Wall clock time and date at job start Sun Mar 7 2021 10:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86301 * 109.47203 * 2 1 4 4 C 1.86294 * 109.47405 * 239.99893 * 2 1 3 5 5 C 1.86304 * 109.47350 * 119.99872 * 2 1 3 6 6 N 1.46498 * 109.46809 * 59.99851 * 5 2 1 7 7 C 1.35837 * 126.05307 * 90.00590 * 6 5 2 8 8 C 1.35756 * 107.55852 * 179.97438 * 7 6 5 9 9 N 1.40760 * 126.07833 * 180.02562 * 8 7 6 10 10 C 1.34773 * 119.99697 * 179.97438 * 9 8 7 11 11 O 1.21678 * 120.00345 * 359.97438 * 10 9 8 12 12 C 1.47052 * 119.99879 * 179.97438 * 10 9 8 13 13 C 1.36217 * 123.49508 * 179.97438 * 12 10 9 14 14 Cl 1.73598 * 124.60115 * 0.02911 * 13 12 10 15 15 S 1.70439 * 110.79132 * 180.02562 * 13 12 10 16 16 C 1.75489 * 92.46904 * 0.02562 * 15 13 12 17 17 C 1.50701 * 124.68912 * 179.97438 * 16 15 13 18 18 O 1.42903 * 109.46878 * 245.02372 * 17 16 15 19 19 Si 1.86300 * 109.46948 * 5.02590 * 17 16 15 20 20 H 1.48503 * 109.46942 * 299.99736 * 19 17 16 21 21 H 1.48503 * 109.47262 * 60.00072 * 19 17 16 22 22 H 1.48500 * 109.46912 * 180.02562 * 19 17 16 23 23 C 1.32698 * 110.62754 * 0.22745 * 16 15 13 24 24 C 1.40253 * 107.84329 * 0.25504 * 8 7 6 25 25 N 1.30832 * 108.33494 * 359.56247 * 24 8 7 26 26 H 1.09001 * 109.46929 * 300.00292 * 1 2 3 27 27 H 1.09004 * 109.47238 * 59.99893 * 1 2 3 28 28 H 1.08994 * 109.47023 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47499 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47186 * 300.00472 * 3 2 1 31 31 H 1.09009 * 109.47192 * 60.00271 * 3 2 1 32 32 H 1.08993 * 109.47413 * 300.00215 * 4 2 1 33 33 H 1.09004 * 109.46748 * 59.99913 * 4 2 1 34 34 H 1.09001 * 109.47178 * 179.97438 * 4 2 1 35 35 H 1.09000 * 109.46877 * 300.00590 * 5 2 1 36 36 H 1.09001 * 109.47281 * 180.02562 * 5 2 1 37 37 H 1.08000 * 126.22031 * 359.97320 * 7 6 5 38 38 H 0.96998 * 120.00058 * 359.97438 * 9 8 7 39 39 H 1.09001 * 109.46927 * 125.02307 * 17 16 15 40 40 H 0.96700 * 113.99509 * 179.97438 * 18 17 16 41 41 H 1.08003 * 123.45680 * 179.77070 * 23 16 15 42 42 H 1.07995 * 125.82934 * 179.69857 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5210 5 6 2.4841 -0.8782 1.5212 6 7 1.9957 -2.2594 1.5212 7 6 2.6259 -3.3302 0.9721 8 6 1.8454 -4.4197 1.1879 9 7 2.1296 -5.7368 0.7806 10 6 1.2638 -6.7307 1.0617 11 8 0.2367 -6.4896 1.6680 12 6 1.5604 -8.1065 0.6357 13 6 0.7374 -9.1637 0.8820 14 17 -0.7755 -9.0592 1.7269 15 16 1.3947 -10.6027 0.2479 16 6 2.8140 -9.7733 -0.3663 17 6 3.9430 -10.4405 -1.1088 18 8 5.1404 -10.3524 -0.3338 19 14 3.5219 -12.2317 -1.3999 20 1 3.3181 -12.9107 -0.0950 21 1 2.2776 -12.3232 -2.2052 22 1 4.6347 -12.8893 -2.1310 23 6 2.7584 -8.4783 -0.0819 24 6 0.7029 -3.9989 1.8842 25 7 0.7966 -2.7099 2.0879 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.5740 1.7565 0.0005 30 1 2.1206 2.2703 -0.8899 31 1 2.1207 2.2703 0.8901 32 1 2.1207 -1.9058 -1.5211 33 1 2.1207 -0.3644 -2.4110 34 1 3.5740 -0.8778 -1.5212 35 1 2.1206 -0.3644 2.4111 36 1 3.5741 -0.8778 1.5214 37 1 3.5753 -3.3171 0.4575 38 1 2.9485 -5.9291 0.2976 39 1 4.0926 -9.9421 -2.0666 40 1 5.9102 -10.7626 -0.7514 41 1 3.5280 -7.7739 -0.3608 42 1 -0.1135 -4.6312 2.2003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_13431040.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:33:01 Heat of formation + Delta-G solvation = 10.995974 kcal Electronic energy + Delta-G solvation = -26249.251499 eV Core-core repulsion = 22314.915138 eV Total energy + Delta-G solvation = -3934.336361 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 373.060 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.33495 -40.81961 -38.78139 -37.99382 -37.02216 -35.90334 -33.65407 -31.84180 -30.48436 -29.51334 -28.36709 -28.32474 -27.37635 -26.79905 -25.54027 -22.86884 -21.98203 -21.66713 -20.44876 -19.16798 -18.61799 -18.42662 -17.52960 -16.87423 -16.65111 -16.45528 -16.02100 -15.83692 -15.35159 -15.06961 -14.78089 -14.61422 -14.41305 -14.31742 -14.16939 -14.13743 -13.94809 -13.80855 -13.79105 -13.40317 -13.20121 -13.12320 -13.00733 -12.96415 -12.57833 -12.44768 -12.24266 -12.15447 -12.02230 -11.94395 -11.73787 -11.34932 -10.90067 -10.83566 -10.78645 -10.38155 -10.01075 -9.88940 -9.76169 -8.58549 -0.67576 -0.26166 0.43037 0.61547 0.89551 0.98748 1.10604 1.38295 1.43470 1.46984 1.67845 1.69643 1.89373 1.91822 2.04233 2.25754 2.36976 2.59378 3.24666 3.63711 3.78400 3.84476 3.91510 4.03836 4.30084 4.35157 4.50007 4.65716 4.70621 4.72172 4.74751 4.76627 4.79050 4.84859 4.86323 4.88383 4.90270 4.97256 5.11186 5.52413 5.62323 5.67088 5.79068 6.10318 6.42127 6.71673 6.83640 7.13420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.476 4.476 2 Si 1.094 2.906 3 C -0.455 4.455 4 C -0.457 4.457 5 C -0.190 4.190 6 N -0.340 5.340 7 C 0.035 3.965 8 C -0.022 4.022 9 N -0.618 5.618 10 C 0.570 3.430 11 O -0.545 6.545 12 C -0.158 4.158 13 C -0.133 4.133 14 Cl 0.006 6.994 15 S 0.227 5.773 16 C -0.188 4.188 17 C -0.028 4.028 18 O -0.555 6.555 19 Si 0.887 3.113 20 H -0.255 1.255 21 H -0.241 1.241 22 H -0.211 1.211 23 C -0.065 4.065 24 C 0.023 3.977 25 N -0.319 5.319 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.045 0.955 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.133 0.867 37 H 0.223 0.777 38 H 0.427 0.573 39 H 0.126 0.874 40 H 0.405 0.595 41 H 0.193 0.807 42 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.643 0.225 -7.564 13.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.580 4.580 2 Si 1.283 2.717 3 C -0.563 4.563 4 C -0.565 4.565 5 C -0.353 4.353 6 N -0.122 5.122 7 C -0.114 4.114 8 C -0.127 4.127 9 N -0.264 5.264 10 C 0.357 3.643 11 O -0.424 6.424 12 C -0.178 4.178 13 C -0.280 4.280 14 Cl 0.035 6.965 15 S 0.493 5.507 16 C -0.305 4.305 17 C -0.142 4.142 18 O -0.366 6.366 19 Si 0.708 3.292 20 H -0.179 1.179 21 H -0.164 1.164 22 H -0.133 1.133 23 C -0.093 4.093 24 C -0.162 4.162 25 N -0.144 5.144 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.109 0.891 35 H 0.120 0.880 36 H 0.151 0.849 37 H 0.239 0.761 38 H 0.266 0.734 39 H 0.144 0.856 40 H 0.257 0.743 41 H 0.210 0.790 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 8.185 -0.585 -6.269 10.327 hybrid contribution 0.593 0.546 -0.104 0.813 sum 8.778 -0.039 -6.374 10.848 Atomic orbital electron populations 1.26523 1.24542 1.03001 1.03908 0.78267 0.63918 0.65869 0.63603 1.26141 1.07346 1.17879 1.04978 1.26201 1.07498 1.07668 1.15145 1.27404 1.06684 0.81759 1.19480 1.48284 1.14683 1.07684 1.41552 1.22540 1.00784 0.85047 1.03063 1.17747 0.98448 0.85689 1.10768 1.42357 1.24003 1.03626 1.56450 1.17597 0.83140 0.84190 0.79377 1.90757 1.26887 1.83436 1.41275 1.20190 0.97358 0.92959 1.07320 1.25561 0.95751 1.01199 1.05524 1.98425 1.25806 1.97982 1.74331 1.83441 1.12670 1.05079 1.49507 1.23872 1.00587 0.97379 1.08710 1.23860 0.84777 1.09254 0.96266 1.86469 1.19032 1.82760 1.48292 0.86349 0.84000 0.76648 0.82168 1.17926 1.16424 1.13306 1.21216 0.95398 0.96022 0.96645 1.24300 0.99755 0.92024 1.00112 1.77387 1.03330 1.12407 1.21235 0.91994 0.91274 0.93561 0.89565 0.90730 0.91018 0.92028 0.90987 0.89149 0.88019 0.84874 0.76082 0.73398 0.85619 0.74349 0.79045 0.80101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 -0.88 8.65 113.37 0.98 0.10 16 2 Si 1.09 -7.40 12.79 68.60 0.88 -6.52 16 3 C -0.45 3.32 8.65 113.37 0.98 4.30 16 4 C -0.46 2.97 8.65 113.37 0.98 3.95 16 5 C -0.19 0.91 5.59 127.77 0.71 1.63 16 6 N -0.34 -0.86 3.01 -182.91 -0.55 -1.41 16 7 C 0.03 -0.03 11.44 83.50 0.96 0.92 16 8 C -0.02 -0.11 6.90 37.62 0.26 0.15 16 9 N -0.62 -0.88 5.45 -307.27 -1.68 -2.56 16 10 C 0.57 4.34 7.76 86.56 0.67 5.01 16 11 O -0.55 -8.15 12.06 -4.28 -0.05 -8.20 16 12 C -0.16 -0.67 5.98 -19.84 -0.12 -0.78 16 13 C -0.13 -0.85 6.87 67.35 0.46 -0.39 16 14 Cl 0.01 0.06 27.20 -2.72 -0.07 -0.02 16 15 S 0.23 0.40 20.19 -56.49 -1.14 -0.74 16 16 C -0.19 0.43 5.69 24.51 0.14 0.57 16 17 C -0.03 0.21 2.93 71.24 0.21 0.42 16 18 O -0.56 4.00 12.86 -148.98 -1.92 2.09 16 19 Si 0.89 -4.62 26.20 68.60 1.80 -2.83 16 20 H -0.26 0.14 7.11 99.48 0.71 0.85 16 21 H -0.24 0.79 7.11 99.48 0.71 1.50 16 22 H -0.21 1.47 7.11 99.48 0.71 2.18 16 23 C -0.06 0.18 9.75 22.70 0.22 0.40 16 24 C 0.02 0.28 10.84 85.33 0.92 1.20 16 25 N -0.32 -3.61 12.56 -56.77 -0.71 -4.32 16 26 H 0.06 0.19 7.96 -2.39 -0.02 0.17 16 27 H 0.07 0.07 7.96 -2.39 -0.02 0.05 16 28 H 0.05 0.32 7.96 -2.39 -0.02 0.31 16 29 H 0.09 -0.82 7.96 -2.39 -0.02 -0.84 16 30 H 0.07 -0.47 7.96 -2.39 -0.02 -0.49 16 31 H 0.07 -0.46 7.96 -2.38 -0.02 -0.48 16 32 H 0.06 -0.24 7.96 -2.39 -0.02 -0.26 16 33 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 34 H 0.09 -0.91 7.96 -2.39 -0.02 -0.93 16 35 H 0.10 -0.36 7.96 -2.39 -0.02 -0.38 16 36 H 0.13 -1.53 7.96 -2.39 -0.02 -1.54 16 37 H 0.22 -2.50 8.06 -2.91 -0.02 -2.52 16 38 H 0.43 -3.05 7.37 -92.71 -0.68 -3.73 16 39 H 0.13 -1.74 7.96 -2.39 -0.02 -1.76 16 40 H 0.40 -6.53 8.74 -74.06 -0.65 -7.18 16 41 H 0.19 -1.98 7.10 -2.91 -0.02 -2.00 16 42 H 0.18 2.90 5.91 -2.91 -0.02 2.88 16 Total: 0.00 -26.07 386.08 4.44 -21.63 By element: Atomic # 1 Polarization: -15.11 SS G_CDS: 0.50 Total: -14.61 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: 7.38 Total: 17.48 kcal Atomic # 7 Polarization: -5.35 SS G_CDS: -2.94 Total: -8.29 kcal Atomic # 8 Polarization: -4.15 SS G_CDS: -1.97 Total: -6.11 kcal Atomic # 14 Polarization: -12.02 SS G_CDS: 2.67 Total: -9.35 kcal Atomic # 16 Polarization: 0.40 SS G_CDS: -1.14 Total: -0.74 kcal Atomic # 17 Polarization: 0.06 SS G_CDS: -0.07 Total: -0.02 kcal Total: -26.07 4.44 -21.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_13431040.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.628 kcal (2) G-P(sol) polarization free energy of solvation -26.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds