Wall clock time and date at job start Sun Mar 7 2021 10:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86296 * 1 3 3 C 1.86298 * 109.47036 * 2 1 4 4 C 1.86298 * 109.47029 * 240.00267 * 2 1 3 5 5 C 1.86295 * 109.47329 * 120.00047 * 2 1 3 6 6 N 1.46501 * 109.46907 * 60.00268 * 5 2 1 7 7 C 1.35818 * 126.05589 * 90.00185 * 6 5 2 8 8 C 1.35772 * 107.56016 * 179.97438 * 7 6 5 9 9 N 1.40722 * 126.07913 * 179.97438 * 8 7 6 10 10 C 1.34781 * 119.99660 * 180.02562 * 9 8 7 11 11 O 1.21614 * 119.99976 * 0.02562 * 10 9 8 12 12 C 1.47522 * 119.99702 * 180.02562 * 10 9 8 13 13 C 1.39667 * 120.19514 * 0.02562 * 12 10 9 14 14 C 1.37825 * 119.90904 * 179.97438 * 13 12 10 15 15 C 1.38501 * 120.30104 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.80889 * 180.02562 * 15 14 13 17 17 O 1.42896 * 109.47430 * 119.99694 * 16 15 14 18 18 Si 1.86304 * 109.46995 * 0.02562 * 16 15 14 19 19 H 1.48496 * 109.47221 * 59.99843 * 18 16 15 20 20 H 1.48496 * 109.47161 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46984 * 299.99914 * 18 16 15 22 22 C 1.38107 * 120.38946 * 0.04523 * 15 14 13 23 23 C 1.38653 * 120.08443 * 359.95377 * 22 15 14 24 24 O 1.35658 * 120.15152 * 180.29908 * 23 22 15 25 25 C 1.40264 * 107.83575 * 0.24571 * 8 7 6 26 26 N 1.30828 * 108.33335 * 359.58554 * 25 8 7 27 27 H 1.09003 * 109.47128 * 299.99917 * 1 2 3 28 28 H 1.09002 * 109.47295 * 59.99823 * 1 2 3 29 29 H 1.09002 * 109.47119 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47375 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47223 * 300.00221 * 3 2 1 32 32 H 1.09003 * 109.47094 * 60.00062 * 3 2 1 33 33 H 1.09002 * 109.47286 * 300.00040 * 4 2 1 34 34 H 1.09002 * 109.47156 * 59.99824 * 4 2 1 35 35 H 1.09000 * 109.47289 * 179.97438 * 4 2 1 36 36 H 1.09003 * 109.47045 * 300.00086 * 5 2 1 37 37 H 1.09000 * 109.47066 * 179.97438 * 5 2 1 38 38 H 1.07998 * 126.22014 * 359.97438 * 7 6 5 39 39 H 0.96993 * 119.99924 * 0.02562 * 9 8 7 40 40 H 1.08006 * 120.04308 * 0.02562 * 13 12 10 41 41 H 1.07999 * 119.85277 * 179.97438 * 14 13 12 42 42 H 1.09003 * 109.47571 * 240.00228 * 16 15 14 43 43 H 0.96698 * 114.00646 * 180.02562 * 17 16 15 44 44 H 1.07996 * 119.95784 * 180.02562 * 22 15 14 45 45 H 0.96706 * 113.99967 * 269.72393 * 24 23 22 46 46 H 1.07995 * 125.83145 * 179.75653 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7564 0.0000 4 6 2.4839 -0.8782 -1.5212 5 6 2.4840 -0.8782 1.5211 6 7 1.9957 -2.2594 1.5210 7 6 2.6258 -3.3300 0.9720 8 6 1.8453 -4.4198 1.1877 9 7 2.1290 -5.7363 0.7796 10 6 1.2628 -6.7301 1.0599 11 8 0.2359 -6.4890 1.6652 12 6 1.5604 -8.1103 0.6326 13 6 2.7388 -8.3919 -0.0623 14 6 3.0112 -9.6836 -0.4583 15 6 2.1216 -10.7052 -0.1700 16 6 2.4309 -12.1136 -0.6077 17 8 2.5006 -12.9643 0.5383 18 14 4.0654 -12.1414 -1.5012 19 1 5.1354 -11.6598 -0.5911 20 1 4.3705 -13.5294 -1.9321 21 1 3.9936 -11.2574 -2.6922 22 6 0.9525 -10.4407 0.5161 23 6 0.6624 -9.1471 0.9221 24 8 -0.4827 -8.8868 1.6014 25 6 0.7029 -3.9989 1.8843 26 7 0.7966 -2.7099 2.0876 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.5739 1.7565 -0.0005 31 1 2.1206 2.2703 -0.8900 32 1 2.1206 2.2703 0.8900 33 1 2.1206 -1.9058 -1.5212 34 1 2.1206 -0.3643 -2.4111 35 1 3.5739 -0.8778 -1.5214 36 1 2.1207 -0.3644 2.4111 37 1 3.5740 -0.8786 1.5208 38 1 3.5752 -3.3169 0.4573 39 1 2.9478 -5.9285 0.2965 40 1 3.4360 -7.5985 -0.2882 41 1 3.9225 -9.9002 -0.9959 42 1 1.6453 -12.4674 -1.2755 43 1 2.6973 -13.8881 0.3312 44 1 0.2640 -11.2427 0.7376 45 1 -1.2335 -8.6617 1.0350 46 1 -0.1130 -4.6313 2.2014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_13422076.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:25:03 Heat of formation + Delta-G solvation = -33.154920 kcal Electronic energy + Delta-G solvation = -27821.238529 eV Core-core repulsion = 23836.952996 eV Total energy + Delta-G solvation = -3984.285534 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 349.142 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.39151 -41.43058 -39.80562 -38.36339 -37.19880 -35.86600 -33.83174 -32.85689 -31.12730 -30.37462 -29.51717 -28.37337 -28.33739 -27.74502 -26.63023 -23.90156 -23.83738 -22.58042 -22.05143 -21.06001 -19.32889 -18.73652 -18.39513 -18.26316 -17.35732 -16.75062 -16.55683 -16.47157 -16.22034 -15.82577 -15.73321 -15.29366 -15.05559 -14.70492 -14.51301 -14.17923 -14.14949 -14.01305 -13.94295 -13.82544 -13.80038 -13.41191 -13.34659 -13.20551 -13.13415 -13.03360 -13.01810 -12.44415 -12.16763 -12.07584 -11.94215 -11.75982 -11.58153 -11.36428 -10.87343 -10.84379 -10.79554 -10.44034 -10.03467 -10.00153 -9.79566 -8.60579 -0.44319 0.15155 0.79377 1.17180 1.35839 1.45014 1.51307 1.58111 1.67661 1.88217 1.95292 1.98978 2.06075 2.20688 2.58218 2.61403 3.11134 3.36135 3.57803 3.69235 3.78462 3.83290 3.99208 4.12162 4.26172 4.29304 4.36422 4.57743 4.63525 4.68939 4.71254 4.73508 4.75571 4.77783 4.83762 4.84997 4.87542 4.89142 4.98709 5.10830 5.14194 5.26049 5.51759 5.59016 5.61215 5.66147 5.77719 6.08625 6.42299 6.70081 6.74267 6.80460 7.14924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.475 4.475 2 Si 1.096 2.904 3 C -0.455 4.455 4 C -0.458 4.458 5 C -0.191 4.191 6 N -0.339 5.339 7 C 0.033 3.967 8 C -0.024 4.024 9 N -0.624 5.624 10 C 0.555 3.445 11 O -0.547 6.547 12 C -0.177 4.177 13 C -0.053 4.053 14 C -0.147 4.147 15 C -0.037 4.037 16 C -0.095 4.095 17 O -0.564 6.564 18 Si 0.984 3.016 19 H -0.265 1.265 20 H -0.260 1.260 21 H -0.245 1.245 22 C -0.136 4.136 23 C 0.157 3.843 24 O -0.496 6.496 25 C 0.022 3.978 26 N -0.318 5.318 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.045 0.955 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.132 0.868 38 H 0.222 0.778 39 H 0.425 0.575 40 H 0.170 0.830 41 H 0.150 0.850 42 H 0.101 0.899 43 H 0.400 0.600 44 H 0.141 0.859 45 H 0.408 0.592 46 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.865 -0.124 -8.159 11.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.579 4.579 2 Si 1.285 2.715 3 C -0.564 4.564 4 C -0.565 4.565 5 C -0.354 4.354 6 N -0.122 5.122 7 C -0.116 4.116 8 C -0.128 4.128 9 N -0.272 5.272 10 C 0.344 3.656 11 O -0.426 6.426 12 C -0.181 4.181 13 C -0.071 4.071 14 C -0.165 4.165 15 C -0.037 4.037 16 C -0.204 4.204 17 O -0.374 6.374 18 Si 0.806 3.194 19 H -0.189 1.189 20 H -0.184 1.184 21 H -0.169 1.169 22 C -0.155 4.155 23 C 0.111 3.889 24 O -0.309 6.309 25 C -0.163 4.163 26 N -0.143 5.143 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.120 0.880 37 H 0.151 0.849 38 H 0.239 0.761 39 H 0.265 0.735 40 H 0.188 0.812 41 H 0.167 0.833 42 H 0.119 0.881 43 H 0.251 0.749 44 H 0.159 0.841 45 H 0.269 0.731 46 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 7.599 1.586 -6.811 10.327 hybrid contribution -0.585 -1.444 -0.423 1.615 sum 7.013 0.141 -7.233 10.076 Atomic orbital electron populations 1.26516 1.24453 1.03029 1.03948 0.78245 0.63969 0.65825 0.63493 1.26142 1.07323 1.17894 1.05000 1.26208 1.07460 1.07670 1.15203 1.27425 1.06653 0.81750 1.19573 1.48286 1.14677 1.07695 1.41529 1.22541 1.00807 0.85094 1.03170 1.17783 0.98471 0.85826 1.10737 1.42485 1.24209 1.03775 1.56689 1.18291 0.83151 0.84935 0.79246 1.90704 1.27163 1.83595 1.41093 1.20263 0.99389 0.92200 1.06236 1.21447 0.94357 0.97865 0.93441 1.21194 0.99985 0.92739 1.02545 1.19707 0.93294 0.94910 0.95794 1.25002 1.12777 0.88848 0.93770 1.86468 1.94964 1.24322 1.31620 0.85203 0.74969 0.80961 0.78223 1.18917 1.18403 1.16908 1.21344 0.99161 0.95796 0.99170 1.18716 0.88117 0.91455 0.90639 1.84730 1.19485 1.90929 1.35767 1.24302 0.99805 0.92029 1.00140 1.77385 1.03321 1.12399 1.21173 0.91962 0.91230 0.93529 0.89609 0.90706 0.90996 0.92041 0.90953 0.89221 0.87996 0.84943 0.76120 0.73516 0.81250 0.83303 0.88082 0.74891 0.84086 0.73149 0.80102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 -0.75 8.65 113.37 0.98 0.23 16 2 Si 1.10 -7.50 12.79 68.60 0.88 -6.62 16 3 C -0.45 3.34 8.65 113.37 0.98 4.32 16 4 C -0.46 2.99 8.65 113.37 0.98 3.97 16 5 C -0.19 0.90 5.59 127.77 0.71 1.61 16 6 N -0.34 -0.90 3.01 -182.91 -0.55 -1.46 16 7 C 0.03 -0.02 11.44 83.50 0.96 0.93 16 8 C -0.02 -0.13 6.90 37.63 0.26 0.13 16 9 N -0.62 -0.92 5.42 -306.89 -1.66 -2.59 16 10 C 0.55 4.18 7.74 86.69 0.67 4.85 16 11 O -0.55 -8.29 12.31 16.84 0.21 -8.09 16 12 C -0.18 -0.70 5.89 -20.01 -0.12 -0.82 16 13 C -0.05 0.15 9.54 22.52 0.21 0.37 16 14 C -0.15 0.35 8.65 22.23 0.19 0.54 16 15 C -0.04 -0.01 5.43 -19.83 -0.11 -0.12 16 16 C -0.09 0.37 2.81 71.24 0.20 0.57 16 17 O -0.56 0.89 12.74 -148.98 -1.90 -1.00 16 18 Si 0.98 -5.29 25.05 68.60 1.72 -3.58 16 19 H -0.26 0.59 7.11 99.48 0.71 1.29 16 20 H -0.26 1.19 7.11 99.48 0.71 1.90 16 21 H -0.25 1.42 7.11 99.48 0.71 2.12 16 22 C -0.14 -0.47 9.53 22.34 0.21 -0.25 16 23 C 0.16 0.99 6.72 22.84 0.15 1.14 16 24 O -0.50 -4.29 11.58 -68.82 -0.80 -5.09 16 25 C 0.02 0.27 10.84 85.34 0.92 1.20 16 26 N -0.32 -3.62 12.56 -56.77 -0.71 -4.34 16 27 H 0.06 0.17 7.96 -2.39 -0.02 0.15 16 28 H 0.07 0.05 7.96 -2.39 -0.02 0.03 16 29 H 0.05 0.31 7.96 -2.39 -0.02 0.29 16 30 H 0.08 -0.81 7.96 -2.39 -0.02 -0.83 16 31 H 0.07 -0.48 7.96 -2.39 -0.02 -0.50 16 32 H 0.07 -0.47 7.96 -2.39 -0.02 -0.49 16 33 H 0.06 -0.24 7.96 -2.39 -0.02 -0.26 16 34 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 35 H 0.09 -0.89 7.96 -2.39 -0.02 -0.91 16 36 H 0.10 -0.36 7.96 -2.39 -0.02 -0.38 16 37 H 0.13 -1.49 7.96 -2.39 -0.02 -1.51 16 38 H 0.22 -2.45 8.06 -2.91 -0.02 -2.47 16 39 H 0.43 -3.09 6.85 -92.71 -0.64 -3.73 16 40 H 0.17 -1.90 6.40 -2.91 -0.02 -1.91 16 41 H 0.15 -0.99 4.85 -2.91 -0.01 -1.01 16 42 H 0.10 -0.81 7.96 -2.39 -0.02 -0.83 16 43 H 0.40 -4.24 8.74 -74.06 -0.65 -4.89 16 44 H 0.14 0.36 8.06 -2.91 -0.02 0.33 16 45 H 0.41 0.49 9.06 -74.05 -0.67 -0.18 16 46 H 0.18 2.92 5.91 -2.91 -0.02 2.90 16 Total: 0.00 -29.62 387.28 4.24 -25.38 By element: Atomic # 1 Polarization: -11.13 SS G_CDS: -0.16 Total: -11.29 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: 7.22 Total: 18.67 kcal Atomic # 7 Polarization: -5.45 SS G_CDS: -2.93 Total: -8.38 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: -2.49 Total: -14.18 kcal Atomic # 14 Polarization: -12.80 SS G_CDS: 2.60 Total: -10.20 kcal Total: -29.62 4.24 -25.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_13422076.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.771 kcal (2) G-P(sol) polarization free energy of solvation -29.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds