Wall clock time and date at job start Sun Mar 7 2021 10:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86294 * 1 3 3 C 1.86307 * 109.47028 * 2 1 4 4 C 1.86306 * 109.47308 * 240.00335 * 2 1 3 5 5 C 1.86301 * 109.47496 * 120.00007 * 2 1 3 6 6 N 1.46507 * 109.46523 * 60.00213 * 5 2 1 7 7 C 1.35817 * 126.05121 * 90.00292 * 6 5 2 8 8 C 1.35776 * 107.55690 * 180.02562 * 7 6 5 9 9 N 1.40707 * 126.08030 * 179.97438 * 8 7 6 10 10 C 1.34777 * 119.99954 * 180.02562 * 9 8 7 11 11 O 1.21585 * 119.99858 * 359.97438 * 10 9 8 12 12 C 1.47818 * 120.00469 * 179.97438 * 10 9 8 13 13 C 1.39986 * 120.56635 * 180.24616 * 12 10 9 14 14 C 1.38402 * 118.28804 * 180.26782 * 13 12 10 15 15 C 1.50705 * 120.34687 * 179.75129 * 14 13 12 16 16 O 1.42902 * 109.46822 * 64.97879 * 15 14 13 17 17 Si 1.86289 * 109.46980 * 184.97896 * 15 14 13 18 18 H 1.48507 * 109.47457 * 60.00440 * 17 15 14 19 19 H 1.48504 * 109.47034 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47619 * 299.99977 * 17 15 14 21 21 C 1.38304 * 119.30649 * 359.73470 * 14 13 12 22 22 N 1.31960 * 121.08342 * 0.02562 * 21 14 13 23 23 C 1.31668 * 121.87959 * 359.97438 * 22 21 14 24 24 C 1.40260 * 107.83600 * 0.22835 * 8 7 6 25 25 N 1.30827 * 108.33722 * 359.61190 * 24 8 7 26 26 H 1.08994 * 109.47235 * 299.99395 * 1 2 3 27 27 H 1.08999 * 109.47481 * 60.00088 * 1 2 3 28 28 H 1.09004 * 109.47051 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46956 * 179.97438 * 3 2 1 30 30 H 1.08990 * 109.47094 * 300.00253 * 3 2 1 31 31 H 1.09003 * 109.46682 * 59.99975 * 3 2 1 32 32 H 1.09004 * 109.46964 * 299.99604 * 4 2 1 33 33 H 1.09002 * 109.47156 * 59.99930 * 4 2 1 34 34 H 1.09001 * 109.47257 * 179.97438 * 4 2 1 35 35 H 1.08994 * 109.47366 * 300.00517 * 5 2 1 36 36 H 1.08995 * 109.47430 * 179.97438 * 5 2 1 37 37 H 1.07999 * 126.22718 * 0.07098 * 7 6 5 38 38 H 0.96996 * 120.00316 * 359.97438 * 9 8 7 39 39 H 1.08002 * 120.85588 * 359.97438 * 13 12 10 40 40 H 1.08996 * 109.46887 * 304.98287 * 15 14 13 41 41 H 0.96701 * 113.99507 * 59.99742 * 16 15 14 42 42 H 1.08001 * 119.45782 * 179.97438 * 21 14 13 43 43 H 1.08002 * 119.71439 * 179.97438 * 23 22 21 44 44 H 1.08000 * 125.83178 * 179.77504 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4841 -0.8782 1.5211 6 7 1.9957 -2.2595 1.5210 7 6 2.6259 -3.3300 0.9719 8 6 1.8447 -4.4196 1.1866 9 7 2.1282 -5.7359 0.7781 10 6 1.2615 -6.7295 1.0573 11 8 0.2349 -6.4886 1.6626 12 6 1.5588 -8.1123 0.6277 13 6 0.6645 -9.1524 0.9070 14 6 0.9927 -10.4299 0.4879 15 6 0.0664 -11.5850 0.7688 16 8 -1.1598 -11.3954 0.0599 17 14 0.8666 -13.1724 0.2119 18 1 2.1410 -13.3695 0.9485 19 1 -0.0464 -14.3105 0.4881 20 1 1.1431 -13.1028 -1.2455 21 6 2.1796 -10.6354 -0.1918 22 7 3.0015 -9.6347 -0.4455 23 6 2.7339 -8.4021 -0.0675 24 6 0.7023 -3.9987 1.8829 25 7 0.7960 -2.7098 2.0866 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.5739 1.7565 0.0005 30 1 2.1206 2.2703 -0.8899 31 1 2.1205 2.2703 0.8900 32 1 2.1207 -1.9059 -1.5212 33 1 2.1207 -0.3643 -2.4112 34 1 3.5740 -0.8778 -1.5214 35 1 2.1207 -0.3645 2.4111 36 1 3.5740 -0.8786 1.5209 37 1 3.5760 -3.3172 0.4585 38 1 2.9469 -5.9281 0.2949 39 1 -0.2556 -8.9636 1.4401 40 1 -0.1365 -11.6361 1.8385 41 1 -1.0548 -11.3406 -0.8998 42 1 2.4383 -11.6314 -0.5197 43 1 3.4318 -7.6095 -0.2933 44 1 -0.1140 -4.6310 2.1994 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608520_13287814.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:24:26 Heat of formation + Delta-G solvation = 16.966779 kcal Electronic energy + Delta-G solvation = -25589.922207 eV Core-core repulsion = 21861.066394 eV Total energy + Delta-G solvation = -3728.855813 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.137 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.39347 -41.72548 -40.09736 -38.00749 -35.99252 -33.91777 -33.76670 -33.03299 -30.37996 -29.69298 -28.58951 -28.45311 -27.38393 -27.25226 -25.63286 -23.94073 -22.80031 -22.09586 -21.01842 -19.20330 -18.70454 -18.05665 -17.83869 -17.59209 -16.69306 -16.57459 -16.44637 -16.02741 -15.87192 -15.26633 -15.04685 -14.96625 -14.69278 -14.38274 -14.32535 -14.24442 -14.08327 -13.94922 -13.81806 -13.59017 -13.56375 -13.42238 -13.26084 -13.17519 -12.78709 -12.30663 -12.22523 -12.10118 -11.66548 -11.38036 -11.26878 -11.07533 -11.04828 -10.94121 -10.64767 -10.55898 -10.37952 -10.03035 -8.60890 -0.64923 -0.05990 0.77031 0.96763 1.25548 1.29876 1.37782 1.43764 1.57938 1.67335 1.77781 1.81974 2.09932 2.13202 2.40442 2.63712 2.96171 3.26374 3.35263 3.53480 3.61949 3.67867 3.70018 3.86035 4.04082 4.11634 4.27620 4.45016 4.47380 4.55565 4.57609 4.60197 4.61479 4.62741 4.72403 4.76404 4.79554 4.81423 4.87986 5.10073 5.25844 5.32124 5.39206 5.56868 5.89802 6.00566 6.28436 6.38586 6.57423 6.79127 7.04668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.447 4.447 2 Si 1.020 2.980 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.169 4.169 6 N -0.343 5.343 7 C 0.018 3.982 8 C -0.007 4.007 9 N -0.636 5.636 10 C 0.566 3.434 11 O -0.517 6.517 12 C -0.184 4.184 13 C 0.017 3.983 14 C -0.179 4.179 15 C -0.077 4.077 16 O -0.534 6.534 17 Si 0.943 3.057 18 H -0.245 1.245 19 H -0.246 1.246 20 H -0.247 1.247 21 C 0.121 3.879 22 N -0.477 5.477 23 C 0.139 3.861 24 C 0.048 3.952 25 N -0.281 5.281 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.177 0.823 38 H 0.409 0.591 39 H 0.156 0.844 40 H 0.125 0.875 41 H 0.378 0.622 42 H 0.158 0.842 43 H 0.162 0.838 44 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.600 0.654 -3.020 5.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.555 4.555 2 Si 1.214 2.786 3 C -0.558 4.558 4 C -0.558 4.558 5 C -0.335 4.335 6 N -0.125 5.125 7 C -0.131 4.131 8 C -0.111 4.111 9 N -0.281 5.281 10 C 0.353 3.647 11 O -0.393 6.393 12 C -0.190 4.190 13 C -0.009 4.009 14 C -0.181 4.181 15 C -0.188 4.188 16 O -0.339 6.339 17 Si 0.764 3.236 18 H -0.169 1.169 19 H -0.169 1.169 20 H -0.170 1.170 21 C -0.035 4.035 22 N -0.184 5.184 23 C -0.020 4.020 24 C -0.138 4.138 25 N -0.104 5.104 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.124 0.876 36 H 0.117 0.883 37 H 0.194 0.806 38 H 0.245 0.755 39 H 0.174 0.826 40 H 0.142 0.858 41 H 0.225 0.775 42 H 0.175 0.825 43 H 0.179 0.821 44 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 4.307 0.980 -2.146 4.911 hybrid contribution 0.346 -0.208 -0.462 0.613 sum 4.654 0.772 -2.607 5.390 Atomic orbital electron populations 1.26072 1.20051 1.04924 1.04425 0.79367 0.68094 0.66375 0.64737 1.26098 1.06380 1.18244 1.05097 1.26130 1.06137 1.08288 1.15229 1.26974 1.04472 0.83172 1.18890 1.48001 1.15605 1.06404 1.42527 1.21885 1.00164 0.86484 1.04563 1.17607 0.98729 0.84448 1.10319 1.42581 1.23777 1.04842 1.56875 1.17931 0.83219 0.83989 0.79512 1.90711 1.25554 1.83031 1.39962 1.20901 0.98456 0.94414 1.05204 1.21640 0.97773 0.89958 0.91576 1.21408 0.97954 0.96909 1.01827 1.24959 0.88701 1.03024 1.02136 1.86570 1.28136 1.95865 1.23279 0.85765 0.79914 0.76681 0.81193 1.16877 1.16915 1.17038 1.22940 0.89516 0.98543 0.92531 1.67731 1.31706 0.99776 1.19232 1.23044 0.93468 0.94330 0.91127 1.24477 0.98863 0.91799 0.98641 1.77476 1.01146 1.12226 1.19505 0.91021 0.91220 0.90991 0.90973 0.90566 0.90859 0.91115 0.90731 0.91107 0.87642 0.88256 0.80587 0.75483 0.82627 0.85768 0.77490 0.82543 0.82135 0.77861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.14 8.65 101.05 0.87 1.02 16 2 Si 1.02 -3.31 12.79 -169.99 -2.17 -5.48 16 3 C -0.45 1.36 8.65 101.05 0.87 2.23 16 4 C -0.45 1.14 8.65 101.05 0.87 2.01 16 5 C -0.17 0.36 5.59 59.85 0.33 0.69 16 6 N -0.34 -0.31 3.01 -9.17 -0.03 -0.33 16 7 C 0.02 -0.01 11.44 -16.67 -0.19 -0.20 16 8 C -0.01 -0.01 6.90 -83.90 -0.58 -0.59 16 9 N -0.64 0.27 5.43 -10.90 -0.06 0.21 16 10 C 0.57 0.92 7.75 -12.34 -0.10 0.83 16 11 O -0.52 -2.46 13.57 5.29 0.07 -2.39 16 12 C -0.18 -0.04 5.89 -104.83 -0.62 -0.66 16 13 C 0.02 0.01 9.38 -38.87 -0.36 -0.36 16 14 C -0.18 0.13 5.35 -104.53 -0.56 -0.43 16 15 C -0.08 0.14 2.82 36.01 0.10 0.24 16 16 O -0.53 0.41 12.84 -35.23 -0.45 -0.04 16 17 Si 0.94 -1.97 25.16 -169.99 -4.28 -6.25 16 18 H -0.25 0.38 7.11 56.52 0.40 0.78 16 19 H -0.25 0.11 7.11 56.52 0.40 0.52 16 20 H -0.25 0.53 7.04 56.52 0.40 0.93 16 21 C 0.12 -0.04 9.84 -17.47 -0.17 -0.21 16 22 N -0.48 -0.30 10.35 -12.91 -0.13 -0.44 16 23 C 0.14 -0.13 10.71 -17.12 -0.18 -0.32 16 24 C 0.05 0.19 10.83 -17.22 -0.19 0.00 16 25 N -0.28 -1.12 12.56 30.71 0.39 -0.73 16 26 H 0.07 0.00 7.96 -51.93 -0.41 -0.42 16 27 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 28 H 0.07 0.12 7.96 -51.93 -0.41 -0.30 16 29 H 0.07 -0.25 7.96 -51.93 -0.41 -0.66 16 30 H 0.08 -0.20 7.96 -51.93 -0.41 -0.62 16 31 H 0.07 -0.21 7.96 -51.93 -0.41 -0.62 16 32 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 33 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 34 H 0.07 -0.24 7.96 -51.93 -0.41 -0.65 16 35 H 0.11 -0.21 7.96 -51.93 -0.41 -0.62 16 36 H 0.10 -0.43 7.96 -51.93 -0.41 -0.84 16 37 H 0.18 -0.73 8.06 -52.49 -0.42 -1.15 16 38 H 0.41 -1.61 6.89 -40.82 -0.28 -1.89 16 39 H 0.16 0.11 7.74 -52.49 -0.41 -0.30 16 40 H 0.12 -0.31 7.96 -51.93 -0.41 -0.73 16 41 H 0.38 -1.52 8.70 45.56 0.40 -1.13 16 42 H 0.16 -0.31 4.87 -52.49 -0.26 -0.57 16 43 H 0.16 -0.70 6.42 -52.49 -0.34 -1.04 16 44 H 0.21 0.96 5.91 -52.49 -0.31 0.65 16 LS Contribution 373.58 15.07 5.63 5.63 Total: 0.00 -9.49 373.58 -6.30 -15.79 By element: Atomic # 1 Polarization: -4.84 SS G_CDS: -5.38 Total: -10.22 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: 0.11 Total: 4.25 kcal Atomic # 7 Polarization: -1.46 SS G_CDS: 0.17 Total: -1.30 kcal Atomic # 8 Polarization: -2.05 SS G_CDS: -0.38 Total: -2.43 kcal Atomic # 14 Polarization: -5.28 SS G_CDS: -6.45 Total: -11.73 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -9.49 -6.30 -15.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_13287814.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.757 kcal (2) G-P(sol) polarization free energy of solvation -9.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds