Wall clock time and date at job start Sun Mar 7 2021 10:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34685 * 124.85291 * 2 1 4 4 C 1.36772 * 108.39171 * 179.82866 * 3 2 1 5 5 C 1.47266 * 126.93938 * 180.13373 * 4 3 2 6 6 O 1.21647 * 120.00200 * 180.32965 * 5 4 3 7 7 N 1.34781 * 119.99766 * 0.33072 * 5 4 3 8 8 C 1.40741 * 119.99559 * 179.97438 * 7 5 4 9 9 C 1.35757 * 126.07765 * 180.02562 * 8 7 5 10 10 N 1.35835 * 107.56195 * 180.02562 * 9 8 7 11 11 C 1.46503 * 126.05486 * 180.02562 * 10 9 8 12 12 Si 1.86298 * 109.47379 * 89.99663 * 11 10 9 13 13 C 1.86305 * 109.47257 * 59.99673 * 12 11 10 14 14 C 1.86292 * 109.47328 * 179.97438 * 12 11 10 15 15 C 1.86306 * 109.47084 * 299.99763 * 12 11 10 16 16 N 1.40072 * 107.88718 * 359.97438 * 10 9 8 17 17 C 1.30826 * 108.37279 * 359.72247 * 16 10 9 18 18 C 1.46681 * 106.11849 * 0.41270 * 4 3 2 19 19 C 1.34489 * 106.33733 * 359.74158 * 18 4 3 20 20 C 1.50704 * 125.57358 * 180.02562 * 19 18 4 21 21 O 1.42898 * 109.46870 * 149.97791 * 20 19 18 22 22 Si 1.86303 * 109.46891 * 29.98033 * 20 19 18 23 23 H 1.48502 * 109.47289 * 59.99796 * 22 20 19 24 24 H 1.48495 * 109.47077 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46867 * 300.00048 * 22 20 19 26 26 H 1.09002 * 109.47391 * 269.70258 * 1 2 3 27 27 H 1.09001 * 109.46813 * 149.70314 * 1 2 3 28 28 H 1.09004 * 109.47041 * 29.70441 * 1 2 3 29 29 H 1.08001 * 125.80009 * 359.97365 * 3 2 1 30 30 H 0.97002 * 120.00352 * 359.97438 * 7 5 4 31 31 H 1.07997 * 126.22070 * 359.97242 * 9 8 7 32 32 H 1.09000 * 109.46631 * 209.99065 * 11 10 9 33 33 H 1.09001 * 109.47240 * 329.99085 * 11 10 9 34 34 H 1.08995 * 109.47084 * 60.00133 * 13 12 11 35 35 H 1.09003 * 109.47075 * 180.02562 * 13 12 11 36 36 H 1.09004 * 109.46755 * 300.00377 * 13 12 11 37 37 H 1.09001 * 109.47199 * 59.99478 * 14 12 11 38 38 H 1.08999 * 109.47696 * 179.97438 * 14 12 11 39 39 H 1.09006 * 109.47329 * 300.00074 * 14 12 11 40 40 H 1.09006 * 109.46739 * 59.99921 * 15 12 11 41 41 H 1.08994 * 109.47318 * 180.02562 * 15 12 11 42 42 H 1.09000 * 109.47045 * 300.00622 * 15 12 11 43 43 H 1.07994 * 125.83483 * 180.28162 * 17 16 10 44 44 H 1.08001 * 126.83441 * 179.71565 * 18 4 3 45 45 H 1.09000 * 109.47182 * 269.98458 * 20 19 18 46 46 H 0.96691 * 114.00423 * 299.99915 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2347 1.1053 0.0000 4 6 3.5463 0.7177 0.0039 5 6 4.7286 1.5957 0.0080 6 8 5.8450 1.1126 0.0052 7 7 4.5736 2.9346 0.0150 8 6 5.7035 3.7736 0.0195 9 6 5.6912 5.1311 0.0271 10 7 6.9825 5.5527 0.0286 11 6 7.4345 6.9463 0.0367 12 14 7.6274 7.5265 1.7964 13 6 8.8832 6.4612 2.6676 14 6 8.2029 9.2983 1.8066 15 6 5.9894 7.4000 2.6751 16 7 7.8052 4.4191 0.0224 17 6 7.0426 3.3561 0.0233 18 6 3.5376 -0.7491 -0.0038 19 6 2.2448 -1.1197 -0.0057 20 6 1.7398 -2.5396 -0.0126 21 8 0.4810 -2.6007 0.6611 22 14 2.9651 -3.6386 0.8600 23 1 3.1314 -3.1791 2.2624 24 1 2.4679 -5.0378 0.8528 25 1 4.2732 -3.5750 0.1600 26 1 -0.3634 -0.0053 1.0276 27 1 -0.3633 -0.8873 -0.5185 28 1 -0.3633 0.8927 -0.5093 29 1 1.8769 2.1243 -0.0004 30 1 3.6834 3.3198 0.0169 31 1 4.8142 5.7613 0.0303 32 1 8.3929 7.0202 -0.4773 33 1 6.6998 7.5695 -0.4730 34 1 9.8415 6.5352 2.1536 35 1 8.9957 6.8004 3.6974 36 1 8.5468 5.4244 2.6616 37 1 7.4685 9.9218 1.2968 38 1 8.3153 9.6380 2.8362 39 1 9.1614 9.3719 1.2927 40 1 5.6530 6.3632 2.6691 41 1 6.1021 7.7399 3.7045 42 1 5.2546 8.0232 2.1653 43 1 7.3854 2.3320 0.0238 44 1 4.3981 -1.4017 -0.0076 45 1 1.6179 -2.8769 -1.0419 46 1 0.5145 -2.3142 1.5840 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608520_13287730.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:23:36 Heat of formation + Delta-G solvation = 25.690077 kcal Electronic energy + Delta-G solvation = -26307.712761 eV Core-core repulsion = 22551.923741 eV Total energy + Delta-G solvation = -3755.789021 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.153 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.53551 -42.02132 -39.85985 -37.85041 -35.60758 -33.92424 -33.47210 -31.62729 -30.16053 -29.64423 -28.55103 -28.40424 -27.85420 -26.85113 -26.13600 -23.97970 -22.33444 -21.70395 -20.92618 -20.20987 -19.01371 -18.21423 -17.48487 -16.92399 -16.82716 -16.52991 -16.35440 -15.78312 -15.71589 -15.36923 -15.03627 -14.86248 -14.76384 -14.38591 -14.28035 -14.26809 -14.01922 -13.89232 -13.69984 -13.52966 -13.47416 -13.38542 -13.35870 -13.26555 -13.20629 -13.12716 -12.41950 -12.04729 -12.01014 -11.92679 -11.53602 -11.21294 -11.00281 -10.89195 -10.81743 -10.69008 -9.90188 -9.63866 -9.26115 -8.40281 0.62396 0.90540 1.01043 1.35204 1.39982 1.49908 1.53409 1.57251 1.72154 1.82335 1.93849 2.00061 2.06367 2.42136 2.46123 2.81496 3.17146 3.52730 3.72863 3.73505 3.79794 3.95970 4.11622 4.16855 4.36624 4.43520 4.44541 4.52793 4.54025 4.59114 4.61397 4.64563 4.66685 4.75302 4.81292 4.84117 4.86398 4.92732 5.01463 5.34909 5.36348 5.43049 5.61984 5.65104 5.93703 6.06883 6.11500 6.17362 6.30670 6.62268 6.95594 7.45637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.424 5.424 3 C 0.051 3.949 4 C -0.223 4.223 5 C 0.593 3.407 6 O -0.530 6.530 7 N -0.644 5.644 8 C 0.003 3.997 9 C 0.009 3.991 10 N -0.346 5.346 11 C -0.167 4.167 12 Si 1.018 2.982 13 C -0.446 4.446 14 C -0.450 4.450 15 C -0.449 4.449 16 N -0.283 5.283 17 C 0.047 3.953 18 C -0.138 4.138 19 C -0.020 4.020 20 C -0.056 4.056 21 O -0.543 6.543 22 Si 0.969 3.031 23 H -0.249 1.249 24 H -0.251 1.251 25 H -0.245 1.245 26 H 0.077 0.923 27 H 0.101 0.899 28 H 0.081 0.919 29 H 0.172 0.828 30 H 0.405 0.595 31 H 0.174 0.826 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.205 0.795 44 H 0.154 0.846 45 H 0.123 0.877 46 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.999 3.717 1.086 7.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.098 5.098 3 C -0.085 4.085 4 C -0.234 4.234 5 C 0.383 3.617 6 O -0.407 6.407 7 N -0.289 5.289 8 C -0.102 4.102 9 C -0.140 4.140 10 N -0.129 5.129 11 C -0.333 4.333 12 Si 1.213 2.787 13 C -0.554 4.554 14 C -0.558 4.558 15 C -0.557 4.557 16 N -0.106 5.106 17 C -0.139 4.139 18 C -0.162 4.162 19 C -0.129 4.129 20 C -0.166 4.166 21 O -0.348 6.348 22 Si 0.789 3.211 23 H -0.172 1.172 24 H -0.175 1.175 25 H -0.168 1.168 26 H 0.095 0.905 27 H 0.120 0.880 28 H 0.100 0.900 29 H 0.189 0.811 30 H 0.240 0.760 31 H 0.191 0.809 32 H 0.122 0.878 33 H 0.116 0.884 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.222 0.778 44 H 0.171 0.829 45 H 0.140 0.860 46 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -4.977 3.100 0.859 5.926 hybrid contribution -1.649 0.675 0.031 1.782 sum -6.626 3.775 0.890 7.678 Atomic orbital electron populations 1.22283 0.76087 1.05190 1.03992 1.43478 1.07078 1.04869 1.54424 1.21928 0.90045 0.91849 1.04677 1.20135 0.91168 0.93847 1.18250 1.17344 0.88305 0.80473 0.75596 1.90670 1.25585 1.74778 1.49659 1.42613 1.07251 1.05168 1.73824 1.17653 0.88264 0.88946 1.15335 1.21821 0.89312 0.93855 1.08968 1.47944 1.03129 1.05499 1.56343 1.26920 1.04910 0.79616 1.21885 0.79385 0.68215 0.66840 0.64286 1.26067 1.11711 1.10075 1.07567 1.26100 1.06278 1.18374 1.05050 1.26121 1.16550 1.04719 1.08327 1.77445 1.18267 0.91011 1.23869 1.24505 0.89570 0.99412 1.00449 1.21742 0.95072 0.93201 1.06156 1.20823 0.90550 0.89242 1.12315 1.24767 0.93720 0.94546 1.03549 1.86483 1.29786 1.89630 1.28889 0.85426 0.77372 0.78167 0.80176 1.17247 1.17491 1.16781 0.90461 0.88034 0.90009 0.81130 0.75987 0.80879 0.87785 0.88430 0.91044 0.91282 0.90943 0.91013 0.90613 0.90869 0.91066 0.90801 0.91174 0.77839 0.82865 0.85975 0.77510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.26 9.81 59.85 0.59 0.33 16 2 N -0.42 0.51 3.09 -119.88 -0.37 0.14 16 3 C 0.05 -0.06 10.83 -16.83 -0.18 -0.24 16 4 C -0.22 -0.43 6.29 -103.35 -0.65 -1.08 16 5 C 0.59 2.19 7.78 -12.59 -0.10 2.09 16 6 O -0.53 -3.81 14.12 5.24 0.07 -3.73 16 7 N -0.64 -0.69 5.46 -11.05 -0.06 -0.75 16 8 C 0.00 0.01 6.90 -83.89 -0.58 -0.57 16 9 C 0.01 0.01 11.44 -16.67 -0.19 -0.18 16 10 N -0.35 -0.64 3.01 -9.16 -0.03 -0.66 16 11 C -0.17 0.23 5.59 59.85 0.33 0.56 16 12 Si 1.02 -2.68 12.79 -169.99 -2.17 -4.85 16 13 C -0.45 -0.12 8.65 101.05 0.87 0.75 16 14 C -0.45 1.15 8.65 101.05 0.87 2.03 16 15 C -0.45 0.89 8.65 101.05 0.87 1.77 16 16 N -0.28 -1.43 12.56 30.70 0.39 -1.04 16 17 C 0.05 0.25 10.84 -17.22 -0.19 0.06 16 18 C -0.14 -0.29 9.49 -37.50 -0.36 -0.65 16 19 C -0.02 0.00 6.14 -81.86 -0.50 -0.50 16 20 C -0.06 0.08 2.87 36.01 0.10 0.19 16 21 O -0.54 1.10 10.32 -35.23 -0.36 0.74 16 22 Si 0.97 -0.81 26.56 -169.99 -4.51 -5.33 16 23 H -0.25 -0.03 7.11 56.52 0.40 0.37 16 24 H -0.25 -0.05 7.11 56.52 0.40 0.35 16 25 H -0.24 -0.06 6.81 56.52 0.38 0.32 16 26 H 0.08 -0.39 8.14 -51.93 -0.42 -0.81 16 27 H 0.10 -0.33 6.73 -51.93 -0.35 -0.68 16 28 H 0.08 -0.44 8.13 -51.93 -0.42 -0.86 16 29 H 0.17 -0.84 7.45 -52.49 -0.39 -1.23 16 30 H 0.41 -1.10 7.77 -40.82 -0.32 -1.41 16 31 H 0.17 -0.54 8.06 -52.49 -0.42 -0.96 16 32 H 0.10 -0.13 7.96 -51.93 -0.41 -0.54 16 33 H 0.10 -0.35 7.96 -51.93 -0.41 -0.76 16 34 H 0.07 0.04 7.96 -51.93 -0.41 -0.38 16 35 H 0.07 -0.01 7.96 -51.93 -0.41 -0.43 16 36 H 0.07 0.17 7.96 -51.93 -0.41 -0.25 16 37 H 0.07 -0.22 7.96 -51.93 -0.41 -0.63 16 38 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 39 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 40 H 0.07 -0.06 7.96 -51.93 -0.41 -0.48 16 41 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 42 H 0.07 -0.20 7.96 -51.93 -0.41 -0.62 16 43 H 0.21 1.29 5.91 -52.49 -0.31 0.98 16 44 H 0.15 0.35 6.69 -52.49 -0.35 0.00 16 45 H 0.12 -0.27 7.96 -51.93 -0.41 -0.69 16 46 H 0.38 -1.76 8.70 45.56 0.40 -1.36 16 LS Contribution 386.01 15.07 5.82 5.82 Total: 0.00 -10.22 386.01 -6.70 -16.92 By element: Atomic # 1 Polarization: -5.42 SS G_CDS: -6.37 Total: -11.79 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: 0.90 Total: 4.54 kcal Atomic # 7 Polarization: -2.24 SS G_CDS: -0.07 Total: -2.31 kcal Atomic # 8 Polarization: -2.71 SS G_CDS: -0.29 Total: -3.00 kcal Atomic # 14 Polarization: -3.49 SS G_CDS: -6.69 Total: -10.18 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -10.22 -6.70 -16.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_13287730.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.610 kcal (2) G-P(sol) polarization free energy of solvation -10.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds