Wall clock time and date at job start Sun Mar 7 2021 10:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38500 * 119.84989 * 2 1 4 4 C 1.38112 * 120.38972 * 180.02562 * 3 2 1 5 5 C 1.50696 * 119.95458 * 179.97438 * 4 3 2 6 6 O 1.42899 * 109.47587 * 104.99965 * 5 4 3 7 7 Si 1.86300 * 109.47372 * 344.99538 * 5 4 3 8 8 H 1.48497 * 109.47036 * 60.00119 * 7 5 4 9 9 H 1.48499 * 109.47111 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46795 * 300.00450 * 7 5 4 11 11 C 1.38661 * 120.08569 * 359.74006 * 4 3 2 12 12 O 1.35652 * 120.15266 * 180.25575 * 11 4 3 13 13 C 1.40179 * 119.69822 * 0.53606 * 11 4 3 14 14 C 1.47527 * 120.19165 * 179.74582 * 13 11 4 15 15 O 1.21613 * 119.99886 * 359.72177 * 14 13 11 16 16 N 1.34777 * 119.99863 * 179.71878 * 14 13 11 17 17 C 1.40723 * 119.99858 * 179.72319 * 16 14 13 18 18 C 1.35761 * 126.08145 * 180.27871 * 17 16 14 19 19 N 1.35830 * 107.55738 * 179.97438 * 18 17 16 20 20 C 1.46498 * 126.05358 * 180.02562 * 19 18 17 21 21 Si 1.86300 * 109.47319 * 89.99631 * 20 19 18 22 22 C 1.86299 * 109.47034 * 60.00148 * 21 20 19 23 23 C 1.86302 * 109.47253 * 180.02562 * 21 20 19 24 24 C 1.86293 * 109.47255 * 299.99958 * 21 20 19 25 25 N 1.40063 * 107.89556 * 359.97438 * 19 18 17 26 26 C 1.30830 * 108.37427 * 359.74549 * 25 19 18 27 27 C 1.37838 * 119.85236 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.47149 * 269.97386 * 1 2 3 29 29 H 1.08997 * 109.47690 * 29.97852 * 1 2 3 30 30 H 1.09006 * 109.47583 * 149.97955 * 1 2 3 31 31 H 1.07993 * 119.80614 * 359.97438 * 3 2 1 32 32 H 1.09004 * 109.46955 * 224.99792 * 5 4 3 33 33 H 0.96698 * 114.00098 * 179.97438 * 6 5 4 34 34 H 0.96706 * 114.00074 * 270.28579 * 12 11 4 35 35 H 0.97001 * 120.00485 * 0.02562 * 16 14 13 36 36 H 1.07994 * 126.22276 * 359.94215 * 18 17 16 37 37 H 1.09000 * 109.47637 * 209.99985 * 20 19 18 38 38 H 1.09005 * 109.46885 * 329.99815 * 20 19 18 39 39 H 1.09004 * 109.47290 * 59.99884 * 22 21 20 40 40 H 1.09005 * 109.46890 * 179.97438 * 22 21 20 41 41 H 1.08994 * 109.47262 * 300.00199 * 22 21 20 42 42 H 1.08997 * 109.47235 * 59.99804 * 23 21 20 43 43 H 1.08996 * 109.47525 * 180.02562 * 23 21 20 44 44 H 1.09004 * 109.46793 * 299.99946 * 23 21 20 45 45 H 1.09003 * 109.47160 * 59.99731 * 24 21 20 46 46 H 1.09002 * 109.47541 * 179.97438 * 24 21 20 47 47 H 1.09005 * 109.47359 * 300.00067 * 24 21 20 48 48 H 1.07997 * 125.83621 * 180.25825 * 26 25 19 49 49 H 1.08008 * 120.04320 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1963 1.2013 0.0000 4 6 3.5773 1.2143 -0.0005 5 6 4.3174 2.5270 -0.0011 6 8 4.8557 2.7710 1.3000 7 14 3.1445 3.9011 -0.4557 8 1 2.0393 3.9564 0.5346 9 1 3.8740 5.1945 -0.4569 10 1 2.5852 3.6474 -1.8078 11 6 4.2837 0.0211 0.0044 12 8 5.6402 0.0323 0.0091 13 6 3.5897 -1.1968 -0.0015 14 6 4.3303 -2.4728 -0.0021 15 8 5.5465 -2.4699 -0.0025 16 7 3.6591 -3.6415 -0.0020 17 6 4.3656 -4.8585 -0.0084 18 6 3.8180 -6.1008 -0.0144 19 7 4.8378 -6.9981 -0.0199 20 6 4.7028 -8.4568 -0.0279 21 14 4.6445 -9.0654 -1.7878 22 6 6.2160 -8.5825 -2.6642 23 6 4.4720 -10.9204 -1.7979 24 6 3.1867 -8.3021 -2.6610 25 7 6.0414 -6.2817 -0.0177 26 6 5.7607 -5.0038 -0.0167 27 6 2.1930 -1.1955 -0.0005 28 1 -0.3633 -0.0005 1.0276 29 1 -0.3634 0.8901 -0.5135 30 1 -0.3634 -0.8898 -0.5142 31 1 1.6507 2.1332 -0.0004 32 1 5.1286 2.4864 -0.7281 33 1 5.3467 3.6009 1.3732 34 1 6.0365 0.0382 -0.8730 35 1 2.6891 -3.6438 -0.0020 36 1 2.7635 -6.3334 -0.0143 37 1 5.5557 -8.9035 0.4830 38 1 3.7833 -8.7393 0.4848 39 1 7.0690 -9.0291 -2.1532 40 1 6.1821 -8.9390 -3.6937 41 1 6.3165 -7.4972 -2.6582 42 1 3.5525 -11.2026 -1.2853 43 1 4.4384 -11.2766 -2.8275 44 1 5.3248 -11.3674 -1.2869 45 1 3.2871 -7.2167 -2.6550 46 1 3.1529 -8.6578 -3.6908 47 1 2.2672 -8.5846 -2.1482 48 1 6.4802 -4.1984 -0.0189 49 1 1.6513 -2.1299 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_13422088.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:25:21 Heat of formation + Delta-G solvation = -37.535306 kcal Electronic energy + Delta-G solvation = -30172.143387 eV Core-core repulsion = 26032.130287 eV Total energy + Delta-G solvation = -4140.013100 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 363.157 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.40187 -41.53838 -39.89804 -38.06256 -37.58973 -35.88248 -33.85835 -33.16775 -32.80982 -30.32591 -29.50934 -28.37309 -28.32678 -27.55462 -27.09422 -26.74640 -25.14730 -22.79663 -22.16041 -21.69581 -20.88371 -19.58699 -18.53022 -18.51078 -18.09624 -17.40641 -16.81204 -16.53669 -16.49397 -16.00620 -15.82805 -15.61227 -15.18744 -14.97816 -14.86738 -14.53947 -14.41001 -14.18718 -14.14869 -13.99742 -13.85430 -13.82054 -13.76870 -13.41422 -13.20542 -13.13328 -13.02641 -13.01613 -12.98057 -12.67661 -12.40022 -12.16479 -12.10308 -11.79693 -11.75899 -11.66657 -11.36522 -10.87498 -10.84242 -10.79471 -10.29499 -10.14934 -10.02206 -9.51942 -8.60846 -0.39500 0.07578 0.79338 1.11782 1.35750 1.44162 1.45946 1.50733 1.67645 1.86954 1.88365 1.99469 2.04789 2.20711 2.58239 2.59923 3.15495 3.38401 3.51520 3.68162 3.76150 3.88789 3.97975 4.09163 4.16093 4.26130 4.33076 4.50329 4.58565 4.63274 4.68952 4.71163 4.73410 4.75618 4.80815 4.83989 4.85077 4.87706 4.87958 4.89432 4.97755 5.09779 5.17949 5.22456 5.40241 5.51814 5.61339 5.66094 5.66536 5.77521 6.08477 6.41780 6.69810 6.74632 6.81692 7.14603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.096 4.096 3 C -0.089 4.089 4 C -0.124 4.124 5 C -0.085 4.085 6 O -0.563 6.563 7 Si 0.984 3.016 8 H -0.258 1.258 9 H -0.256 1.256 10 H -0.249 1.249 11 C 0.170 3.830 12 O -0.487 6.487 13 C -0.175 4.175 14 C 0.555 3.445 15 O -0.547 6.547 16 N -0.624 5.624 17 C -0.023 4.023 18 C 0.033 3.967 19 N -0.339 5.339 20 C -0.191 4.191 21 Si 1.096 2.904 22 C -0.475 4.475 23 C -0.455 4.455 24 C -0.458 4.458 25 N -0.318 5.318 26 C 0.022 3.978 27 C -0.060 4.060 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.143 0.857 32 H 0.084 0.916 33 H 0.395 0.605 34 H 0.403 0.597 35 H 0.425 0.575 36 H 0.223 0.777 37 H 0.101 0.899 38 H 0.133 0.867 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.045 0.955 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.060 0.940 46 H 0.071 0.929 47 H 0.089 0.911 48 H 0.182 0.818 49 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.254 -1.617 -3.298 10.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.096 4.096 3 C -0.107 4.107 4 C -0.125 4.125 5 C -0.193 4.193 6 O -0.371 6.371 7 Si 0.807 3.193 8 H -0.183 1.183 9 H -0.180 1.180 10 H -0.173 1.173 11 C 0.124 3.876 12 O -0.299 6.299 13 C -0.179 4.179 14 C 0.344 3.656 15 O -0.425 6.425 16 N -0.271 5.271 17 C -0.128 4.128 18 C -0.116 4.116 19 N -0.122 5.122 20 C -0.354 4.354 21 Si 1.285 2.715 22 C -0.579 4.579 23 C -0.563 4.563 24 C -0.565 4.565 25 N -0.142 5.142 26 C -0.163 4.163 27 C -0.078 4.078 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.161 0.839 32 H 0.102 0.898 33 H 0.245 0.755 34 H 0.262 0.738 35 H 0.264 0.736 36 H 0.239 0.761 37 H 0.120 0.880 38 H 0.151 0.849 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.064 0.936 42 H 0.104 0.896 43 H 0.093 0.907 44 H 0.090 0.910 45 H 0.079 0.921 46 H 0.091 0.909 47 H 0.108 0.892 48 H 0.198 0.802 49 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -9.352 -2.490 -2.751 10.061 hybrid contribution 0.519 1.084 -0.261 1.230 sum -8.832 -1.406 -3.011 9.437 Atomic orbital electron populations 1.20923 0.87922 1.04731 1.03777 1.20097 0.98196 0.91660 0.99623 1.21389 0.92592 0.99758 0.96996 1.19868 0.94068 0.94006 1.04530 1.24838 1.04235 1.01093 0.89170 1.86512 1.74847 1.46570 1.29196 0.85233 0.78109 0.75991 0.80014 1.18257 1.18041 1.17268 1.18457 0.83700 0.90529 0.94961 1.84768 1.14949 1.96020 1.34163 1.20255 0.94989 0.91987 1.10670 1.18269 0.86971 0.83772 0.76559 1.90703 1.14734 1.87231 1.49820 1.42475 1.10372 1.02004 1.72275 1.17783 0.91333 0.86363 1.17315 1.22536 0.96562 0.86893 1.05600 1.48286 1.02754 1.06544 1.54580 1.27430 1.08209 0.75969 1.23810 0.78242 0.65137 0.66231 0.61895 1.26517 1.18531 1.04299 1.08600 1.26139 1.05583 1.19379 1.05236 1.26208 1.14998 1.06766 1.08567 1.77382 1.06780 1.04737 1.25350 1.24297 0.95931 0.94126 1.01954 1.21454 0.90939 0.99885 0.95566 0.89941 0.90455 0.89112 0.83928 0.89765 0.75495 0.73780 0.73565 0.76102 0.88002 0.84929 0.91971 0.91224 0.93551 0.89592 0.90696 0.91003 0.92071 0.90944 0.89204 0.80161 0.81672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.94 10.00 71.23 0.71 1.66 16 2 C -0.10 0.22 5.87 -19.90 -0.12 0.10 16 3 C -0.09 -0.08 8.30 22.30 0.19 0.11 16 4 C -0.12 -0.55 5.30 -19.79 -0.10 -0.65 16 5 C -0.08 -0.11 2.36 71.23 0.17 0.06 16 6 O -0.56 -2.46 12.86 -148.98 -1.92 -4.37 16 7 Si 0.98 -1.91 25.49 68.60 1.75 -0.16 16 8 H -0.26 0.07 6.73 99.48 0.67 0.74 16 9 H -0.26 0.42 7.11 99.48 0.71 1.12 16 10 H -0.25 0.46 7.11 99.48 0.71 1.17 16 11 C 0.17 1.30 6.69 22.84 0.15 1.45 16 12 O -0.49 -4.81 10.91 -68.75 -0.75 -5.56 16 13 C -0.18 -0.87 5.89 -20.01 -0.12 -0.99 16 14 C 0.56 4.62 7.74 86.69 0.67 5.29 16 15 O -0.55 -8.69 12.31 16.84 0.21 -8.48 16 16 N -0.62 -1.26 5.42 -306.89 -1.66 -2.93 16 17 C -0.02 -0.14 6.90 37.63 0.26 0.12 16 18 C 0.03 -0.02 11.44 83.50 0.96 0.94 16 19 N -0.34 -0.96 3.01 -182.91 -0.55 -1.51 16 20 C -0.19 0.88 5.59 127.77 0.71 1.60 16 21 Si 1.10 -7.45 12.79 68.60 0.88 -6.58 16 22 C -0.48 -0.79 8.65 113.37 0.98 0.19 16 23 C -0.45 3.34 8.65 113.37 0.98 4.32 16 24 C -0.46 2.97 8.65 113.37 0.98 3.95 16 25 N -0.32 -3.70 12.56 -56.76 -0.71 -4.41 16 26 C 0.02 0.28 10.84 85.34 0.92 1.20 16 27 C -0.06 0.13 9.18 22.52 0.21 0.34 16 28 H 0.08 -0.71 8.14 -2.39 -0.02 -0.73 16 29 H 0.08 -0.68 8.08 -2.39 -0.02 -0.70 16 30 H 0.09 -1.03 8.08 -2.38 -0.02 -1.05 16 31 H 0.14 -0.31 4.86 -2.91 -0.01 -0.33 16 32 H 0.08 -0.15 7.83 -2.39 -0.02 -0.16 16 33 H 0.40 -1.91 8.74 -74.06 -0.65 -2.56 16 34 H 0.40 1.01 9.06 -74.05 -0.67 0.33 16 35 H 0.42 -2.83 6.86 -92.71 -0.64 -3.46 16 36 H 0.22 -2.41 8.06 -2.91 -0.02 -2.44 16 37 H 0.10 -0.35 7.96 -2.39 -0.02 -0.37 16 38 H 0.13 -1.48 7.96 -2.38 -0.02 -1.50 16 39 H 0.06 0.18 7.96 -2.38 -0.02 0.16 16 40 H 0.07 0.05 7.96 -2.38 -0.02 0.03 16 41 H 0.05 0.31 7.96 -2.39 -0.02 0.30 16 42 H 0.09 -0.82 7.96 -2.39 -0.02 -0.84 16 43 H 0.07 -0.48 7.96 -2.39 -0.02 -0.50 16 44 H 0.07 -0.47 7.96 -2.38 -0.02 -0.49 16 45 H 0.06 -0.24 7.96 -2.39 -0.02 -0.26 16 46 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 47 H 0.09 -0.89 7.96 -2.38 -0.02 -0.91 16 48 H 0.18 3.00 5.91 -2.91 -0.02 2.99 16 49 H 0.17 -1.68 6.40 -2.91 -0.02 -1.70 16 Total: 0.00 -30.47 407.98 4.56 -25.91 By element: Atomic # 1 Polarization: -11.34 SS G_CDS: -0.23 Total: -11.57 kcal Atomic # 6 Polarization: 12.11 SS G_CDS: 7.55 Total: 19.67 kcal Atomic # 7 Polarization: -5.92 SS G_CDS: -2.93 Total: -8.85 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -2.46 Total: -18.42 kcal Atomic # 14 Polarization: -9.36 SS G_CDS: 2.63 Total: -6.74 kcal Total: -30.47 4.56 -25.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_13422088.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.624 kcal (2) G-P(sol) polarization free energy of solvation -30.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds