Wall clock time and date at job start Sun Mar 7 2021 10:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.39068 * 110.99807 * 236.04684 * 2 1 3 5 5 C 1.39194 * 119.92823 * 59.72577 * 4 2 1 6 6 C 1.37634 * 120.06668 * 179.76305 * 5 4 2 7 7 C 1.39779 * 119.92818 * 0.51357 * 6 5 4 8 8 C 1.47509 * 120.06814 * 179.76539 * 7 6 5 9 9 O 1.21623 * 119.99950 * 179.97438 * 8 7 6 10 10 N 1.34777 * 119.99922 * 359.97438 * 8 7 6 11 11 C 1.40723 * 120.00017 * 179.97438 * 10 8 7 12 12 C 1.35762 * 126.08052 * 179.97438 * 11 10 8 13 13 N 1.35831 * 107.55745 * 180.02562 * 12 11 10 14 14 C 1.46504 * 126.05009 * 180.02562 * 13 12 11 15 15 Si 1.86304 * 109.47119 * 90.00147 * 14 13 12 16 16 C 1.86297 * 109.47164 * 59.99528 * 15 14 13 17 17 C 1.86299 * 109.47002 * 179.97438 * 15 14 13 18 18 C 1.86299 * 109.46717 * 299.99663 * 15 14 13 19 19 N 1.40060 * 107.89481 * 0.02562 * 13 12 11 20 20 C 1.30834 * 108.37091 * 359.71621 * 19 13 12 21 21 C 1.39811 * 119.86237 * 359.74216 * 7 6 5 22 22 C 1.37590 * 119.93058 * 359.97438 * 21 7 6 23 23 C 1.50699 * 119.96605 * 180.02562 * 22 21 7 24 24 O 1.42898 * 109.47127 * 104.98187 * 23 22 21 25 25 Si 1.86306 * 109.47026 * 344.98282 * 23 22 21 26 26 H 1.48498 * 109.47341 * 59.99818 * 25 23 22 27 27 H 1.48504 * 109.46980 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.47151 * 299.99691 * 25 23 22 29 29 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 30 30 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 31 31 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 32 32 H 1.09006 * 109.46770 * 56.04400 * 3 2 1 33 33 H 1.09001 * 109.47456 * 176.04615 * 3 2 1 34 34 H 1.09000 * 109.46814 * 296.04921 * 3 2 1 35 35 H 1.07997 * 119.96280 * 0.02562 * 5 4 2 36 36 H 1.08003 * 120.03527 * 180.25629 * 6 5 4 37 37 H 0.97007 * 120.00386 * 0.02562 * 10 8 7 38 38 H 1.08006 * 126.22610 * 0.02562 * 12 11 10 39 39 H 1.09000 * 109.46653 * 209.99627 * 14 13 12 40 40 H 1.08998 * 109.47202 * 329.99846 * 14 13 12 41 41 H 1.09001 * 109.46931 * 60.00344 * 16 15 14 42 42 H 1.09003 * 109.47074 * 179.97438 * 16 15 14 43 43 H 1.08991 * 109.47262 * 300.00069 * 16 15 14 44 44 H 1.09005 * 109.47333 * 59.99863 * 17 15 14 45 45 H 1.08996 * 109.47012 * 179.97438 * 17 15 14 46 46 H 1.09001 * 109.47439 * 299.99868 * 17 15 14 47 47 H 1.08991 * 109.47308 * 60.00176 * 18 15 14 48 48 H 1.09003 * 109.46629 * 180.02562 * 18 15 14 49 49 H 1.08999 * 109.46947 * 299.99441 * 18 15 14 50 50 H 1.08008 * 125.82913 * 180.29413 * 20 19 13 51 51 H 1.08004 * 120.03800 * 179.97438 * 21 7 6 52 52 H 1.09002 * 109.47283 * 224.98076 * 23 22 21 53 53 H 0.96698 * 114.00473 * 60.00377 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9673 -0.7251 -1.0770 5 6 1.6484 -0.3448 -2.3774 6 6 2.1440 -1.0575 -3.4455 7 6 2.9596 -2.1706 -3.2229 8 6 3.4882 -2.9398 -4.3652 9 8 4.1981 -3.9078 -4.1702 10 7 3.1845 -2.5697 -5.6251 11 6 3.6892 -3.3031 -6.7149 12 6 3.4628 -3.0421 -8.0278 13 7 4.1261 -3.9802 -8.7524 14 6 4.1574 -4.0777 -10.2139 15 14 5.5904 -3.0855 -10.8719 16 6 7.1820 -3.7531 -10.1707 17 6 5.6306 -3.2100 -12.7302 18 6 5.3918 -1.3017 -10.3725 19 7 4.7748 -4.8379 -7.8550 20 6 4.5193 -4.4311 -6.6380 21 6 3.2737 -2.5532 -1.9154 22 6 2.7799 -1.8331 -0.8520 23 6 3.1184 -2.2445 0.5577 24 8 4.0884 -1.3441 1.0967 25 14 3.8125 -3.9734 0.5504 26 1 5.0400 -4.0106 -0.2844 27 1 4.1466 -4.3785 1.9395 28 1 2.8045 -4.9091 -0.0097 29 1 -0.3634 -1.0252 0.0708 30 1 -0.3633 0.4513 -0.9233 31 1 -0.3633 0.5740 0.8525 32 1 1.5899 1.9163 0.8525 33 1 3.0829 1.3431 0.0709 34 1 1.7045 1.8723 -0.9233 35 1 1.0149 0.5130 -2.5485 36 1 1.8996 -0.7594 -4.4544 37 1 2.6185 -1.7973 -5.7808 38 1 2.8642 -2.2352 -8.4242 39 1 4.2735 -5.1214 -10.5059 40 1 3.2261 -3.6870 -10.6241 41 1 7.2981 -4.7968 -10.4628 42 1 8.0204 -3.1729 -10.5560 43 1 7.1587 -3.6806 -9.0834 44 1 4.6993 -2.8196 -13.1409 45 1 6.4687 -2.6292 -13.1152 46 1 5.7469 -4.2538 -13.0221 47 1 5.3685 -1.2291 -9.2853 48 1 6.2300 -0.7211 -10.7579 49 1 4.4606 -0.9110 -10.7829 50 1 4.8836 -4.8873 -5.7293 51 1 3.9033 -3.4131 -1.7401 52 1 2.2174 -2.2172 1.1705 53 1 3.7944 -0.4236 1.1310 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_13422196.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:32:25 Heat of formation + Delta-G solvation = 20.907190 kcal Electronic energy + Delta-G solvation = -32055.847277 eV Core-core repulsion = 27860.549477 eV Total energy + Delta-G solvation = -4195.297801 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 376.184 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.42556 -41.58361 -40.33248 -37.67830 -37.32938 -36.06010 -33.77710 -32.84510 -31.52632 -30.26670 -29.51832 -28.51255 -28.38528 -28.34040 -27.21360 -26.90767 -25.90202 -23.70113 -23.04074 -22.46461 -21.95937 -20.78392 -19.13839 -18.54810 -17.85172 -17.73022 -17.22680 -16.66942 -16.54343 -16.45839 -16.06528 -15.85853 -15.76212 -15.22779 -15.21216 -15.11001 -14.70442 -14.34481 -14.19612 -14.16266 -14.05394 -13.91457 -13.84436 -13.82665 -13.50600 -13.42333 -13.21662 -13.15328 -13.12211 -13.02706 -13.00098 -12.68664 -12.59240 -12.32893 -12.21689 -11.90150 -11.77990 -11.39795 -11.36081 -11.19415 -10.96496 -10.85472 -10.80984 -10.10484 -10.05103 -9.86666 -9.56416 -8.64457 -0.45137 0.14383 0.77007 1.15817 1.33209 1.38462 1.43979 1.47129 1.66168 1.86691 1.90144 1.96169 2.02344 2.18026 2.57223 2.64655 2.76913 3.49645 3.56544 3.69829 3.74236 3.92140 3.96783 4.05766 4.13676 4.21959 4.26213 4.42981 4.46427 4.49387 4.55199 4.65592 4.67486 4.68866 4.69368 4.71581 4.74260 4.79769 4.82790 4.83961 4.86863 4.88335 4.98346 5.03800 5.04661 5.07838 5.13294 5.22138 5.50526 5.52221 5.60142 5.65349 5.73890 5.82985 6.06275 6.23803 6.37391 6.66930 6.69878 7.07521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.525 5.525 3 C 0.022 3.978 4 C 0.133 3.867 5 C -0.148 4.148 6 C -0.057 4.057 7 C -0.142 4.142 8 C 0.554 3.446 9 O -0.566 6.566 10 N -0.619 5.619 11 C -0.026 4.026 12 C 0.037 3.963 13 N -0.339 5.339 14 C -0.190 4.190 15 Si 1.095 2.905 16 C -0.477 4.477 17 C -0.454 4.454 18 C -0.458 4.458 19 N -0.318 5.318 20 C 0.021 3.979 21 C -0.076 4.076 22 C -0.110 4.110 23 C -0.064 4.064 24 O -0.549 6.549 25 Si 1.010 2.990 26 H -0.278 1.278 27 H -0.263 1.263 28 H -0.249 1.249 29 H 0.067 0.933 30 H 0.045 0.955 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.043 0.957 35 H 0.157 0.843 36 H 0.165 0.835 37 H 0.427 0.573 38 H 0.224 0.776 39 H 0.102 0.898 40 H 0.134 0.866 41 H 0.061 0.939 42 H 0.068 0.932 43 H 0.044 0.956 44 H 0.086 0.914 45 H 0.074 0.926 46 H 0.071 0.929 47 H 0.060 0.940 48 H 0.071 0.929 49 H 0.090 0.910 50 H 0.181 0.819 51 H 0.121 0.879 52 H 0.098 0.902 53 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.123 9.703 -5.000 13.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.247 5.247 3 C -0.124 4.124 4 C 0.038 3.962 5 C -0.168 4.168 6 C -0.076 4.076 7 C -0.145 4.145 8 C 0.343 3.657 9 O -0.446 6.446 10 N -0.265 5.265 11 C -0.131 4.131 12 C -0.113 4.113 13 N -0.121 5.121 14 C -0.353 4.353 15 Si 1.284 2.716 16 C -0.581 4.581 17 C -0.563 4.563 18 C -0.566 4.566 19 N -0.142 5.142 20 C -0.164 4.164 21 C -0.096 4.096 22 C -0.112 4.112 23 C -0.175 4.175 24 O -0.356 6.356 25 Si 0.834 3.166 26 H -0.203 1.203 27 H -0.188 1.188 28 H -0.172 1.172 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.090 0.910 34 H 0.062 0.938 35 H 0.175 0.825 36 H 0.183 0.817 37 H 0.267 0.733 38 H 0.241 0.759 39 H 0.121 0.879 40 H 0.152 0.848 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.064 0.936 44 H 0.105 0.895 45 H 0.093 0.907 46 H 0.090 0.910 47 H 0.079 0.921 48 H 0.090 0.910 49 H 0.109 0.891 50 H 0.198 0.802 51 H 0.139 0.861 52 H 0.116 0.884 53 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -6.249 6.535 -5.165 10.412 hybrid contribution -0.932 1.636 0.048 1.883 sum -7.180 8.170 -5.116 12.020 Atomic orbital electron populations 1.22551 0.84139 1.03096 1.02395 1.59450 1.09958 1.15245 1.40032 1.22603 1.01111 0.86146 1.02511 1.18928 0.94040 0.93082 0.90103 1.21864 1.01501 1.01469 0.91989 1.21480 0.93248 0.91733 1.01141 1.19672 1.03619 0.99160 0.92084 1.18468 0.80100 0.83862 0.83233 1.90694 1.39130 1.29358 1.85449 1.42434 1.50319 1.31239 1.02555 1.17778 1.07978 0.99508 0.87805 1.22561 1.01446 0.98077 0.89182 1.48307 1.36661 1.20661 1.06479 1.27416 1.19110 1.13053 0.75766 0.78261 0.62307 0.65206 0.65827 1.26534 1.19183 1.06561 1.05772 1.26135 1.05637 1.05121 1.19419 1.26209 1.05884 1.19179 1.05293 1.77393 1.20808 1.16837 0.99184 1.24303 0.99302 0.96726 0.96099 1.21165 0.97343 0.99105 0.91944 1.20152 0.98903 0.96303 0.95825 1.24923 0.97506 1.03963 0.91066 1.86671 1.42046 1.22047 1.84869 0.84515 0.79355 0.73264 0.79464 1.20341 1.18775 1.17205 0.91453 0.93675 0.89385 0.89170 0.91027 0.93832 0.82532 0.81734 0.73265 0.75932 0.87924 0.84760 0.91953 0.91280 0.93625 0.89533 0.90735 0.90974 0.92093 0.90995 0.89119 0.80237 0.86148 0.88412 0.77302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.16 9.33 127.69 1.19 1.03 16 2 N -0.53 2.27 3.71 -745.08 -2.76 -0.49 16 3 C 0.02 -0.16 9.10 127.69 1.16 1.00 16 4 C 0.13 -0.18 4.67 38.46 0.18 0.00 16 5 C -0.15 0.75 8.53 22.36 0.19 0.94 16 6 C -0.06 0.26 9.53 22.50 0.21 0.47 16 7 C -0.14 -0.50 5.88 -20.08 -0.12 -0.62 16 8 C 0.55 4.21 7.73 86.69 0.67 4.88 16 9 O -0.57 -9.27 13.49 -4.10 -0.06 -9.32 16 10 N -0.62 -0.60 5.42 -306.90 -1.66 -2.26 16 11 C -0.03 -0.13 6.90 37.63 0.26 0.13 16 12 C 0.04 -0.05 11.44 83.50 0.96 0.91 16 13 N -0.34 -0.78 3.01 -182.90 -0.55 -1.33 16 14 C -0.19 0.97 5.59 127.77 0.71 1.69 16 15 Si 1.09 -7.56 12.79 68.60 0.88 -6.68 16 16 C -0.48 -0.90 8.65 113.37 0.98 0.08 16 17 C -0.45 3.40 8.65 113.37 0.98 4.38 16 18 C -0.46 3.00 8.65 113.37 0.98 3.98 16 19 N -0.32 -3.59 12.56 -56.76 -0.71 -4.31 16 20 C 0.02 0.26 10.84 85.33 0.92 1.18 16 21 C -0.08 -0.53 8.19 22.50 0.18 -0.34 16 22 C -0.11 -0.38 5.28 -19.78 -0.10 -0.48 16 23 C -0.06 -0.23 2.30 71.24 0.16 -0.07 16 24 O -0.55 -2.71 12.65 -148.98 -1.89 -4.59 16 25 Si 1.01 6.97 25.74 68.60 1.77 8.74 16 26 H -0.28 -3.22 6.73 99.48 0.67 -2.55 16 27 H -0.26 -2.10 7.11 99.48 0.71 -1.39 16 28 H -0.25 -1.65 7.11 99.48 0.71 -0.95 16 29 H 0.07 -0.35 8.14 -2.39 -0.02 -0.37 16 30 H 0.04 -0.39 7.08 -2.39 -0.02 -0.41 16 31 H 0.09 -0.74 8.12 -2.38 -0.02 -0.76 16 32 H 0.09 -0.82 8.12 -2.38 -0.02 -0.84 16 33 H 0.07 -0.47 7.41 -2.39 -0.02 -0.49 16 34 H 0.04 -0.38 7.33 -2.39 -0.02 -0.39 16 35 H 0.16 -1.57 6.98 -2.91 -0.02 -1.59 16 36 H 0.17 -2.06 6.39 -2.91 -0.02 -2.08 16 37 H 0.43 -3.52 6.84 -92.70 -0.63 -4.15 16 38 H 0.22 -2.65 8.06 -2.91 -0.02 -2.68 16 39 H 0.10 -0.41 7.96 -2.39 -0.02 -0.42 16 40 H 0.13 -1.60 7.96 -2.39 -0.02 -1.62 16 41 H 0.06 0.19 7.96 -2.39 -0.02 0.17 16 42 H 0.07 0.07 7.96 -2.39 -0.02 0.05 16 43 H 0.04 0.33 7.96 -2.39 -0.02 0.31 16 44 H 0.09 -0.85 7.96 -2.38 -0.02 -0.87 16 45 H 0.07 -0.48 7.96 -2.39 -0.02 -0.50 16 46 H 0.07 -0.48 7.96 -2.39 -0.02 -0.50 16 47 H 0.06 -0.24 7.96 -2.39 -0.02 -0.26 16 48 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 49 H 0.09 -0.92 7.96 -2.39 -0.02 -0.94 16 50 H 0.18 2.97 5.91 -2.91 -0.02 2.95 16 51 H 0.12 1.30 4.46 -2.91 -0.01 1.29 16 52 H 0.10 0.05 7.77 -2.39 -0.02 0.04 16 53 H 0.38 -0.14 7.48 -74.06 -0.55 -0.69 16 Total: 0.00 -26.20 429.28 5.01 -21.19 By element: Atomic # 1 Polarization: -20.53 SS G_CDS: 0.46 Total: -20.07 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: 9.53 Total: 19.14 kcal Atomic # 7 Polarization: -2.71 SS G_CDS: -5.69 Total: -8.40 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: -1.94 Total: -13.92 kcal Atomic # 14 Polarization: -0.59 SS G_CDS: 2.64 Total: 2.05 kcal Total: -26.20 5.01 -21.19 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_13422196.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.099 kcal (2) G-P(sol) polarization free energy of solvation -26.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds