Wall clock time and date at job start Sun Mar 7 2021 10:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86294 * 1 3 3 C 1.86307 * 109.47028 * 2 1 4 4 C 1.86306 * 109.47308 * 240.00335 * 2 1 3 5 5 C 1.86301 * 109.47496 * 120.00007 * 2 1 3 6 6 N 1.46507 * 109.46523 * 60.00213 * 5 2 1 7 7 C 1.35817 * 126.05121 * 90.00292 * 6 5 2 8 8 C 1.35776 * 107.55690 * 180.02562 * 7 6 5 9 9 N 1.40707 * 126.08030 * 179.97438 * 8 7 6 10 10 C 1.34777 * 119.99954 * 180.02562 * 9 8 7 11 11 O 1.21585 * 119.99858 * 359.97438 * 10 9 8 12 12 C 1.47818 * 120.00469 * 179.97438 * 10 9 8 13 13 C 1.39986 * 120.56635 * 180.24616 * 12 10 9 14 14 C 1.38402 * 118.28804 * 180.26782 * 13 12 10 15 15 C 1.50705 * 120.34687 * 179.75129 * 14 13 12 16 16 O 1.42902 * 109.46822 * 64.97879 * 15 14 13 17 17 Si 1.86289 * 109.46980 * 184.97896 * 15 14 13 18 18 H 1.48507 * 109.47457 * 60.00440 * 17 15 14 19 19 H 1.48504 * 109.47034 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47619 * 299.99977 * 17 15 14 21 21 C 1.38304 * 119.30649 * 359.73470 * 14 13 12 22 22 N 1.31960 * 121.08342 * 0.02562 * 21 14 13 23 23 C 1.31668 * 121.87959 * 359.97438 * 22 21 14 24 24 C 1.40260 * 107.83600 * 0.22835 * 8 7 6 25 25 N 1.30827 * 108.33722 * 359.61190 * 24 8 7 26 26 H 1.08994 * 109.47235 * 299.99395 * 1 2 3 27 27 H 1.08999 * 109.47481 * 60.00088 * 1 2 3 28 28 H 1.09004 * 109.47051 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46956 * 179.97438 * 3 2 1 30 30 H 1.08990 * 109.47094 * 300.00253 * 3 2 1 31 31 H 1.09003 * 109.46682 * 59.99975 * 3 2 1 32 32 H 1.09004 * 109.46964 * 299.99604 * 4 2 1 33 33 H 1.09002 * 109.47156 * 59.99930 * 4 2 1 34 34 H 1.09001 * 109.47257 * 179.97438 * 4 2 1 35 35 H 1.08994 * 109.47366 * 300.00517 * 5 2 1 36 36 H 1.08995 * 109.47430 * 179.97438 * 5 2 1 37 37 H 1.07999 * 126.22718 * 0.07098 * 7 6 5 38 38 H 0.96996 * 120.00316 * 359.97438 * 9 8 7 39 39 H 1.08002 * 120.85588 * 359.97438 * 13 12 10 40 40 H 1.08996 * 109.46887 * 304.98287 * 15 14 13 41 41 H 0.96701 * 113.99507 * 59.99742 * 16 15 14 42 42 H 1.08001 * 119.45782 * 179.97438 * 21 14 13 43 43 H 1.08002 * 119.71439 * 179.97438 * 23 22 21 44 44 H 1.08000 * 125.83178 * 179.77504 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4841 -0.8782 1.5211 6 7 1.9957 -2.2595 1.5210 7 6 2.6259 -3.3300 0.9719 8 6 1.8447 -4.4196 1.1866 9 7 2.1282 -5.7359 0.7781 10 6 1.2615 -6.7295 1.0573 11 8 0.2349 -6.4886 1.6626 12 6 1.5588 -8.1123 0.6277 13 6 0.6645 -9.1524 0.9070 14 6 0.9927 -10.4299 0.4879 15 6 0.0664 -11.5850 0.7688 16 8 -1.1598 -11.3954 0.0599 17 14 0.8666 -13.1724 0.2119 18 1 2.1410 -13.3695 0.9485 19 1 -0.0464 -14.3105 0.4881 20 1 1.1431 -13.1028 -1.2455 21 6 2.1796 -10.6354 -0.1918 22 7 3.0015 -9.6347 -0.4455 23 6 2.7339 -8.4021 -0.0675 24 6 0.7023 -3.9987 1.8829 25 7 0.7960 -2.7098 2.0866 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.5739 1.7565 0.0005 30 1 2.1206 2.2703 -0.8899 31 1 2.1205 2.2703 0.8900 32 1 2.1207 -1.9059 -1.5212 33 1 2.1207 -0.3643 -2.4112 34 1 3.5740 -0.8778 -1.5214 35 1 2.1207 -0.3645 2.4111 36 1 3.5740 -0.8786 1.5209 37 1 3.5760 -3.3172 0.4585 38 1 2.9469 -5.9281 0.2949 39 1 -0.2556 -8.9636 1.4401 40 1 -0.1365 -11.6361 1.8385 41 1 -1.0548 -11.3406 -0.8998 42 1 2.4383 -11.6314 -0.5197 43 1 3.4318 -7.6095 -0.2933 44 1 -0.1140 -4.6310 2.1994 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_13287814.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:24:25 Heat of formation + Delta-G solvation = 17.676959 kcal Electronic energy + Delta-G solvation = -25589.891411 eV Core-core repulsion = 21861.066394 eV Total energy + Delta-G solvation = -3728.825017 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.137 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.45244 -41.71904 -40.17152 -37.92006 -36.07907 -33.93816 -33.73284 -33.02361 -30.40785 -29.51344 -28.37247 -28.32951 -27.29772 -27.20163 -25.64351 -23.90271 -22.86786 -22.09698 -21.09615 -19.17532 -18.69338 -18.00222 -17.79390 -17.55253 -16.72232 -16.59506 -16.37570 -15.99807 -15.88593 -15.31396 -15.02122 -14.90705 -14.65417 -14.25972 -14.16976 -14.14660 -13.99984 -13.84400 -13.81933 -13.50479 -13.41289 -13.20667 -13.13385 -13.01545 -12.69890 -12.23538 -12.15334 -12.01515 -11.76787 -11.39371 -11.36674 -11.07814 -10.84234 -10.79710 -10.57635 -10.53955 -10.30818 -10.03722 -8.65192 -0.62304 -0.02870 0.77994 1.11285 1.33271 1.40467 1.46174 1.52322 1.67432 1.87839 1.90604 1.96058 2.05063 2.17538 2.58393 2.64771 3.08272 3.37137 3.46834 3.63919 3.71384 3.72946 3.75927 3.98064 4.09488 4.22803 4.29805 4.57069 4.58653 4.69038 4.70824 4.73078 4.75702 4.83875 4.84470 4.85154 4.87724 4.89370 4.92334 5.03775 5.30947 5.51933 5.61482 5.66359 5.74097 6.06650 6.33204 6.61343 6.66016 6.68035 7.03446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.476 4.476 2 Si 1.097 2.903 3 C -0.456 4.456 4 C -0.459 4.459 5 C -0.190 4.190 6 N -0.339 5.339 7 C 0.037 3.963 8 C -0.027 4.027 9 N -0.618 5.618 10 C 0.562 3.438 11 O -0.558 6.558 12 C -0.190 4.190 13 C 0.004 3.996 14 C -0.175 4.175 15 C -0.079 4.079 16 O -0.551 6.551 17 Si 0.980 3.020 18 H -0.250 1.250 19 H -0.271 1.271 20 H -0.241 1.241 21 C 0.118 3.882 22 N -0.494 5.494 23 C 0.147 3.853 24 C 0.023 3.977 25 N -0.318 5.318 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.046 0.954 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.134 0.866 37 H 0.224 0.776 38 H 0.427 0.573 39 H 0.144 0.856 40 H 0.128 0.872 41 H 0.390 0.610 42 H 0.172 0.828 43 H 0.195 0.805 44 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.639 1.204 -4.257 8.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.580 4.580 2 Si 1.286 2.714 3 C -0.564 4.564 4 C -0.566 4.566 5 C -0.353 4.353 6 N -0.121 5.121 7 C -0.112 4.112 8 C -0.131 4.131 9 N -0.265 5.265 10 C 0.350 3.650 11 O -0.437 6.437 12 C -0.195 4.195 13 C -0.022 4.022 14 C -0.177 4.177 15 C -0.190 4.190 16 O -0.358 6.358 17 Si 0.802 3.198 18 H -0.173 1.173 19 H -0.196 1.196 20 H -0.164 1.164 21 C -0.038 4.038 22 N -0.202 5.202 23 C -0.012 4.012 24 C -0.162 4.162 25 N -0.142 5.142 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.065 0.935 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.108 0.892 35 H 0.121 0.879 36 H 0.152 0.848 37 H 0.240 0.760 38 H 0.267 0.733 39 H 0.161 0.839 40 H 0.145 0.855 41 H 0.240 0.760 42 H 0.189 0.811 43 H 0.212 0.788 44 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 7.337 1.543 -3.402 8.234 hybrid contribution -0.642 -0.301 -0.077 0.713 sum 6.696 1.242 -3.479 7.647 Atomic orbital electron populations 1.26523 1.24507 1.03031 1.03934 0.78230 0.63902 0.65806 0.63507 1.26149 1.07333 1.17956 1.04977 1.26222 1.07483 1.07688 1.15235 1.27410 1.06711 0.81710 1.19509 1.48306 1.14627 1.07733 1.41460 1.22582 1.00784 0.85049 1.02797 1.17743 0.98573 0.85710 1.11100 1.42412 1.24002 1.03829 1.56234 1.18191 0.82920 0.84783 0.79061 1.90704 1.27380 1.83659 1.41975 1.20838 0.99192 0.93477 1.05992 1.21677 0.97707 0.90830 0.92008 1.21438 0.98109 0.96619 1.01561 1.25091 0.88344 1.03060 1.02477 1.86536 1.28818 1.95902 1.24576 0.85249 0.78624 0.74755 0.81166 1.17333 1.19555 1.16397 1.23210 0.89317 0.99166 0.92122 1.67801 1.32133 1.00364 1.19896 1.23497 0.93201 0.94718 0.89756 1.24315 0.99722 0.92068 1.00079 1.77402 1.03251 1.12393 1.21202 0.91936 0.91308 0.93514 0.89602 0.90775 0.90987 0.92017 0.91041 0.89203 0.87903 0.84828 0.75986 0.73285 0.83861 0.85466 0.76018 0.81097 0.78797 0.80001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 -0.53 8.65 113.37 0.98 0.45 16 2 Si 1.10 -8.16 12.79 68.60 0.88 -7.28 16 3 C -0.46 3.52 8.65 113.37 0.98 4.50 16 4 C -0.46 3.18 8.65 113.37 0.98 4.16 16 5 C -0.19 1.09 5.59 127.77 0.71 1.81 16 6 N -0.34 -0.46 3.01 -182.91 -0.55 -1.01 16 7 C 0.04 -0.09 11.44 83.51 0.96 0.87 16 8 C -0.03 -0.09 6.90 37.64 0.26 0.17 16 9 N -0.62 0.57 5.43 -306.65 -1.66 -1.09 16 10 C 0.56 2.62 7.75 86.78 0.67 3.29 16 11 O -0.56 -7.09 13.57 -3.98 -0.05 -7.14 16 12 C -0.19 -0.21 5.89 -20.00 -0.12 -0.33 16 13 C 0.00 0.01 9.38 22.73 0.21 0.22 16 14 C -0.17 0.15 5.35 -19.81 -0.11 0.04 16 15 C -0.08 0.23 2.82 71.24 0.20 0.43 16 16 O -0.55 0.37 12.84 -148.98 -1.91 -1.55 16 17 Si 0.98 -4.14 25.16 68.60 1.73 -2.41 16 18 H -0.25 0.88 7.11 99.48 0.71 1.59 16 19 H -0.27 0.03 7.11 99.48 0.71 0.74 16 20 H -0.24 1.27 7.04 99.48 0.70 1.97 16 21 C 0.12 -0.13 9.84 84.69 0.83 0.70 16 22 N -0.49 -0.18 10.35 -194.74 -2.01 -2.19 16 23 C 0.15 -0.41 10.71 85.04 0.91 0.50 16 24 C 0.02 0.24 10.83 85.33 0.92 1.17 16 25 N -0.32 -3.17 12.56 -56.77 -0.71 -3.88 16 26 H 0.06 0.14 7.96 -2.39 -0.02 0.12 16 27 H 0.07 0.03 7.96 -2.39 -0.02 0.01 16 28 H 0.05 0.29 7.96 -2.38 -0.02 0.27 16 29 H 0.08 -0.85 7.96 -2.39 -0.02 -0.87 16 30 H 0.07 -0.49 7.96 -2.39 -0.02 -0.51 16 31 H 0.07 -0.50 7.96 -2.39 -0.02 -0.52 16 32 H 0.06 -0.28 7.96 -2.38 -0.02 -0.29 16 33 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 34 H 0.09 -0.93 7.96 -2.39 -0.02 -0.95 16 35 H 0.10 -0.47 7.96 -2.39 -0.02 -0.49 16 36 H 0.13 -1.65 7.96 -2.39 -0.02 -1.67 16 37 H 0.22 -2.79 8.06 -2.91 -0.02 -2.82 16 38 H 0.43 -4.10 6.89 -92.71 -0.64 -4.74 16 39 H 0.14 0.62 7.74 -2.91 -0.02 0.60 16 40 H 0.13 -0.50 7.96 -2.39 -0.02 -0.52 16 41 H 0.39 -2.91 8.70 -74.06 -0.64 -3.56 16 42 H 0.17 -0.83 4.87 -2.91 -0.01 -0.85 16 43 H 0.20 -2.13 6.42 -2.91 -0.02 -2.15 16 44 H 0.18 2.56 5.91 -2.91 -0.02 2.54 16 Total: 0.00 -25.71 373.58 4.61 -21.10 By element: Atomic # 1 Polarization: -13.03 SS G_CDS: 0.51 Total: -12.53 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: 8.40 Total: 17.98 kcal Atomic # 7 Polarization: -3.23 SS G_CDS: -4.94 Total: -8.17 kcal Atomic # 8 Polarization: -6.72 SS G_CDS: -1.97 Total: -8.69 kcal Atomic # 14 Polarization: -12.30 SS G_CDS: 2.60 Total: -9.70 kcal Total: -25.71 4.61 -21.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_13287814.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.777 kcal (2) G-P(sol) polarization free energy of solvation -25.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds