Wall clock time and date at job start Sun Mar 7 2021 10:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34685 * 124.85291 * 2 1 4 4 C 1.36772 * 108.39171 * 179.82866 * 3 2 1 5 5 C 1.47266 * 126.93938 * 180.13373 * 4 3 2 6 6 O 1.21647 * 120.00200 * 180.32965 * 5 4 3 7 7 N 1.34781 * 119.99766 * 0.33072 * 5 4 3 8 8 C 1.40741 * 119.99559 * 179.97438 * 7 5 4 9 9 C 1.35757 * 126.07765 * 180.02562 * 8 7 5 10 10 N 1.35835 * 107.56195 * 180.02562 * 9 8 7 11 11 C 1.46503 * 126.05486 * 180.02562 * 10 9 8 12 12 Si 1.86298 * 109.47379 * 89.99663 * 11 10 9 13 13 C 1.86305 * 109.47257 * 59.99673 * 12 11 10 14 14 C 1.86292 * 109.47328 * 179.97438 * 12 11 10 15 15 C 1.86306 * 109.47084 * 299.99763 * 12 11 10 16 16 N 1.40072 * 107.88718 * 359.97438 * 10 9 8 17 17 C 1.30826 * 108.37279 * 359.72247 * 16 10 9 18 18 C 1.46681 * 106.11849 * 0.41270 * 4 3 2 19 19 C 1.34489 * 106.33733 * 359.74158 * 18 4 3 20 20 C 1.50704 * 125.57358 * 180.02562 * 19 18 4 21 21 O 1.42898 * 109.46870 * 149.97791 * 20 19 18 22 22 Si 1.86303 * 109.46891 * 29.98033 * 20 19 18 23 23 H 1.48502 * 109.47289 * 59.99796 * 22 20 19 24 24 H 1.48495 * 109.47077 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46867 * 300.00048 * 22 20 19 26 26 H 1.09002 * 109.47391 * 269.70258 * 1 2 3 27 27 H 1.09001 * 109.46813 * 149.70314 * 1 2 3 28 28 H 1.09004 * 109.47041 * 29.70441 * 1 2 3 29 29 H 1.08001 * 125.80009 * 359.97365 * 3 2 1 30 30 H 0.97002 * 120.00352 * 359.97438 * 7 5 4 31 31 H 1.07997 * 126.22070 * 359.97242 * 9 8 7 32 32 H 1.09000 * 109.46631 * 209.99065 * 11 10 9 33 33 H 1.09001 * 109.47240 * 329.99085 * 11 10 9 34 34 H 1.08995 * 109.47084 * 60.00133 * 13 12 11 35 35 H 1.09003 * 109.47075 * 180.02562 * 13 12 11 36 36 H 1.09004 * 109.46755 * 300.00377 * 13 12 11 37 37 H 1.09001 * 109.47199 * 59.99478 * 14 12 11 38 38 H 1.08999 * 109.47696 * 179.97438 * 14 12 11 39 39 H 1.09006 * 109.47329 * 300.00074 * 14 12 11 40 40 H 1.09006 * 109.46739 * 59.99921 * 15 12 11 41 41 H 1.08994 * 109.47318 * 180.02562 * 15 12 11 42 42 H 1.09000 * 109.47045 * 300.00622 * 15 12 11 43 43 H 1.07994 * 125.83483 * 180.28162 * 17 16 10 44 44 H 1.08001 * 126.83441 * 179.71565 * 18 4 3 45 45 H 1.09000 * 109.47182 * 269.98458 * 20 19 18 46 46 H 0.96691 * 114.00423 * 299.99915 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2347 1.1053 0.0000 4 6 3.5463 0.7177 0.0039 5 6 4.7286 1.5957 0.0080 6 8 5.8450 1.1126 0.0052 7 7 4.5736 2.9346 0.0150 8 6 5.7035 3.7736 0.0195 9 6 5.6912 5.1311 0.0271 10 7 6.9825 5.5527 0.0286 11 6 7.4345 6.9463 0.0367 12 14 7.6274 7.5265 1.7964 13 6 8.8832 6.4612 2.6676 14 6 8.2029 9.2983 1.8066 15 6 5.9894 7.4000 2.6751 16 7 7.8052 4.4191 0.0224 17 6 7.0426 3.3561 0.0233 18 6 3.5376 -0.7491 -0.0038 19 6 2.2448 -1.1197 -0.0057 20 6 1.7398 -2.5396 -0.0126 21 8 0.4810 -2.6007 0.6611 22 14 2.9651 -3.6386 0.8600 23 1 3.1314 -3.1791 2.2624 24 1 2.4679 -5.0378 0.8528 25 1 4.2732 -3.5750 0.1600 26 1 -0.3634 -0.0053 1.0276 27 1 -0.3633 -0.8873 -0.5185 28 1 -0.3633 0.8927 -0.5093 29 1 1.8769 2.1243 -0.0004 30 1 3.6834 3.3198 0.0169 31 1 4.8142 5.7613 0.0303 32 1 8.3929 7.0202 -0.4773 33 1 6.6998 7.5695 -0.4730 34 1 9.8415 6.5352 2.1536 35 1 8.9957 6.8004 3.6974 36 1 8.5468 5.4244 2.6616 37 1 7.4685 9.9218 1.2968 38 1 8.3153 9.6380 2.8362 39 1 9.1614 9.3719 1.2927 40 1 5.6530 6.3632 2.6691 41 1 6.1021 7.7399 3.7045 42 1 5.2546 8.0232 2.1653 43 1 7.3854 2.3320 0.0238 44 1 4.3981 -1.4017 -0.0076 45 1 1.6179 -2.8769 -1.0419 46 1 0.5145 -2.3142 1.5840 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_13287730.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:23:35 Heat of formation + Delta-G solvation = 26.943328 kcal Electronic energy + Delta-G solvation = -26307.658416 eV Core-core repulsion = 22551.923741 eV Total energy + Delta-G solvation = -3755.734676 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.153 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.53155 -42.14418 -40.05819 -37.71704 -35.80989 -33.89153 -33.51541 -31.62970 -30.23838 -29.50784 -28.36991 -28.33038 -27.72329 -26.81345 -26.09741 -24.05339 -22.46317 -21.82500 -20.93753 -20.23717 -19.00022 -18.28212 -17.39729 -16.97351 -16.78364 -16.57470 -16.43327 -15.77057 -15.69496 -15.34817 -15.16625 -14.84090 -14.80660 -14.32598 -14.16881 -14.14208 -13.98740 -13.81937 -13.79290 -13.42345 -13.38232 -13.20375 -13.18461 -13.12730 -13.06801 -13.01211 -12.39343 -12.12711 -12.06014 -11.91227 -11.73182 -11.32804 -10.96873 -10.83878 -10.79192 -10.71863 -9.99630 -9.63867 -9.24301 -8.52801 0.58043 0.91014 0.96924 1.36471 1.40692 1.48137 1.52915 1.69002 1.81316 1.89185 1.89448 2.03566 2.10300 2.35781 2.59009 2.65827 3.36523 3.59460 3.77781 3.87434 3.96353 4.03635 4.28052 4.37033 4.43278 4.51943 4.60076 4.64610 4.69970 4.71789 4.75421 4.76263 4.83859 4.84389 4.85656 4.88143 4.89802 4.94746 5.00088 5.18833 5.51937 5.61280 5.61624 5.66693 5.83569 5.96952 6.13276 6.25859 6.56698 6.58316 6.76370 7.32885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.421 5.421 3 C 0.079 3.921 4 C -0.258 4.258 5 C 0.585 3.415 6 O -0.582 6.582 7 N -0.626 5.626 8 C -0.020 4.020 9 C 0.031 3.969 10 N -0.341 5.341 11 C -0.190 4.190 12 Si 1.094 2.906 13 C -0.476 4.476 14 C -0.454 4.454 15 C -0.457 4.457 16 N -0.320 5.320 17 C 0.018 3.982 18 C -0.172 4.172 19 C -0.017 4.017 20 C -0.040 4.040 21 O -0.543 6.543 22 Si 0.994 3.006 23 H -0.264 1.264 24 H -0.261 1.261 25 H -0.271 1.271 26 H 0.093 0.907 27 H 0.096 0.904 28 H 0.104 0.896 29 H 0.215 0.785 30 H 0.425 0.575 31 H 0.223 0.777 32 H 0.101 0.899 33 H 0.133 0.867 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.044 0.956 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.071 0.929 42 H 0.090 0.910 43 H 0.179 0.821 44 H 0.134 0.866 45 H 0.134 0.866 46 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.611 6.717 0.768 12.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.095 5.095 3 C -0.059 4.059 4 C -0.268 4.268 5 C 0.376 3.624 6 O -0.463 6.463 7 N -0.272 5.272 8 C -0.125 4.125 9 C -0.118 4.118 10 N -0.123 5.123 11 C -0.353 4.353 12 Si 1.283 2.717 13 C -0.580 4.580 14 C -0.563 4.563 15 C -0.565 4.565 16 N -0.144 5.144 17 C -0.166 4.166 18 C -0.197 4.197 19 C -0.127 4.127 20 C -0.151 4.151 21 O -0.350 6.350 22 Si 0.818 3.182 23 H -0.188 1.188 24 H -0.185 1.185 25 H -0.196 1.196 26 H 0.111 0.889 27 H 0.115 0.885 28 H 0.122 0.878 29 H 0.232 0.768 30 H 0.264 0.736 31 H 0.239 0.761 32 H 0.119 0.881 33 H 0.151 0.849 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.063 0.937 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.109 0.891 43 H 0.196 0.804 44 H 0.152 0.848 45 H 0.151 0.849 46 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -8.604 6.085 0.566 10.553 hybrid contribution -0.483 -0.218 0.185 0.561 sum -9.086 5.867 0.751 10.842 Atomic orbital electron populations 1.22527 0.73905 1.06139 1.05314 1.43737 1.08287 1.04285 1.53175 1.22467 0.88616 0.93494 1.01318 1.20096 0.92032 0.93454 1.21252 1.17738 0.88226 0.81396 0.74991 1.90650 1.27560 1.75790 1.52268 1.42394 1.07818 1.04186 1.72777 1.17812 0.87740 0.90132 1.16773 1.22520 0.90042 0.93306 1.05938 1.48277 1.03434 1.05842 1.54770 1.27402 1.06045 0.78186 1.23675 0.78275 0.66081 0.65309 0.62028 1.26529 1.13244 1.09686 1.08540 1.26129 1.06693 1.18204 1.05232 1.26201 1.17246 1.04463 1.08581 1.77367 1.19516 0.92091 1.25434 1.24284 0.91472 0.98723 1.02164 1.21783 0.95726 0.93848 1.08310 1.20870 0.90030 0.90339 1.11414 1.24525 0.93419 0.93263 1.03927 1.86468 1.28972 1.89629 1.29941 0.85056 0.76429 0.77671 0.79037 1.18818 1.18531 1.19567 0.88895 0.88498 0.87762 0.76818 0.73592 0.76063 0.88051 0.84878 0.91972 0.91255 0.93658 0.89540 0.90711 0.90987 0.92107 0.90979 0.89137 0.80434 0.84828 0.84895 0.76090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.65 9.81 127.77 1.25 0.60 16 2 N -0.42 1.70 3.09 -533.20 -1.65 0.05 16 3 C 0.08 -0.32 10.83 83.91 0.91 0.59 16 4 C -0.26 -1.29 6.29 -19.04 -0.12 -1.41 16 5 C 0.59 5.68 7.78 86.62 0.67 6.36 16 6 O -0.58 -11.10 14.12 -4.18 -0.06 -11.16 16 7 N -0.63 -1.56 5.46 -307.09 -1.68 -3.24 16 8 C -0.02 -0.13 6.90 37.63 0.26 0.13 16 9 C 0.03 0.00 11.44 83.50 0.96 0.95 16 10 N -0.34 -1.18 3.01 -182.91 -0.55 -1.73 16 11 C -0.19 0.80 5.59 127.77 0.71 1.51 16 12 Si 1.09 -6.86 12.79 68.60 0.88 -5.98 16 13 C -0.48 -1.17 8.65 113.37 0.98 -0.19 16 14 C -0.45 3.20 8.65 113.37 0.98 4.18 16 15 C -0.46 2.75 8.65 113.37 0.98 3.73 16 16 N -0.32 -4.04 12.56 -56.77 -0.71 -4.75 16 17 C 0.02 0.26 10.84 85.33 0.92 1.18 16 18 C -0.17 -1.14 9.49 23.62 0.22 -0.92 16 19 C -0.02 -0.01 6.14 40.98 0.25 0.24 16 20 C -0.04 0.11 2.87 71.24 0.20 0.32 16 21 O -0.54 2.82 10.32 -148.98 -1.54 1.28 16 22 Si 0.99 0.23 26.56 68.60 1.82 2.06 16 23 H -0.26 -0.64 7.11 99.48 0.71 0.07 16 24 H -0.26 -0.44 7.11 99.48 0.71 0.26 16 25 H -0.27 -1.17 6.81 99.48 0.68 -0.49 16 26 H 0.09 -1.23 8.14 -2.39 -0.02 -1.25 16 27 H 0.10 -0.87 6.73 -2.39 -0.02 -0.89 16 28 H 0.10 -1.53 8.13 -2.38 -0.02 -1.55 16 29 H 0.22 -2.97 7.45 -2.91 -0.02 -2.99 16 30 H 0.43 -3.05 7.77 -92.71 -0.72 -3.77 16 31 H 0.22 -2.37 8.06 -2.91 -0.02 -2.40 16 32 H 0.10 -0.31 7.96 -2.39 -0.02 -0.32 16 33 H 0.13 -1.46 7.96 -2.39 -0.02 -1.48 16 34 H 0.06 0.22 7.96 -2.39 -0.02 0.20 16 35 H 0.07 0.10 7.96 -2.39 -0.02 0.08 16 36 H 0.04 0.35 7.96 -2.39 -0.02 0.34 16 37 H 0.09 -0.81 7.96 -2.39 -0.02 -0.83 16 38 H 0.07 -0.46 7.96 -2.39 -0.02 -0.48 16 39 H 0.07 -0.45 7.96 -2.38 -0.02 -0.47 16 40 H 0.06 -0.20 7.96 -2.38 -0.02 -0.21 16 41 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 42 H 0.09 -0.88 7.96 -2.39 -0.02 -0.89 16 43 H 0.18 3.30 5.91 -2.91 -0.02 3.29 16 44 H 0.13 1.24 6.69 -2.91 -0.02 1.22 16 45 H 0.13 -0.63 7.96 -2.39 -0.02 -0.65 16 46 H 0.39 -4.12 8.70 -74.06 -0.64 -4.76 16 Total: 0.00 -30.63 386.01 6.07 -24.56 By element: Atomic # 1 Polarization: -18.72 SS G_CDS: 0.36 Total: -18.36 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: 9.19 Total: 17.28 kcal Atomic # 7 Polarization: -5.08 SS G_CDS: -4.59 Total: -9.67 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: -1.60 Total: -9.88 kcal Atomic # 14 Polarization: -6.63 SS G_CDS: 2.70 Total: -3.93 kcal Total: -30.63 6.07 -24.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_13287730.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.504 kcal (2) G-P(sol) polarization free energy of solvation -30.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds