Wall clock time and date at job start Sun Mar 7 2021 10:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36408 * 125.80467 * 2 1 4 4 C 1.47381 * 127.19461 * 0.06135 * 3 2 1 5 5 O 1.21639 * 119.99601 * 359.97431 * 4 3 2 6 6 N 1.34769 * 120.00204 * 179.97438 * 4 3 2 7 7 C 1.40746 * 119.99832 * 180.02562 * 6 4 3 8 8 C 1.35756 * 126.08059 * 180.02562 * 7 6 4 9 9 N 1.35830 * 107.56326 * 180.02562 * 8 7 6 10 10 C 1.46492 * 126.05910 * 179.97438 * 9 8 7 11 11 Si 1.86302 * 109.46898 * 90.00119 * 10 9 8 12 12 C 1.86300 * 109.47216 * 59.99941 * 11 10 9 13 13 C 1.86294 * 109.47236 * 180.02562 * 11 10 9 14 14 C 1.86303 * 109.47234 * 300.00140 * 11 10 9 15 15 N 1.40076 * 107.88809 * 359.97438 * 9 8 7 16 16 C 1.30837 * 108.36763 * 359.71876 * 15 9 8 17 17 C 1.47020 * 105.62054 * 180.02562 * 3 2 1 18 18 C 1.34184 * 105.95357 * 359.97438 * 17 3 2 19 19 C 1.50700 * 125.43720 * 179.97438 * 18 17 3 20 20 O 1.42904 * 109.47044 * 300.00136 * 19 18 17 21 21 Si 1.86292 * 109.47270 * 180.02562 * 19 18 17 22 22 H 1.48504 * 109.47120 * 59.99800 * 21 19 18 23 23 H 1.48496 * 109.47382 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46942 * 299.99980 * 21 19 18 25 25 O 1.33672 * 125.80158 * 180.02562 * 2 1 3 26 26 H 1.08996 * 109.47415 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47055 * 300.00214 * 1 2 3 28 28 H 1.08998 * 109.46985 * 60.00084 * 1 2 3 29 29 H 0.96996 * 120.00419 * 359.97438 * 6 4 3 30 30 H 1.08000 * 126.21899 * 359.97438 * 8 7 6 31 31 H 1.08995 * 109.47492 * 210.00236 * 10 9 8 32 32 H 1.08995 * 109.47561 * 330.00374 * 10 9 8 33 33 H 1.09002 * 109.47106 * 60.00030 * 12 11 10 34 34 H 1.09003 * 109.47357 * 179.97438 * 12 11 10 35 35 H 1.09000 * 109.47238 * 300.00070 * 12 11 10 36 36 H 1.09004 * 109.47422 * 60.00385 * 13 11 10 37 37 H 1.09004 * 109.47464 * 179.97438 * 13 11 10 38 38 H 1.09000 * 109.47712 * 300.00121 * 13 11 10 39 39 H 1.09000 * 109.47113 * 59.99995 * 14 11 10 40 40 H 1.09000 * 109.47353 * 179.97438 * 14 11 10 41 41 H 1.08999 * 109.46909 * 300.00334 * 14 11 10 42 42 H 1.08004 * 125.82860 * 180.25622 * 16 15 9 43 43 H 1.07999 * 127.02375 * 180.26021 * 17 3 2 44 44 H 1.09006 * 109.47066 * 59.99783 * 19 18 17 45 45 H 0.96697 * 114.00267 * 299.99962 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.1063 0.0000 4 6 1.8741 2.5157 0.0013 5 8 0.6889 2.7892 0.0020 6 7 2.7932 3.5014 0.0016 7 6 2.3816 4.8473 0.0033 8 6 3.1970 5.9327 0.0034 9 7 2.4078 7.0382 0.0059 10 6 2.8706 8.4281 0.0074 11 14 3.0647 9.0198 -1.7485 12 6 1.4242 8.9125 -2.6249 13 6 3.6541 10.7871 -1.7467 14 6 4.3106 7.9512 -2.6298 15 7 1.0728 6.6139 0.0069 16 6 1.0561 5.3057 -0.0011 17 6 3.6849 0.5990 -0.0006 18 6 3.5859 -0.7392 -0.0004 19 6 4.7460 -1.7011 -0.0014 20 8 5.5415 -1.4868 -1.1690 21 14 4.1029 -3.4495 -0.0013 22 1 3.2741 -3.6722 -1.2133 23 1 5.2459 -4.3975 -0.0029 24 1 3.2758 -3.6727 1.2118 25 8 2.2890 -1.0841 -0.0005 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 3.7383 3.2833 0.0014 30 1 4.2769 5.9196 0.0025 31 1 2.1418 9.0533 0.5230 32 1 3.8304 8.4909 0.5201 33 1 0.6953 9.5377 -2.1093 34 1 1.5377 9.2591 -3.6521 35 1 1.0798 7.8783 -2.6259 36 1 4.6141 10.8495 -1.2341 37 1 3.7681 11.1331 -2.7740 38 1 2.9255 11.4126 -1.2309 39 1 3.9662 6.9171 -2.6309 40 1 4.4238 8.2971 -3.6572 41 1 5.2704 8.0140 -2.1170 42 1 0.1724 4.6847 -0.0064 43 1 4.5928 1.1839 0.0031 44 1 5.3546 -1.5374 0.8880 45 1 5.0636 -1.6153 -1.9997 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_13308374.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:24:36 Heat of formation + Delta-G solvation = -9.292755 kcal Electronic energy + Delta-G solvation = -26536.192239 eV Core-core repulsion = 22681.167587 eV Total energy + Delta-G solvation = -3855.024652 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.142 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.79057 -42.28831 -40.29924 -37.98000 -35.93411 -34.30356 -33.54587 -33.09387 -30.54513 -29.55127 -29.28942 -28.37280 -28.33104 -27.15068 -25.76096 -24.40199 -22.89696 -22.35414 -21.37542 -20.46062 -18.86815 -18.32581 -17.91673 -17.72834 -16.78524 -16.73035 -16.53849 -15.97252 -15.91786 -15.56413 -15.16529 -15.00883 -14.56353 -14.22202 -14.18703 -14.14503 -14.01966 -13.95707 -13.84586 -13.81477 -13.78358 -13.40846 -13.20500 -13.13782 -13.02036 -12.88970 -12.76480 -12.23687 -12.17418 -12.06377 -11.75925 -11.35976 -11.11162 -10.93018 -10.84473 -10.80015 -10.56867 -10.02086 -9.61611 -8.59583 0.15505 0.73734 0.90610 1.08993 1.32583 1.40561 1.47033 1.67542 1.70482 1.72805 1.88064 1.92514 2.03931 2.25349 2.41992 2.58199 3.23111 3.49903 3.65874 3.77555 3.78672 4.00740 4.10438 4.29245 4.41877 4.50077 4.58995 4.59801 4.66559 4.69336 4.71424 4.73760 4.75625 4.79189 4.83262 4.84127 4.87488 4.88876 5.07790 5.16365 5.22421 5.51842 5.60749 5.65968 5.78488 5.89088 6.08510 6.44161 6.57625 6.70883 7.14874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.085 3.915 3 C -0.263 4.263 4 C 0.587 3.413 5 O -0.560 6.560 6 N -0.622 5.622 7 C -0.023 4.023 8 C 0.031 3.969 9 N -0.340 5.340 10 C -0.190 4.190 11 Si 1.095 2.905 12 C -0.474 4.474 13 C -0.454 4.454 14 C -0.459 4.459 15 N -0.317 5.317 16 C 0.024 3.976 17 C -0.142 4.142 18 C -0.064 4.064 19 C -0.028 4.028 20 O -0.536 6.536 21 Si 0.983 3.017 22 H -0.265 1.265 23 H -0.254 1.254 24 H -0.266 1.266 25 O -0.180 6.180 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.425 0.575 30 H 0.219 0.781 31 H 0.103 0.897 32 H 0.132 0.868 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.046 0.954 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.186 0.814 43 H 0.186 0.814 44 H 0.157 0.843 45 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.428 0.620 -0.350 7.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.032 3.968 3 C -0.267 4.267 4 C 0.377 3.623 5 O -0.440 6.440 6 N -0.268 5.268 7 C -0.127 4.127 8 C -0.118 4.118 9 N -0.122 5.122 10 C -0.353 4.353 11 Si 1.284 2.716 12 C -0.579 4.579 13 C -0.563 4.563 14 C -0.567 4.567 15 N -0.142 5.142 16 C -0.161 4.161 17 C -0.161 4.161 18 C -0.112 4.112 19 C -0.139 4.139 20 O -0.344 6.344 21 Si 0.807 3.193 22 H -0.189 1.189 23 H -0.178 1.178 24 H -0.191 1.191 25 O -0.078 6.078 26 H 0.113 0.887 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.263 0.737 30 H 0.235 0.765 31 H 0.121 0.879 32 H 0.150 0.850 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.107 0.893 42 H 0.203 0.797 43 H 0.203 0.797 44 H 0.174 0.826 45 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 5.983 0.926 0.143 6.056 hybrid contribution 0.062 -0.457 -0.330 0.567 sum 6.045 0.469 -0.187 6.066 Atomic orbital electron populations 1.20588 0.82690 1.04927 1.05163 1.23164 0.94732 0.82986 0.95954 1.21019 0.94568 0.92634 1.18490 1.17333 0.84969 0.84177 0.75785 1.90674 1.17922 1.83927 1.51465 1.42360 1.10525 1.01827 1.72067 1.17785 0.92968 0.84724 1.17260 1.22506 0.99017 0.84534 1.05738 1.48273 1.02964 1.06300 1.54678 1.27399 1.04816 0.79494 1.23620 0.78255 0.64740 0.66584 0.62028 1.26500 1.19641 1.03144 1.08574 1.26137 1.06943 1.18007 1.05235 1.26231 1.12454 1.09328 1.08655 1.77384 0.98645 1.12826 1.25319 1.24335 0.98461 0.91486 1.01845 1.22834 0.96290 0.93491 1.03444 1.23073 0.82680 0.96407 1.09026 1.24351 0.90074 1.05897 0.93597 1.86547 1.38635 1.93200 1.15968 0.85129 0.78803 0.74452 0.80908 1.18874 1.17787 1.19090 1.83698 1.17235 1.35209 1.71636 0.88675 0.88608 0.88549 0.73699 0.76462 0.87861 0.85029 0.91844 0.91249 0.93510 0.89642 0.90718 0.90905 0.92179 0.90981 0.89321 0.79708 0.79717 0.82552 0.75677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.08 9.14 71.24 0.65 0.57 16 2 C 0.09 0.34 7.37 25.26 0.19 0.52 16 3 C -0.26 -1.00 6.31 -18.99 -0.12 -1.12 16 4 C 0.59 4.04 7.78 86.65 0.67 4.71 16 5 O -0.56 -7.10 12.81 -4.15 -0.05 -7.15 16 6 N -0.62 -1.27 5.47 -307.01 -1.68 -2.95 16 7 C -0.02 -0.12 6.90 37.62 0.26 0.14 16 8 C 0.03 -0.01 11.44 83.50 0.96 0.94 16 9 N -0.34 -0.87 3.01 -182.93 -0.55 -1.42 16 10 C -0.19 0.90 5.59 127.77 0.71 1.61 16 11 Si 1.09 -7.29 12.79 68.60 0.88 -6.41 16 12 C -0.47 -0.72 8.65 113.37 0.98 0.26 16 13 C -0.45 3.29 8.65 113.37 0.98 4.27 16 14 C -0.46 2.68 8.65 113.37 0.98 3.66 16 15 N -0.32 -3.40 12.57 -56.77 -0.71 -4.12 16 16 C 0.02 0.27 10.83 85.33 0.92 1.19 16 17 C -0.14 0.17 10.46 23.65 0.25 0.42 16 18 C -0.06 0.04 6.20 24.76 0.15 0.19 16 19 C -0.03 0.13 2.98 71.24 0.21 0.34 16 20 O -0.54 2.41 12.86 -148.98 -1.92 0.49 16 21 Si 0.98 -2.28 27.37 68.60 1.88 -0.41 16 22 H -0.26 -0.04 7.11 99.48 0.71 0.67 16 23 H -0.25 0.22 7.11 99.48 0.71 0.93 16 24 H -0.27 -0.25 7.11 99.48 0.71 0.46 16 25 O -0.18 -0.53 8.89 4.35 0.04 -0.49 16 26 H 0.09 -0.25 8.14 -2.39 -0.02 -0.27 16 27 H 0.10 0.18 8.08 -2.38 -0.02 0.16 16 28 H 0.10 0.17 8.08 -2.39 -0.02 0.15 16 29 H 0.42 -2.23 8.00 -92.71 -0.74 -2.97 16 30 H 0.22 -2.18 8.06 -2.91 -0.02 -2.20 16 31 H 0.10 -0.40 7.96 -2.39 -0.02 -0.41 16 32 H 0.13 -1.46 7.96 -2.39 -0.02 -1.48 16 33 H 0.06 0.16 7.96 -2.39 -0.02 0.14 16 34 H 0.07 0.05 7.96 -2.39 -0.02 0.03 16 35 H 0.05 0.31 7.96 -2.39 -0.02 0.29 16 36 H 0.08 -0.80 7.96 -2.38 -0.02 -0.81 16 37 H 0.07 -0.47 7.96 -2.38 -0.02 -0.49 16 38 H 0.07 -0.48 7.96 -2.39 -0.02 -0.50 16 39 H 0.06 -0.18 7.96 -2.39 -0.02 -0.20 16 40 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 41 H 0.09 -0.81 7.96 -2.39 -0.02 -0.83 16 42 H 0.19 2.63 5.91 -2.91 -0.02 2.61 16 43 H 0.19 -1.33 7.74 -2.91 -0.02 -1.35 16 44 H 0.16 -1.35 7.96 -2.38 -0.02 -1.37 16 45 H 0.39 -3.89 8.70 -74.06 -0.64 -4.54 16 Total: 0.00 -23.18 386.33 6.07 -17.11 By element: Atomic # 1 Polarization: -12.75 SS G_CDS: 0.39 Total: -12.36 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: 7.80 Total: 17.72 kcal Atomic # 7 Polarization: -5.55 SS G_CDS: -2.94 Total: -8.49 kcal Atomic # 8 Polarization: -5.23 SS G_CDS: -1.93 Total: -7.16 kcal Atomic # 14 Polarization: -9.57 SS G_CDS: 2.75 Total: -6.82 kcal Total: -23.18 6.07 -17.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_13308374.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.814 kcal (2) G-P(sol) polarization free energy of solvation -23.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds