.146 6.998 Atomic orbital electron populations 1.26249 1.20792 1.04189 1.05557 0.78257 0.66183 0.64920 0.62232 1.26125 1.06721 1.17850 1.05557 1.26497 1.06223 1.07494 1.17647 1.27425 1.07126 0.80549 1.20313 1.48294 1.14654 1.07367 1.41684 1.22524 0.92682 0.93445 1.02687 1.17833 0.93778 0.90693 1.11118 1.42446 1.21775 1.06032 1.55303 1.18093 0.85376 0.81953 0.79281 1.90688 1.34672 1.75710 1.41759 1.20847 0.93857 0.92797 0.99509 1.22313 1.00197 0.92657 0.98077 1.21776 0.90912 1.01811 0.92827 1.21788 0.98436 0.95535 0.98607 1.25029 0.98918 0.97960 0.96721 1.86533 1.82427 1.34635 1.31891 0.85326 0.77101 0.77388 0.80523 1.17539 1.19703 1.16695 1.23007 0.96242 0.90549 0.97176 1.67467 1.00762 1.40105 1.08982 1.24331 0.92825 0.98936 0.99892 1.77383 1.21699 0.93197 1.21591 0.89346 0.90948 0.92254 0.90845 0.90695 0.89641 0.93523 0.91221 0.91766 0.84962 0.87676 0.76453 0.73096 0.82982 0.81473 0.84624 0.75958 0.80671 0.79634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.46 8.65 113.37 0.98 3.44 16 2 Si 1.09 -7.02 12.78 68.60 0.88 -6.15 16 3 C -0.45 3.24 8.65 113.37 0.98 4.22 16 4 C -0.47 -0.79 8.65 113.37 0.98 0.19 16 5 C -0.19 0.86 5.59 127.77 0.71 1.57 16 6 N -0.34 -1.03 3.02 -182.91 -0.55 -1.58 16 7 C 0.04 0.02 11.43 83.51 0.95 0.98 16 8 C -0.03 -0.20 6.90 37.65 0.26 0.06 16 9 N -0.61 -2.67 5.46 -306.38 -1.67 -4.34 16 10 C 0.57 4.62 7.78 86.87 0.68 5.29 16 11 O -0.55 -7.55 13.47 -3.86 -0.05 -7.61 16 12 C 0.07 0.30 6.75 41.89 0.28 0.58 16 13 C -0.11 -0.21 9.63 22.61 0.22 0.01 16 14 C -0.05 0.11 9.83 22.44 0.22 0.33 16 15 C -0.14 0.51 5.37 -19.70 -0.11 0.40 16 16 C -0.08 0.48 2.82 71.23 0.20 0.68 16 17 O -0.55 2.46 12.84 -148.98 -1.91 0.55 16 18 Si 0.97 -5.97 25.16 68.60 1.73 -4.25 16 19 H -0.25 1.26 7.11 99.48 0.71 1.97 16 20 H -0.27 0.50 7.11 99.48 0.71 1.20 16 21 H -0.24 1.62 7.04 99.48 0.70 2.32 16 22 C 0.09 -0.18 9.84 84.83 0.83 0.66 16 23 N -0.46 -0.89 9.54 -184.93 -1.76 -2.66 16 24 C 0.03 0.30 10.84 85.34 0.92 1.22 16 25 N -0.31 -3.47 12.56 -56.76 -0.71 -4.18 16 26 H 0.09 -0.76 7.96 -2.39 -0.02 -0.78 16 27 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 28 H 0.06 -0.14 7.96 -2.38 -0.02 -0.16 16 29 H 0.07 -0.48 7.96 -2.39 -0.02 -0.50 16 30 H 0.07 -0.46 7.96 -2.39 -0.02 -0.48 16 31 H 0.08 -0.78 7.96 -2.39 -0.02 -0.80 16 32 H 0.05 0.31 7.96 -2.38 -0.02 0.30 16 33 H 0.07 0.06 7.96 -2.39 -0.02 0.04 16 34 H 0.06 0.16 7.96 -2.39 -0.02 0.14 16 35 H 0.13 -1.43 7.96 -2.39 -0.02 -1.45 16 36 H 0.10 -0.40 7.96 -2.39 -0.02 -0.42 16 37 H 0.22 -1.90 8.06 -2.91 -0.02 -1.92 16 38 H 0.43 -0.33 8.15 -92.71 -0.76 -1.09 16 39 H 0.15 0.26 7.64 -2.91 -0.02 0.24 16 40 H 0.17 -1.03 8.06 -2.91 -0.02 -1.06 16 41 H 0.14 -1.15 7.96 -2.39 -0.02 -1.17 16 42 H 0.39 -4.15 8.70 -74.06 -0.64 -4.79 16 43 H 0.18 -1.10 4.88 -2.91 -0.01 -1.12 16 44 H 0.19 2.71 5.91 -2.91 -0.02 2.70 16 Total: 0.00 -22.20 375.80 4.45 -17.75 By element: Atomic # 1 Polarization: -7.56 SS G_CDS: 0.39 Total: -7.17 kcal Atomic # 6 Polarization: 11.51 SS G_CDS: 8.12 Total: 19.64 kcal Atomic # 7 Polarization: -8.06 SS G_CDS: -4.70 Total: -12.76 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: -1.97 Total: -7.06 kcal Atomic # 14 Polarization: -13.00 SS G_CDS: 2.60 Total: -10.40 kcal Total: -22.20 4.45 -17.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_13287726.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.548 kcal (2) G-P(sol) polarization free energy of solvation -22.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds